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1.
Proc Natl Acad Sci U S A ; 120(45): e2314781120, 2023 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-37903258

RESUMO

Recognition that common human amyloidoses are prion diseases makes the use of the Saccharomyces cerevisiae prion model systems to screen for possible anti-prion components of increasing importance. [PSI+] and [URE3] are amyloid-based prions of Sup35p and Ure2p, respectively. Yeast has at least six anti-prion systems that together cure nearly all [PSI+] and [URE3] prions arising in their absence. We made a GAL-promoted bank of 14,913 human open reading frames in a yeast shuttle plasmid and isolated 20 genes whose expression cures [PSI+] or [URE3]. PRPF19 is an E3 ubiquitin ligase that cures [URE3] if its U-box is intact. DNAJA1 is a J protein that cures [PSI+] unless its interaction with Hsp70s is defective. Human Bag5 efficiently cures [URE3] and [PSI+]. Bag family proteins share a 110 to 130 residue "BAG domain"; Bag 1, 2, 3, 4, and 6 each have one BAG domain while Bag5 has five BAG domains. Two BAG domains are necessary for curing [PSI+], but one can suffice to cure [URE3]. Although most Bag proteins affect autophagy in mammalian cells, mutations blocking autophagy in yeast do not affect Bag5 curing of [PSI+] or [URE3]. Curing by Bag proteins depends on their interaction with Hsp70s, impairing their role, with Hsp104 and Sis1, in the amyloid filament cleavage necessary for prion propagation. Since Bag5 curing is reduced by overproduction of Sis1, we propose that Bag5 cures prions by blocking Sis1 access to Hsp70s in its role with Hsp104 in filament cleavage.


Assuntos
Príons , Proteínas de Saccharomyces cerevisiae , Animais , Humanos , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Príons/genética , Príons/metabolismo , Proteínas de Choque Térmico HSP70/genética , Proteínas de Choque Térmico HSP70/metabolismo , Mutação , Amiloide/genética , Amiloide/metabolismo , Glutationa Peroxidase/genética , Glutationa Peroxidase/metabolismo , Proteínas Fúngicas/metabolismo , Mamíferos/metabolismo , Fatores de Processamento de RNA/genética , Proteínas Nucleares/metabolismo , Enzimas Reparadoras do DNA/genética
2.
Eur Biophys J ; 52(8): 673-704, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37670150

RESUMO

The single-celled baker's yeast, Saccharomyces cerevisiae, can sustain a number of amyloid-based prions, the three most prominent examples being [URE3], [PSI+], and [PIN+]. In the laboratory, haploid S. cerevisiae cells of a single mating type can acquire an amyloid prion in one of two ways (i) spontaneous nucleation of the prion within the yeast cell, and (ii) receipt via mother-to-daughter transmission during the cell division cycle. Similarly, prions can be lost due to (i) dissolution of the prion amyloid by its breakage into non-amyloid monomeric units, or (ii) preferential donation/retention of prions between the mother and daughter during cell division. Here we present a computational tool (Monitoring Induction and Loss of prions in Cells; MIL-CELL) for modelling these four general processes using a multiscale approach describing both spatial and kinetic aspects of the yeast life cycle and the amyloid-prion behavior. We describe the workings of the model, assumptions upon which it is based and some interesting simulation results pertaining to the wave-like spread of the epigenetic prion elements through the yeast population. MIL-CELL is provided as a stand-alone GUI executable program for free download with the paper. MIL-CELL is equipped with a relational database allowing all simulated properties to be searched, collated and graphed. Its ability to incorporate variation in heritable properties means MIL-CELL is also capable of simulating loss of the isogenic nature of a cell population over time. The capability to monitor both chronological and reproductive age also makes MIL-CELL potentially useful in studies of cell aging.


