Tree communities and functional traits determine herbivore compositional turnover.

There are many factors known to drive species turnover, although the mechanisms by which these operate are less clear. Based on comprehensive datasets from the largest tree diversity experiment worldwide (BEF-China), we used shared herbivore species (zeta diversity) and multi-site generalized dissimilarity modelling to investigate the patterns and determinants of species turnover of Lepidoptera herbivores among study plots across a gradient in tree species richness. We found that zeta diversity declined sharply with an increasing number of study plots, with complete changes in caterpillar species composition observed even at the fine spatial scale of our study. Plant community characteristics rather than abiotic factors were found to play key roles in driving caterpillar compositional turnover, although these effects varied with an increasing number of study plots considered, due to the varying contributions of rare and common species to compositional turnover. Our study reveals details of the impact of phylogeny- and trait-mediated processes of trees on herbivore compositional turnover, which has implications for forest management and conservation and shows potential avenues for maintenance of heterogeneity in herbivore communities.

Rare and common species contribute disproportionately to the functional variation within tropical forests.

Understanding how functional traits and functional entities (FEs, i.e., unique combinations of functional traits) are distributed within plant communities can contribute to the understanding of vegetation properties and changes in species composition. We utilized investigation data on woody plants (including trees, shrubs and lianas) from 17 1-ha plots across six old-growth tropical forest types on Hainan island, China. Plant species were categorized as common (>1 individuals/ha) and rare species (≤1 individuals/ha) according to their abundance to determine how they contributed to different ecosystem functions. First, we assessed the differences in traits between common and rare species, and second, we examined functional redundancy, functional over-redundancy, and functional vulnerability for common and rare species of the forests. We found that both common species and rare species in each of the forest types were placed into just a few FEs, leading to functional over-redundancy and resulting in functional vulnerability. Rare species tended to have different trait values than those of common species, and were differently distributed among FEs, indicating different contributions to ecosystem functioning. Our results highlighted the disproportionate contribution of rare species in all of the studied forests. Rare species are more likely than common species to possess unique FEs, and thus, they have a disproportionately large contribution to community trait space. The loss of such species may impact the functioning, redundancy, and resilience of tropical forests.

Comparison of Genetic Structure between Endangered and Common Butterflies, Ypthima multistriata and Y. argus (Lepidoptera; Nymphalidae), Inhabiting Japan.

Genetic structures of two closely related butterflies, Ypthima multistriata and Y. argus, inhabiting Japan were compared based on the mitochondrial cytochrome c oxidase subunit I (COI) sequences. The former species is classified as a vulnerable species and exhibits a characteristic pattern of voltinism: univoltine and bivoltine populations are distributed in a scattered manner. The latter species is common and has a normal geographical pattern of voltinism: the number of annual generations is correlated with latitude. Our genetic analyses of these two species yielded contrasting results: a spatial analysis of molecular variance (SAMOVA) and FST between each pair of populations revealed a locally fragmented genetic structure for Y. multistriata, compared to three distinct geographic groups of Y. argus within which range-wide gene flow occurs. Although Y. argus is a common species, only the southernmost populations in Japan had higher genetic diversity, while the other populations had the same or lower levels of genetic diversity, compared to Y. multistriata. These results indicate that: 1) the degree of fragmentation of Y. multistriata populations was higher; however, markedly lower genetic diversity was not found, and 2) although Y. argus is a common species, its populations may not be genetically robust. In addition, AMOVA revealed a relationship between voltinism and genetic variation in Y. multistriata. This result suggests a phylogenetic constraint of voltinism in this butterfly.

The inherent multidimensionality of temporal variability: how common and rare species shape stability patterns.