Assuntos
Príons , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Proteínas de Saccharomyces cerevisiae/metabolismo , Príons/metabolismo , Amiloide/metabolismo
3.
Int J Mol Sci ; 24(10)2023 May 12.
Artigo em Inglês | MEDLINE | ID: mdl-37240005

RESUMO

Prions are transmissible self-perpetuating protein isoforms associated with diseases and heritable traits. Yeast prions and non-transmissible protein aggregates (mnemons) are frequently based on cross-ß ordered fibrous aggregates (amyloids). The formation and propagation of yeast prions are controlled by chaperone machinery. Ribosome-associated chaperone Hsp70-Ssb is known (and confirmed here) to modulate formation and propagation of the prion form of the Sup35 protein [PSI+]. Our new data show that both formation and mitotic transmission of the stress-inducible prion form of the Lsb2 protein ([LSB+]) are also significantly increased in the absence of Ssb. Notably, heat stress leads to a massive accumulation of [LSB+] cells in the absence of Ssb, implicating Ssb as a major downregulator of the [LSB+]-dependent memory of stress. Moreover, the aggregated form of Gγ subunit Ste18, [STE+], behaving as a non-heritable mnemon in the wild-type strain, is generated more efficiently and becomes heritable in the absence of Ssb. Lack of Ssb also facilitates mitotic transmission, while lack of the Ssb cochaperone Hsp40-Zuo1 facilitates both spontaneous formation and mitotic transmission of the Ure2 prion, [URE3]. These results demonstrate that Ssb is a general modulator of cytosolic amyloid aggregation, whose effect is not restricted only to [PSI+].


Assuntos
Subunidades gama da Proteína de Ligação ao GTP , Príons , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Chaperonas Moleculares/metabolismo , Proteínas de Choque Térmico HSP70/genética , Proteínas de Choque Térmico HSP70/metabolismo , Príons/metabolismo , Glutationa Peroxidase/metabolismo , Subunidades gama da Proteína de Ligação ao GTP/metabolismo , Fatores de Terminação de Peptídeos/metabolismo
4.
Appl Microbiol Biotechnol ; 105(12): 5103-5112, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-34152451

RESUMO

Ure2 regulates nitrogen catabolite repression in Saccharomyces cerevisiae. Deletion of URE2 induces a physiological state mimicking the nitrogen starvation and autophagic responses. Previous work has shown that deletion of URE2 increases the fermentation rate of some wine-producing strains of S. cerevisiae. In this work, we investigated the effect of URE2 deletion (ΔURE2) on the metabolism of S. cerevisiae. During growth on glucose, the ΔURE2 mutant grew at a 40% slower rate than the wild type; however, it produced ethanol at a 31% higher rate. To better under the behavior of this mutant, we performed transcriptomics and metabolomics. Analysis of the RNA sequencing results and metabolite levels indicates that the mutant strain exhibited characteristics of both nitrogen starvation and autophagy, including the upregulation of allantoin, urea, and amino acid uptake and utilization pathways and selective autophagic machinery. In addition, pyruvate decarboxylase and alcohol dehydrogenase isoforms were expressed at higher rates than the wild type. The mutant also accumulated less trehalose and glycogen, and produced more lipids. The induction of a nitrogen starvation-like state and increase in lipid production in nitrogen-rich conditions suggest that URE2 may be a promising target for metabolic engineering in S. cerevisiae and other yeasts for the production of lipids and lipid-derived compounds. KEY POINTS: • Deletion of URE2 increases ethanol and lipid production in Saccharomyces cerevisiae. • Deletion of URE2 reduces glycogen and trehalose production. • Metabolic changes mimic nitrogen starvation and autophagic response.


Assuntos
Príons , Proteínas de Saccharomyces cerevisiae , Vinho , Fermentação , Glutationa Peroxidase , Piruvato Descarboxilase , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo
5.
J Biol Chem ; 294(5): 1729-1738, 2019 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-30710020

RESUMO

Yeast prions have become important models for the study of the basic mechanisms underlying human amyloid diseases. Yeast prions are pathogenic (unlike the [Het-s] prion of Podospora anserina), and most are amyloid-based with the same in-register parallel ß-sheet architecture as most of the disease-causing human amyloids studied. Normal yeast cells eliminate the large majority of prion variants arising, and several anti-prion/anti-amyloid systems that eliminate them have been identified. It is likely that mammalian cells also have anti-amyloid systems, which may be useful in the same way humoral, cellular, and innate immune systems are used to treat or prevent bacterial and viral infections.


Assuntos
Príons/antagonistas & inibidores , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Humanos
6.
Biotechnol Lett ; 42(4): 551-555, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31993847

RESUMO

OBJECTIVES: The metabolic pathway related to uridine production was modified in Bacillus subtilis in order to increase the production of uridine. RESULTS: Decreasing the relative transcriptional level of pur operon in Bacillus subtilis TD300 to 80%, and the production of the derived strain TD312 was increased to 11.81 g uridine/l and the yield was increased to 270 mg uridine/g glucose. The expression of pucR gene in situ by PccpA resulting in a 194.01-fold increase in the relative transcriptional level of pucR gene and 349.71-fold increase in the relative transcriptional level of ure operon, respectively. Furthermore, the production of TD314 reached 13.06 g uridine/l, while the yield reached 250 mg uridine/g glucose. CONCLUSION: This is the first report that more than 13 g uridine/l with a yield of 250 mg uridine/g glucose is produced in shake flask fermentation of genetically engineered Bacillus subtilis.


Assuntos
Bacillus subtilis/crescimento & desenvolvimento , Regulação para Baixo , Redes e Vias Metabólicas , Uridina/biossíntese , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Proteínas de Bactérias/genética , Técnicas de Cultura Celular por Lotes/instrumentação , Fermentação , Deleção de Genes , Regulação Bacteriana da Expressão Gênica , Glucose/metabolismo , Mutagênese Sítio-Dirigida , Óperon
7.
Sensors (Basel) ; 19(12)2019 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-31226761

RESUMO

The second-generation of the Beidou Navigation Satellite System (BDS-2) has been officially providing positioning, navigation, and timing (PNT) services within the Asia-Pacific region for six years, starting from 2013. A comprehensive analysis of BDS-2 satellite broadcast navigation message performance during the past six years is highly demanded, not only for the regional service but also for the global service announced in December 2018. Therefore, this study focuses on the performance assessment of six-year BDS-2 broadcast navigation messages from 2013 to 2018 in three aspects: Message availability, anomaly detection, and signal-in-space user range errors (SIS UREs). Firstly, our results, based on International GNSS service (IGS) Multi-GNSS Experiment (MGEX) navigation files, indicate that the BDS-2 Geosynchronous Earth Orbit (GEO) and Inclined Geosynchronous Satellite Orbit (IGSO) satellites have >98.51% broadcast navigation message availability, and the Medium Earth Orbit (MEO) satellites has a ~90.03% availability. Secondly, the comparison between broadcast navigation messages and IGS precise products reveals that the User Range Accuracy Index (URAI) contained in the broadcast message could not reflect satellite performance correctly. Another satellite status indicator, space vehicle (SV) health, can only partially detect a satellite anomaly. The anomaly detection result using IGS precise products for reference shows 20241 anomalies out of 651038 broadcast navigation messages within six years. Finally, compared with the IGSO and MEO satellites, the orbit qualities of GEO satellites are significantly worse due to their large along-track orbit error. The clock performance of all satellites are at the comparable level. The satellite orbit type (GEO/IGSO/MEO) does not impact the orbit-only URE, global-average URE, and worst-case URE.

8.
Sensors (Basel) ; 18(6)2018 Jun 04.
Artigo em Inglês | MEDLINE | ID: mdl-29867049

RESUMO

Signal-in-space (SIS) User Range Error (URE) is one of the major error sources for BeiDou Navigation Satellite System (BDS) applications and can reach tens of meters or even more. Therefore, real-time monitoring of SIS anomalies has a great realistic significance to guarantee the safety of users. According to an analysis of the BDS navigation messages, it showed that the User Range Accuracy (URA) index could not reflect the change of URE when it was abnormal. The conventional models using the relationship between URA and URE to monitor SIS anomalies are not suitable to the present BDS. Therefore, we use a prior information of SIS URE derived from ground observational data instead of URA to monitor BDS SIS anomalies. In order to realize the corresponding functions, we analysed the distribution of SIS UREs and obtained their prior models. Then, the monitoring threshold is determined using the prior models and a confidence interval instead of URA. The scheme was tested by applying to BDS SIS anomalies monitoring based on 13 ground tracking stations. The performance of this method was assessed by comparison with the satellite-health indicators from broadcast ephemeris. The results confirm that the method developed in this paper can rightly and timely detect abnormal SIS.