Empirical knowledge of diversity-stability relationships is mostly based on the analysis of temporal variability. Variability, however, often depends on external factors that act as disturbances, which makes comparisons across systems difficult to interpret. Here, we show how variability can reveal inherent stability properties of ecological communities. This requires that we abandon one-dimensional representations, in which a single variability measurement is taken as a proxy for how stable a system is, and instead consider the whole set of variability values generated by all possible stochastic perturbations. Despite this complexity, in species-rich systems, a generic pattern emerges from community assembly, relating variability to the abundance of perturbed species. Strikingly, the contrasting contributions of different species abundance classes to variability, driven by different types of perturbations, can lead to opposite diversity-stability patterns. We conclude that a multidimensional perspective on variability helps reveal the dynamical richness of ecological systems and the underlying meaning of their stability patterns.

Demystifying dominant species.

The pattern of a few abundant species and many rarer species is a defining characteristic of communities worldwide. These abundant species are often referred to as dominant species. Yet, despite their importance, the term dominant species is poorly defined and often used to convey different information by different authors. Based on a review of historical and contemporary definitions we develop a synthetic definition of dominant species. This definition incorporates the relative local abundance of a species, its ubiquity across the landscape, and its impact on community and ecosystem properties. A meta-analysis of removal studies shows that the loss of species identified as dominant by authors can significantly impact ecosystem functioning and community structure. We recommend two metrics that can be used jointly to identify dominant species in a given community and provide a roadmap for future avenues of research on dominant species. In our review, we make the case that the identity and effects of dominant species on their environments are key to linking patterns of diversity to ecosystem function, including predicting impacts of species loss and other aspects of global change on ecosystems.

Conserving the abundance of nonthreatened species.

Human modification of the environment is driving declines in population size and distributional extent of much of the world's biota. These declines extend to many of the most abundant and widespread species, for which proportionally small declines can result in the loss of vast numbers of individuals, biomass, and interactions. These losses could have major localized effects on ecological and cultural processes and services without elevating a species' global extinction risk. Although most conservation effort is directed at species threatened with extinction in the very near term, the value of retaining abundance regardless of global extinction risk is justifiable based on many biodiversity or ecosystem service metrics, including cultural services, at scales from local to global. The challenges of identifying conservation priorities for widespread and abundant species include quantifying the effects of species' abundance on services and understanding how these effects are realized as populations decline. Negative effects of population declines may be disconnected from the threat processes driving declines because of species movements and environment flows (e.g., hydrology). Conservation prioritization for these species shares greater similarity with invasive species risk assessments than extinction risk assessments because of the importance of local context and per capita effects of abundance on other species. Because conservation priorities usually focus on preventing the extinction of threatened species, the rationale and objectives for incorporating declines of nonthreatened species must be clearly articulated, going beyond extinction risk to encompass the range of likely harmful effects (e.g., secondary extinctions, loss of ecosystem services) if declines persist or are not reversed. Research should focus on characterizing the effects of local declines in species that are not threatened globally across a range of ecosystem services and quantifying the spatial distribution of these effects through the distribution of abundance. The case for conserving abundance in nonthreatened species can be made most powerfully when the costs of losing this abundance are better understood.

Conservación de la Abundancia de Especies No Amenazadas Resumen La modificación del ambiente causada por los humanos está resultando en la declinación del tamaño poblacional y de la extensión de la distribución de la mayor parte de la biota mundial. Estas declinaciones llegan hasta muchas de las especies más abundantes y con mayor distribución, para las cuales una declinación proporcionalmente pequeña puede resultar en la pérdida de un número extenso de individuos, biomasa e interacciones. Estas pérdidas podrían tener mayores efectos localizados sobre los procesos y servicios ecológicos y culturales sin elevar el riesgo de extinción mundial de la especie. Aunque casi todos los esfuerzos de conservación están dirigidos hacia especies bajo amenaza de extinción a corto plazo, el valor de mantener la abundancia sin importar el riesgo de extinción mundial es justificable con base en muchas medidas de biodiversidad o de servicios ambientales, incluyendo los servicios culturales, a escalas desde lo local hasta lo global. El reto de identificar prioridades de conservación para especies abundantes y de distribución extensa incluye la cuantificación de los efectos que la abundancia de la especie tiene sobre los servicios y el entendimiento de cómo estos efectos ocurren conforme las poblaciones declinan. Los efectos negativos de la declinación poblacional pueden estar desconectados del proceso que ocasiona la declinación por causa del movimiento de las especies y los flujos ambientales (p. ej.: la hidrología). La priorización de la conservación de estas especies comparte muchas más similitudes con la evaluación de riesgo de las especies invasoras que las evaluaciones de extinción de riesgo debido a la importancia del contexto local y los efectos per cápita de la abundancia sobre otras especies. Ya que los esfuerzos de conservación generalmente se enfocan en la prevención de la extinción de las especies amenazadas, la lógica y los objetivos detrás de la incorporación de las declinaciones de las especies no amenazadas deben estar articulados claramente, llegando más allá del riesgo de extinción para englobar la gama de efectos dañinos probables (p. ej.: extinciones secundarias, pérdida de servicios ambientales) en el caso de que las declinaciones persistan o no sean revertidas. La investigación debería enfocarse en la caracterización de los efectos de las declinaciones locales de especies que no estén amenazadas mundialmente a lo largo de una gama de servicios ambientales y en la cuantificación de la distribución espacial de estos efectos por medio de la distribución de la abundancia. Se puede argumentar de manera más poderosa el caso para la conservación de la abundancia de especies no amenazadas cuando se entienden mejor los costos de la pérdida de esta abundancia.

A composite measure of habitat loss for entire assemblages of species.

Habitat destruction is among the greatest threats facing biodiversity, and it affects common and threatened species alike. However, metrics for communicating its impacts typically overlook the nonthreatened component of assemblages. This risks the loss of habitat going unreported for species that comprise the majority of assemblages. We adapted a widely used measure for summarizing researcher output (the h index) to provide a metric that describes natural habitat loss for entire assemblages, inclusive of threatened and nonthreatened species. For each of 447 Australian native terrestrial bird species, we combined information on their association with broad vegetation groups with distributional range maps to identify the difference between the estimated pre-European and current extents of potential habitat, defined as vegetation groups most closely associated with each species. From this, we calculated the loss index (LI), which revealed that 30% of native birds have each lost at least 30% of their potential natural habitat (LI = 30). At the subcontinental scale, LIs ranged from 15 in arid Australia to 61 in the highly transformed southeastern part of the country. Different subcomponents of the assemblage had different LI values. For example, Australia's parrots (n = 52 species) had an LI of 38, whereas raptors (n = 32 species) had an LI of 25. The LI is simple to calculate and can be determined using readily available spatial information on species distributions, native vegetation associations, and human impacts on natural land cover. This metric, including the curves used to deduce it, could complement other biodiversity indices if it is used for regional and global biodiversity assessments that compare the status of natural habitat extent for assemblages within and among nations, monitor changes through time, and forecast future changes to guide strategic land-use planning. The LI is an intuitive tool that can be used to summarize and communicate how human actions affect whole assemblages, not just threatened species.