9.
Cell Mol Life Sci ; 73(6): 1131-44, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26713322

RESUMO

Prions, infectious proteins, can transmit diseases or be the basis of heritable traits (or both), mostly based on amyloid forms of the prion protein. A single protein sequence can be the basis for many prion strains/variants, with different biological properties based on different amyloid conformations, each rather stably propagating. Prions are unique in that evolution and selection work at both the level of the chromosomal gene encoding the protein, and on the prion itself selecting prion variants. Here, we summarize what is known about the evolution of prion proteins, both the genes and the prions themselves. We contrast the one known functional prion, [Het-s] of Podospora anserina, with the known disease prions, the yeast prions [PSI+] and [URE3] and the transmissible spongiform encephalopathies of mammals.


Assuntos
Amiloide/genética , Evolução Molecular , Príons/genética , Amiloide/análise , Amiloide/metabolismo , Animais , Proteínas Fúngicas/análise , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Glutationa Peroxidase/análise , Glutationa Peroxidase/genética , Glutationa Peroxidase/metabolismo , Humanos , Fatores de Terminação de Peptídeos/análise , Fatores de Terminação de Peptídeos/genética , Fatores de Terminação de Peptídeos/metabolismo , Podospora/química , Podospora/genética , Podospora/metabolismo , Doenças Priônicas/genética , Doenças Priônicas/metabolismo , Doenças Priônicas/patologia , Príons/análise , Príons/metabolismo , Conformação Proteica , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/análise , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo
10.
J Microbiol Immunol Infect ; 55(4): 620-633, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35367140

RESUMO

BACKGROUND/PURPOSE: Two urease operons were identified in Klebsiella pneumoniae CG43, ure-1 and ure-2. This study investigates whether a differential regulation of the expression of ure-1 and ure-2 exists and how urease activity influences the acid stress response and expression of type 1 and type 3 fimbriae. METHODS: The ureA1 and ureA2 gene specific deletion mutants were constructed. Promoter activity was assessed using a LacZ reporter system. The sensitivity to acid stress was determined by assessing the survival after pH 2.5 treatment. The influence on type 1 and type 3 fimbriae expression was assessed using western blotting and mannose-sensitive yeast agglutination and biofilm formation assay, respectively. RESULTS: Bacterial growth analysis in mM9-U or modified Stuart broth revealed that ure-1 was the principal urease system, and ure-2 had a negative effect on ure-1 activity. Deletion of the fur or nac gene had no apparent effect on the activity of Pure1, Pure2-1, and Pure2-2. The Pure2-2 activity was enhanced by deletion of the hns gene. ureA1 deletion increased acid stress sensitivity, whereas the deleting effect of ureA2 was notable without hns. Deletion of ureA1 or ureA2 significantly induced the expression of type 1 fimbriae but decreased MrkA production and biofilm formation. CONCLUSION: ure-1 is the primary expression system in K. pneumoniae CG43, while ure-2 is active in the absence of hns. Impairment of urease activity increases the sensitivity to acid stress, and the accumulation of urea induces the expression of type 1 fimbriae but represses type 3 fimbriae expression.


Assuntos
Klebsiella pneumoniae , Urease , Proteínas de Bactérias , Fímbrias Bacterianas , Regulação Bacteriana da Expressão Gênica
11.
J Med Biogr ; : 9677720221128012, 2022 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-36154741

RESUMO

Although many fields of endeavour emerge owing to the coalescence of the work and observations of numerous individuals, there is usually one seminal event that unites and acts as a catalyst to stimulate and advance the process. Such was the case with Alexander Ure. Up to this point it had been speculated that chemicals taken into the body may undergo bio-transformation, akin to the digestion of nutrients, but no unequivocal and quantitative experiments had been performed before those of Ure. Following his observations the subject began to flourish; to him may be attributed the beginnings of xenobiochemistry and the field now known as drug metabolism.

12.
Int J Public Health ; 67: 1604595, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35872704

RESUMO

Advocacy is instrumental to achieving significant policy change for vision. Global advocacy efforts over the past decades enabled recognition of vision as a major public health, human rights, and development issue. The United Nations General Assembly adopted its first-ever Resolution on vision: "Vision for Everyone-Accelerating Action to Achieve the Sustainable Development Goals (SDGs)" on 23 July 2021. The Resolution sets the target and commits the international community to improve vision for the 1.1 billion people living with preventable vision impairment by 2030. To fulfill their commitments, governments and international institutions must act now. Advocacy remains instrumental to mobilize funding and empower governments and stakeholders to include eye health in their implementation agenda. In this paper, we discuss the pivotal role advocacy plays in advancing vision for everyone now and in the post-COVID-19 era. We explore the link between improved eye health and the advancement of SDGs and define the framework and key pillars of advocacy to scaling-up success by 2030.


Assuntos
COVID-19 , Desenvolvimento Sustentável , COVID-19/prevenção & controle , Saúde Global , Direitos Humanos , Humanos , Saúde Pública , Nações Unidas
13.
Materials (Basel) ; 15(24)2022 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-36556627

RESUMO

Waterproof capacity, thermal isolation, and pushover strength are the main characteristics when an unstabilized rammed earth (URE) wall is constructed. In this paper, a comprehensive numerical simulation model is built to evaluate the effect of 15 different factors on those three aforementioned properties of URE walls. The simulation results show that the hydraulic, thermal, and mechanical properties of the wall are interconnected. It is found that the waterproof capacity of the wall can be mainly improved by increasing the dry density, decreasing the rising damp effect, and reducing the fine content value of the wall. The thermal insulation characteristic of the wall can be ameliorated by increasing the wall thickness and reducing the rising damp effect, fine content, and dry density. In addition, the pushover capacity of the wall can be strengthened by increasing the wall width, fine content, wall thickness, and vertical load and decreasing the rising dampness and wall height. In addition, time has a positive effect on the waterproof capacity, thermal insulation, and mechanical strength of URE walls. These properties change significantly in the first 100 days and then stabilize after 180 days for a typical URE wall. Eventually, a new theoretical approach is proposed to predict the long-term THM behavior of URE walls by considering the 15 factors in its framework.

14.
J Mol Biol ; 433(13): 166976, 2021 06 25.
Artigo em Inglês | MEDLINE | ID: mdl-33811921

RESUMO

The cellular chaperone machinery plays key role in the de novo formation and propagation of yeast prions (infectious protein). Though the role of Hsp70s in the prion maintenance is well studied, how Hsp90 chaperone machinery affects yeast prions remains unclear. In the current study, we examined the role of Hsp90 and its co-chaperones on yeast prions [PSI+] and [URE3]. We show that the overproduction of Hsp90 co-chaperone Tah1, cures [URE3] which is a prion form of native protein Ure2 in yeast. The Hsp90 co-chaperone Tah1 is involved in the assembly of small nucleolar ribonucleoproteins (snoRNP) and chromatin remodelling complexes. We found that Tah1 deletion improves the frequency of de novo appearance of [URE3]. The Tah1 was found to interact with Hsp70. The lack of Tah1 not only represses antagonizing effect of Ssa1 Hsp70 on [URE3] but also improves the prion strength suggesting role of Tah1 in both fibril growth and replication. We show that the N-terminal tetratricopeptide repeat domain of Tah1 is indispensable for [URE3] curing. Tah1 interacts with Ure2, improves its solubility in [URE3] strains, and affects the kinetics of Ure2 fibrillation in vitro. Its inhibitory role on Ure2 fibrillation is proposed to influence [URE3] propagation. The present study shows a novel role of Tah1 in yeast prion propagation, and that Hsp90 not only promotes its role in ribosomal RNA processing but also in the prion maintenance. SUMMARY: Prions are self-perpetuating infectious proteins. What initiates the misfolding of a protein into its prion form is still not clear. The understanding of cellular factors that facilitate or antagonize prions is crucial to gain insight into the mechanism of prion formation and propagation. In the current study, we reveal that Tah1 is a novel modulator of yeast prion [URE3]. The Hsp90 co-chaperone Tah1, is required for the formation of small nucleolar ribonucleoprotein complex. We show that the absence of Tah1 improves the induction of [URE3] prion. The overexpressed Tah1 cures [URE3], and this function is promoted by Hsp90 chaperones. The current study thus provides a novel cellular factor and the underlying mechanism, involved in the prion formation and propagation.