Una Medida Compuesta de la Pérdida del Hábitat para Ensamblajes Enteros de Especies Resumen La destrucción del hábitat está entre las principales amenazas para la biodiversidad, además de que afecta tanto a especies comunes como a las especies amenazadas. Sin embargo, las medidas para comunicar los impactos de esta destrucción generalmente ignoran al componente no amenazado de los ensamblajes de especies. Esto genera el riesgo de que la pérdida del hábitat pase desapercibida en el caso de las especies que conforman a la mayoría de los ensamblajes. Adaptamos una medida de uso amplio para resumir las contribuciones de los investigadores (el índice h) y así proporcionar una medida que describa la pérdida del hábitat para ensamblajes enteros, incluyendo a las especies amenazadas y a las no amenazadas. Para cada una de las 447 especies de aves terrestres nativas a Australia, combinamos la información sobre su asociación con grupos generales de vegetación con mapas de extensión de su distribución para identificar la diferencia entre la extensión estimada previa a la llegada de los europeos y la extensión actual de los hábitats potenciales, definidos como los grupos de vegetación asociados más cercanamente con cada especie. A partir de esto, calculamos el índice de pérdida (LI, en inglés), el cual reveló que el 30% de cada una de las aves nativas ha perdido al menos el 30% de su hábitat natural potencial (LI = 30). A escala subcontinental, los LI variaron desde 15 para las partes áridas de Australia, hasta 61 en la altamente transformada parte sureste del país. Los diferentes subcomponentes del ensamblaje tuvieron diferentes valores de LI. Por ejemplo, los loros australianos (n = 52 especies) tuvieron un LI de 38, mientras que las aves rapaces (n = 32 especies) tuvieron un LI de 25. El LI es fácil de calcular y puede determinarse usando información espacial que ya se encuentra disponible, las asociaciones con la vegetación nativa y los impactos humanos sobre la cobertura natural del suelo. Esta medida, incluyendo las curvas que se usan para deducirla, podrían complementar otros índices de biodiversidad si se usa para evaluaciones de la biodiversidad regional y global, las cuales comparan el estado de la extensión del hábitat natural para ensamblajes dentro y entre las naciones, monitorean cambios a través del tiempo y pronostican cambios futuros que guíen la planeación del uso de suelo estratégico. El LI es una herramienta intuitiva que puede usarse para resumir y comunicar cómo las acciones humanas afectan a ensamblajes enteros, no sólo a las especies amenazadas.

Assessing the clinical relevance of Fenollaria massiliensis in human infections, using MALDI-TOF MS.

Within the European Network for the Rapid Identification of Anaerobes (ENRIA) project eight clinical isolates of Fenollaria massiliensis were encountered. In this study a more extensive description of this species is given and the MALDI-TOF MS database is optimized for its identification. F. massiliensis is an anaerobic Gram positive rod with the tendency to decolorize quickly. It is mostly encountered in clinical samples from the groin region. Less common and non-valid species are not represented in the MALDI-TOF MS database. Therefore, F. massiliensis can only be identified by laboratories performing 16S rDNA gene sequencing. The addition of less common and non-valid species to the database will give insight in their clinical relevance.

Trait-based analysis of decline in plant species ranges during the 20th century: a regional comparison between the UK and Estonia.

Although the distribution ranges and abundance of many plant species have declined dramatically in recent decades, detailed analysis of these changes and their cause have only become possible following the publication of second- and third-generation national distribution atlases. Decline can now be compared both between species and in different parts of species' ranges. We extracted data from distribution atlases to compare range persistence of 736 plant species common to both the UK and Estonia between survey periods encompassing almost the same years (1969 and 1999 in the UK and 1970 and 2004 in Estonia). We determined which traits were most closely associated with variation in species persistence, whether these were the same in each country, and the extent to which they explained differences in persistence between the countries. Mean range size declined less in Estonia than in the UK (24.3% vs. 30.3%). One-third of species in Estonia (239) maintained >90% of their distribution range compared with one-fifth (141) in the UK. In Estonia, 99 species lost >50% of their range compared with 127 species in the UK. Persistence was very positively related to original range in both countries. Major differences in species persistence between the studied countries were primarily determined by biogeographic (affiliation to floristic element) and ecoevolutionary (plant strategy) factors. In contrast, within-country persistence was most strongly determined by tolerance of anthropogenic activities. Decline of species in the families Orchidaceae and Potamogetonaceae was significantly greater in the UK than in Estonia. Almost all of the 736 common and native European plant species in our study are currently declining in their range due to pressure from anthropogenic activities. Those species with low tolerance of human activity, with biotic pollination vectors and in the families referred to above are the most vulnerable, especially where human population density is high.

Different facets of alpha and beta diversity of benthic diatoms along stream watercourse in a large near-natural catchment.