Assuntos
Glutationa Peroxidase/metabolismo , Chaperonas Moleculares/metabolismo , Complexos Multiproteicos/metabolismo , Príons/metabolismo , Ribonucleoproteínas Nucleolares Pequenas/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Deleção de Genes , Proteínas de Choque Térmico HSP90/metabolismo , Chaperonas Moleculares/química , Agregados Proteicos , Ligação Proteica , Domínios Proteicos , Estabilidade Proteica , Proteínas de Saccharomyces cerevisiae/química
15.
Genetics ; 218(1)2021 05 17.
Artigo em Inglês | MEDLINE | ID: mdl-33742650

RESUMO

[URE3] is a prion of the nitrogen catabolism controller, Ure2p, and [PSI+] is a prion of the translation termination factor Sup35p in S. cerevisiae. Btn2p cures [URE3] by sequestration of Ure2p amyloid filaments. Cur1p, paralogous to Btn2p, also cures [URE3], but by a different (unknown) mechanism. We find that an array of mutations impairing proteasome assembly or MG132 inhibition of proteasome activity result in loss of [URE3]. In proportion to their prion-curing effects, each mutation affecting proteasomes elevates the cellular concentration of the anti-prion proteins Btn2 and Cur1. Of >4,600 proteins detected by SILAC, Btn2p was easily the most overexpressed in a pre9Δ (α3 core subunit) strain. Indeed, deletion of BTN2 and CUR1 prevents the prion-curing effects of proteasome impairment. Surprisingly, the 15 most unstable yeast proteins are not increased in pre9Δ cells suggesting altered proteasome specificity rather than simple inactivation. Hsp42, a chaperone that cooperates with Btn2 and Cur1 in curing [URE3], is also necessary for the curing produced by proteasome defects, although Hsp42p levels are not substantially altered by a proteasome defect. We find that pre9Δ and proteasome chaperone mutants that most efficiently lose [URE3], do not destabilize [PSI+] or alter cellular levels of Sup35p. A tof2 mutation or deletion likewise destabilizes [URE3], and elevates Btn2p, suggesting that Tof2p deficiency inactivates proteasomes. We suggest that when proteasomes are saturated with denatured/misfolded proteins, their reduced degradation of Btn2p and Cur1p automatically upregulates these aggregate-handling systems to assist in the clean-up.


Assuntos
Sistemas de Transporte de Aminoácidos/metabolismo , Glutationa Peroxidase/metabolismo , Chaperonas Moleculares/metabolismo , Príons/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Sistemas de Transporte de Aminoácidos/genética , Amiloide/metabolismo , Citoplasma/metabolismo , Proteínas Fúngicas/metabolismo , Glutationa Peroxidase/genética , Proteínas de Choque Térmico/genética , Chaperonas Moleculares/genética , Fatores de Terminação de Peptídeos/genética , Fatores de Terminação de Peptídeos/metabolismo , Proteínas Priônicas/metabolismo , Príons/metabolismo , Complexo de Endopeptidases do Proteassoma/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
16.
Front Cell Infect Microbiol ; 10: 580980, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33194817

RESUMO

Background and Aims: Irritable bowel syndrome (IBS) and depression have high tendencies of comorbidity. In particular, diarrhea-predominant IBS (IBS-D) and depression exhibit similar fecal microbiota signatures, yet little is known about their pathogenic mechanism. Here, we propose that the differences in structure and composition of IBS-D and depression gut microbiota give rise to different downstream functions, which lead to distinct clinical phenotypes via host metabolism and further influence the interaction of brain-gut axis. Methods: We performed multiomics study, including fecal metagenome-wide sequencing and serum metabolomics profiling in 65 individuals with IBS-D (n=22), depression (n=15), comorbid patients (n=13), and healthy controls (n=15). We analyzed functional genes contributed by the primary genus and evaluated their correlations with clinical indices and host metabolites. Results: Metagenomic analysis revealed 26 clusters of orthologous groups of protein (COG) categories consisting of a total of 4,631 functional genes. Trehalose and maltose hydrolase (COG1554) and fucose permease (COG0738) were the most relevant and enriched functional genes in the IBS-D patients; urease accessory proteins UreE (COG2371) was that in the depression patients. Context based genome annotation suggest that an alteration of Escherichia coli and Enterobacter cloacae in IBS-D and depression respectively may be responsible for the enrichment described above. Correlation with host metabolites, such as maltotriose and isomaltose in carbohydrate metabolism and anandamide in neuroactive metabolism, drew further connections between these findings. Conclusions: These changes led us to propose a connection between genomic signatures and clinical differences observed in IBS-D and depression. Our findings provide further insights into the involvement of gut microbiota in diseases related to brain-gut disorder.


Assuntos
Microbioma Gastrointestinal , Síndrome do Intestino Irritável , Bactérias/genética , Depressão , Fezes , Humanos
17.
Future Med Chem ; 12(18): 1633-1645, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32892642

RESUMO

Background: Identification of novel Ure inhibitors with high potency has received considerable attention. Methodology & results: Ure inhibition was determined using the indophenol method, the affinities to Ure were estimated via surface plasmon resonance. Seventeen new plus ten known N-monosubstituted thiosemicarbazides were synthesized and identified as novel Ure inhibitors. Out of these compounds, compound b5 shows excellent activity against both crude Ure from Helicobacter pylori (IC50 = 0.04 µM) and Ure in living cell (IC50 = 0.27 µM), with the potency being over 600-fold higher than clinical used drug acetohyroxamic acid, respectively. Surface plasmon resonance demonstrated the high affinity (Kd.#x00A0;= 6.32 nM) of b5 to Ure. Conclusion: This work provides a class of novel and promising Ure inhibitors.


Assuntos
Antibacterianos/farmacologia , Helicobacter pylori/efeitos dos fármacos , Semicarbazidas/farmacologia , Fatores de Virulência/antagonistas & inibidores , Antibacterianos/síntese química , Antibacterianos/química , Linhagem Celular , Helicobacter pylori/citologia , Helicobacter pylori/metabolismo , Humanos , Testes de Sensibilidade Microbiana , Modelos Moleculares , Estrutura Molecular , Semicarbazidas/síntese química , Semicarbazidas/química , Fatores de Virulência/metabolismo
18.
Viruses ; 11(3)2019 03 09.
Artigo em Inglês | MEDLINE | ID: mdl-30857327

RESUMO

The known amyloid-based prions of Saccharomyces cerevisiae each have multiple heritable forms, called "prion variants" or "prion strains". These variants, all based on the same prion protein sequence, differ in their biological properties and their detailed amyloid structures, although each of the few examined to date have an in-register parallel folded ß sheet architecture. Here, we review the range of biological properties of yeast prion variants, factors affecting their generation and propagation, the interaction of prion variants with each other, the mutability of prions, and their segregation during mitotic growth. After early differentiation between strong and weak stable and unstable variants, the parameters distinguishing the variants has dramatically increased, only occasionally correlating with the strong/weak paradigm. A sensitivity to inter- and intraspecies barriers, anti-prion systems, and chaperone deficiencies or excesses and other factors all have dramatic selective effects on prion variants. Recent studies of anti-prion systems, which cure prions in wild strains, have revealed an enormous array of new variants, normally eliminated as they arise and so not previously studied. This work suggests that defects in the anti-prion systems, analogous to immune deficiencies, may be at the root of some human amyloidoses.