Understanding the processes and mechanisms that shape the distribution patterns and variations of biodiversity along spatial gradients continues to be a priority for ecological research. We focused on the biodiversity of benthic diatom communities within a large near-natural watershed. The objectives are: (1) to explore the overall spatial patterns of benthic diatom biodiversity; (2) to investigate the effects associated with watercourse position and environmental variables, as well as both common and rare species on two facets (i.e., taxonomic and functional) of alpha and beta diversity; and (3) to unveil the mechanisms underlying their spatial variations. Alpha diversity indices along the stream watercourse showed a clear increasing trend from upstream to downstream sites. Results of random forest regression identified conductivity as the primary factor influencing functional alpha diversity, while elevation emerged as the predominant factor for taxonomic alpha diversity. Beta diversity partitioning revealed that taxonomic beta diversity generally exceeded functional beta diversity. These diversity measures exhibited different patterns along the watercourse position: taxonomic beta diversity remained relatively consistent along the watercourse, whereas functional total beta diversity and its two components of middle stream sites were lower than those of upstream and downstream sites. Functional beta diversity was sustained by dominant and common species, while rare species made significant contributions to taxonomic beta diversity. Both taxonomic and functional beta diversity and its components displayed a stronger influence from spatial factors than from local environmental, geo-climatic, and nutrient variables. Collectively, taxonomic and functional alpha and beta diversity demonstrated distinct responses to the main environmental gradients and spatial factors within our catchment, highlighting their different insights into diatom diversity. Furthermore, research is required to assess the generalizability of our findings to similar ecosystems. In addition, this study presents opportunities for expansion to include other taxa (e.g., macroinvertebrates and fish) to gain a comprehensive understanding of the driving mechanisms behind stream biodiversity.

Exotic Animal Practice in Africa.

This article explores the evolution, unique aspects, and challenges facing exotic animal practice in South Africa. This article delves into the slow emergence of dedicated exotic practices and the challenges faced by veterinarians in a vast and diverse landscape. The unique nature of the veterinary landscape is highlighted, emphasizing the impact of varied climates on species inhabiting different regions. The challenges are multifaceted, ranging from limited education infrastructure to dietary issues, unregulated feeds, and the complexities of herbal medicine use. The narrative explores client education challenges due to the scarcity of dedicated practices, underlining the importance of communication channels.

Helminths found in common species of the herpetofauna in Ukraine.

Background: Only a few comprehensive studies have been carried out on parasites in amphibians and reptiles in Ukraine. This has resulted in identifying over 100 helminth species across these vertebrate groups. However, most of the studies were performed in the 20th century and the taxonomy of many parasites and their hosts has changed ever since, in addition to the discovery of new species and registrations of species that had not been previously known for Ukraine. In recent decades, there have been very few publications on helminths from amphibian or reptile hosts in this region. Notably, just one of these recent studies is a faunistic study, providing a list of helminths found in two species of green frogs - Pelophylaxridibundus (Pallas, 1771) and Pelophylaxesculentus (Linnaeus, 1758). Therefore, it is clear that publishing datasets of modern records of helminths in these vertebrate groups, based on modern taxonomy, is an essential step in further studies of their parasitic diversity. Additionally, such study is important in terms of global climate change, the growing number of possibilities of invasion of alien species (both hosts and parasites) that might potentially become a threat to native biota and growing anthropogenic pressure on local populations of hosts that affect the parasites as well. In future, this study is planned to be used for the creation of a checklist of helminths of the herpetofauna of Ukraine. The present dataset is an inventory of various species of helminths parasitising common species of the herpetofauna in central, northern, western and southern Ukraine recorded during field studies in the 2021-2023 period. New information: The dataset is the first one to represent the up-to-date and unified data on helminths of reptiles and amphibians of Ukraine. Previously, records of this group of organisms with reference to their hosts were presented as several separate records within the country. Currently, this is the largest dataset presenting geocoded records of non-human-related helminths in the fauna of Ukraine. It reports helminth species from 15 hosts (205 individuals), including eight amphibians and seven reptilian species found in various Ukrainian regions. A total of 47 helminth species have been documented in the research and during 2021-2023 period on the territory of northern (Kyiv and Zhytomyr), western (Lviv, Zakarpattia Ivano-Frankivsk), central (Vinnytsia, Dnipropetrovsk, Cherkasy, Zaporizhzhia and Poltava) and southern (Odesa) regions of Ukraine. The identified helminth species belong to the following phyla: Acanthocephala (Centrorhynchidae (2), Echinorhynchidae (2)); Nematoda (Acuariidae, Anisakidae, Cosmocercidae (3), Dioctophymatidae, Gnathostomatidae (1), Kathlanidae (1), Molineidae (7), Onchocercidae (1), Pharyngodonidae (1), Rhabdiasidae (6), Strongyloididae); Platyhelminthes (Diplodiscidae (1), Diplostomidae (2), Encyclometridae (1), Haematoloechidae (1), Leptophallidae (2), Macroderidae (1), Mesocestoididae, Opisthorchiidae (2), Plagiorchiidae (3), Pleurogenidae (2), Polystomatidae (3), Proteocephalidae (1), Strigeidae (1) and Telorchiidae (3)). Only some helminths in the dataset were not identified to species level. Material is stored in the collection of the department of Parasitology of the I. I. Schmalhausen Institute of Zoology NAS of Ukraine.