Assuntos
Variação Genética , Chaperonas Moleculares , Príons/genética , Príons/patogenicidade , Saccharomyces cerevisiae/genética , Amiloide/química , Amiloide/genética , Mutação , Conformação Proteica , Proteínas de Saccharomyces cerevisiae/genética
19.
Genetics ; 212(4): 1205-1225, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31213504

RESUMO

Saccharomyces cerevisiae lives in boom and bust nutritional environments. Sophisticated regulatory systems have evolved to rapidly cope with these changes while preserving intracellular homeostasis. Target of Rapamycin Complex 1 (TorC1), is a serine/threonine kinase complex and a principle nitrogen-responsive regulator. TorC1 is activated by excess nitrogen and downregulated by limiting nitrogen. Two of TorC1's many downstream targets are Gln3 and Gat1-GATA-family transcription activators-whose localization and function are Nitrogen Catabolite Repression- (NCR-) sensitive. In nitrogen replete environments, TorC1 is activated, thereby inhibiting the PTap42-Sit4 and PTap42-PP2A (Pph21/Pph22-Tpd3, Pph21,22-Rts1/Cdc55) phosphatase complexes. Gln3 is phosphorylated, sequestered in the cytoplasm and NCR-sensitive transcription repressed. In nitrogen-limiting conditions, TorC1 is downregulated and PTap42-Sit4 and PTap42-PP2A are active. They dephosphorylate Gln3, which dissociates from Ure2, relocates to the nucleus, and activates transcription. A paradoxical observation, however, led us to suspect that Gln3 control was more complex than appreciated, i.e., Sit4 dephosphorylates Gln3 more in excess than in limiting nitrogen conditions. This paradox motivated us to reinvestigate the roles of these phosphatases in Gln3 regulation. We discovered that: (i) Sit4 and PP2A actively function both in conditions where TorC1 is activated as well as down-regulated; (ii) nuclear Gln3 is more highly phosphorylated than when it is sequestered in the cytoplasm; (iii) in nitrogen-replete conditions, Gln3 relocates from the nucleus to the cytoplasm, where it is dephosphorylated by Sit4 and PP2A; and (iv) in nitrogen excess and limiting conditions, Sit4, PP2A, and Ure2 are all required to maintain cytoplasmic Gln3 in its dephosphorylated form.


Assuntos
Repressão Catabólica , Nitrogênio/metabolismo , Proteína Fosfatase 2/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Fatores de Transcrição/metabolismo , Transporte Ativo do Núcleo Celular , Núcleo Celular/metabolismo , Glutationa Peroxidase/metabolismo , Alvo Mecanístico do Complexo 1 de Rapamicina/genética , Alvo Mecanístico do Complexo 1 de Rapamicina/metabolismo , Fosforilação , Príons/metabolismo , Saccharomyces cerevisiae
20.
Prion ; 12(3-4): 234-244, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30165789

RESUMO

One of the major medical challenges of the twenty-first century is the treatment of incurable and fatal neurodegenerative disorders caused by misfolded prion proteins. Since the discovery of these diseases a number of studies have been conducted to identify small molecules for their treatment, however to date no curative treatment is available. These studies can be highly expensive and time consuming, but more recent experimental approaches indicate a significant application for yeast prions in these studies. We therefore used yeast prions to optimize previous high-throughput methods for the cheaper, easier and more rapid screening of natural extracts. Through this approach we aimed to identify natural yeast-prion inhibitors that could be useful in the development of novel treatment strategies for neurodegenerative disorders. We screened 500 marine invertebrate extracts from temperate waters in Australia allowing the identification of yeast-prion inhibiting extracts. Through the bioassay-driven chemical investigation of an active Suberites sponge extract, a group of bromotyrosine derivatives were identified as potent yeast-prion inhibitors. This study outlines the importance of natural products and yeast prions as a first-stage screen for the identification of new chemically diverse and bioactive compounds.


Assuntos
Produtos Biológicos/química , Produtos Biológicos/farmacologia , Poríferos/química , Príons/antagonistas & inibidores , Animais , Proteínas de Saccharomyces cerevisiae/metabolismo
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