Rare and common species contribute disproportionately to alpine meadow community construction and functional variation.

It is widely accepted that rare species are the first species to become extinct after human-induced disturbances. However, the functional importance of rare species still needs to be better understood, especially in alpine meadow communities with harsher habitats, where the extinction rate of rare species may be higher. This study established a 1.85 × 105 m2 permanent research sample plot on the eastern Tibetan Plateau. We investigated data from 162 plots at 6 different sampling scales in alpine meadows to determine the contribution of rare and common species to alpine meadow communities' structural and functional variability. The results showed that (1) Asteraceae (Compositae) was the dominant family in the surveyed localities. The trends of species diversity indices were the same, and all of them increased with the increase of sampling scale, and the plant community showed apparent scale effects. (2) The community construction of rare species at small scales with high occupancy transitioned from neutral processes to ecological niche processes, while the community construction of common species at different sampling scales was all dominated by ecological niche processes. (3) The trait values of rare species at different sampling scales were different from those of common species, and their distribution in FEs (functional entities) was also different, indicating that they contributed differently to the ecological functions of the communities. Rare species with lower abundance in the surveyed communities had a higher proportion of FEs, indicating that rare species had a more significant proportion of contribution to FEs. The functional redundancy (FR) of rare species was lower than that of common species, and the functional vulnerability (FV) was higher than that of common species. Therefore, the loss of rare species is more likely to cause the loss of community ecological functions, affecting the function and resilience of alpine meadow ecosystems.

Records of common species of amphibians and reptiles widespread in northern, central, western and southern Ukraine.

Background: The dataset includes records of amphibian and reptile species from northern, central, western and southern Ukraine made by Ukrainian herpetologist O. D. Nekrasova during her field trips in the period from 1996 to 2022. Chosen species were not included in the latest published edition of the Red Data Book of Ukraine (2009) and in the latest lists of such species prepared in 2019. The species mentioned in this dataset are characterised by wide range within the country, covering more than 70% of its territory according to spatial distribution modelling (GIS-modelling) made with the help of Maxent software. New information: The dataset highlights records of eight common species of herpetofauna of Ukraine collected by the first author for the last 26 years. Within the period from 1996 to 2022, O. D. Nekrasova collected and studied information and material on the herpetofauna of the northern, central, western and southern parts of Ukraine from a total of 3960 cadastral points (1707 - for three species of reptiles and 2253 - for five species of amphibians). These records, being now available for the international scientific community, will fill the gap in updated records of the mentioned species, being potentially useful for GIS-modelling, distribution modelling, clarification of conservation lists of national and local importance, further assessment of impact of the war on native biota etc.

Molecular and quantitative genetic variation within and between populations of the declining grassland species Saxifraga granulata.

Formerly common plant species are expected to be particularly susceptible to recent habitat fragmentation. We studied the population genetics of 19 recently fragmented Saxifraga granulata populations (max. distance 61 km) in Luxembourg and neighboring Germany using RAPD markers and a common garden experiment. We assessed (1) the relationships between plant fitness, quantitative genetic variation, molecular genetic variation, and population size; and (2) the relative importance of genetic drift and selection in shaping genetic variation. Molecular genetic diversity was high but did not correlate with population size, habitat conditions, or plant performance. Genetic differentiation was low (F ST = 0.079 ± 0.135), and there was no isolation by distance. Longevity, clonality, and the long-lived seed bank of S. granulata may have prevented strong genetic erosion and genetic differentiation among populations. However, genetic distinctness increased with decreasing genetic diversity indicating that random genetic drift occurred in the studied populations. Quantitative and molecular genetic variations were correlated, and their differentiation (Q ST vs. F ST) among S. granulata populations was similar, suggesting that mainly random processes have shaped the quantitative genetic differentiation among populations. However, pairwise quantitative genetic distances increased with geographic and climatic distances, even when adjusted for molecular genetic distances, indicating diversifying selection. Our results indicate that long-lived clonal species may be buffered at least temporarily against the negative effects of fragmentation. The relationship between quantitative genetic and geographic distance may be a more sensitive indicator of selection than Q ST-F ST differences.

Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats.

Due to the massive quantity and broad phylogeny, an accurate measurement of microbial diversity is highly challenging in soil ecosystems. Initially, the deviation caused by sampling should be adequately considered. Here, we attempted to uncover the effect of different sampling strategies on α diversity measurement of soil prokaryotes. Four 1 m2 sampling quadrats in a typical grassland were thoroughly surveyed through deep 16S rRNA gene sequencing (over 11 million reads per quadrat) with numerous replicates (33 soil sampling cores with total 141 replicates per quadrat). We found the difference in diversity was relatively small when pooling soil cores before and after DNA extraction and sequencing, but they were both superior to a non-pooling strategy. Pooling a small number of soil cores (i.e., 5 or 9) combined with several technical replicates is sufficient to estimate diversities for soil prokaryotes, and there is great flexibility in pooling original samples or data at different experimental steps. Additionally, the distribution of local α diversity varies with sampling core number, sequencing depth, and abundance distribution of the community, especially for high orders of Hill diversity index (i.e., Shannon entropy and inverse Simpson index). For each grassland soil quadrat (1 m2), retaining 100,000 reads after taxonomic clustering might be a realistic option, as these number of reads can efficiently cover the majority of common species in this area. Our findings provide important guidance for soil sampling strategy, and the general results can serve as a basis for further studies.

Lake-stream transition zones support hotspots of freshwater ecosystem services: Evidence from a 35-year study on unionid mussels.

Securing adequate supply of high-quality water is of increasing global importance and relies in large part on ecosystem services provided by freshwater biota. Unionid mussels are important keystone species and habitat engineers that shape freshwater ecosystems through water filtration, nutrient cycling and provision of habitats; their rapid global declines result in dramatic losses of ecosystem functions. Maintenance and enhancement of the services they provide depend on the identification of their crucial habitats. Following theoretical assumptions, this study analyses the importance of lake-stream transition zones for unionid mussels, based on data collected in 1984 and 2019 from an undisturbed stream flowing through five consecutive lakes. Mussel distribution matched the distribution of host fish and was strongly influenced by lakes: densities were highest near lake outlets, reaching 290 ind. m-2 (14.7 kg m-2) in 2019, and declined with downstream distance following a negative power function. This pattern was spatially consistent and sustained over time. All six unionid species native to north-central Europe were present, but common species (Anodonta anatina, Unio pictorum, U. tumidus) contributed about 80% of individuals and were responsible for most of the ecosystem services provided by unionid mussels. Estimated 1.9 × 106 mussel individuals inhabiting 3.2 km of stream length filtered a water volume equivalent to the total stream discharge approximately 2.5 times daily. Aggregations of spent shells, up to 17 kg m-2, accumulated downstream of lakes, forming extensive shell and mussel beds, providing habitats and contributing shell hash that improved stream-bed conditions. Globally invasive Dreissena polymorpha was present at low densities and did not spread or increase in abundance, indicating a long-term biotic resistance of the natural native community. Our study underscores the importance of undisturbed lake outlets, longitudinal connectivity of riverine ecosystems, and of common mussel species in maintaining freshwater ecosystem functionality and provision of vital services.

Direct and indirect effect of cannibalism and intraguild predation in the two sibling Harmonia ladybird beetles.

In this study, we focused on the direct (i.e., predation) and indirect (i.e., potential threat from coexisting with a larger individual) effects of cannibalism and intraguild predation (IGP) during larval stages of two sibling ladybird beetles. These effects play an important role in the coexistence of the generalist-common Harmonia axyridis and specialist-rare H. yedoensis (Coleoptera: Coccinellidae). Direct predation effect of cannibalism and IGP was asymmetric in the two sibling ladybird beetles; the fourth instar larvae of H. axyridis were better intraguild predators than cannibals, while the reverse was true in the larvae of H. yedoensis. Neither cannibalism nor IGP significantly affected female body weight in either species. Larval H. axyridis surviving exposure to cannibalism or IGP had a reduced number of ovarioles as adults, whereas adult H. yedoensis ovarioles were not affected. For the indirect effects, longer developmental times in males and females and a lower total number of ovarioles in females were detected in H. axyridis. In H. yedoensis, shorter developmental time of males, lighter adult weight and fewer total ovarioles in females were observed. Olfactometer choice experiments clarified that the fourth instar larvae of H. axyridis avoided the first instar conspecific larvae, while those of H. yedoensis were attracted to the odors from H. axyridis and conspecifics. Thus, H. axyridis has an avoidance mechanism only for cannibalism but not for IGP, whereas H. yedoensis does not have any avoidance mechanism. These different behaviors in the direct and indirect effects of cannibalism and IGP observed in the laboratory may play important roles in the coexistence of generalist-common H. axyridis and specialist-rare H. yedoensis in natural conditions, compensating for the large handicap of H. yedoensis at reproductive interference from H. axyridis.

Common Species Maintain a Large Root Radial Extent and a Stable Resource Use Status in Soil-Limited Environments: A Case Study in Subtropical China.

Coarse root systems provide a framework for water and nutrient absorption from the soil and play an important role in plant survival in harsh environments. However, the adaptions of plant roots in soil-limited environments with low water storage capacity and nutrient content needs to be better understood. The adaptation strategies of two common plant species (a deciduous tree Platycarya longipes and an evergreen shrub Tirpitzia ovoidea) from two contrasting habitats (a shallow rocky soil and a nearby deep soil) in a karst region of subtropical China were compared and analyzed. Foliar nutrient concentrations, stoichiometry, stable carbon, and oxygen isotopes were used to determine plant nutrient and water use status across these two habitats. Six indexes, including maximum root depth, maximum root radial extent, number of major roots and secondary roots, and tapering rate and curvature, were all investigated to characterize coarse root systems. Results show that both species exhibited similar nutrient and water use status in the two habitats that had contrasting water holding capacity and available nutrient content. On the other hand, although maximum root depths of the individual plants were not deeper than 33 cm, maximum radial extents were much larger when compared to rooting depths. Specifically, the ratio of radial extent to depth in the soil-limited habitat was approximately 6 and 1.5 times higher than that in the deep-soil habitat for the tree and shrub, respectively. Additionally, especially for the tree, a larger root radial extent was further accompanied by lower root tapering rate and bending levels. Our results provided evidence that plants growing in soil-limited environments maintain a stable resource use status along with large radially extended coarse root systems in humid karst regions like southwest China.

Dominant tree species drive beta diversity patterns in western Amazonia.

The forests of western Amazonia are among the most diverse tree communities on Earth, yet this exceptional diversity is distributed highly unevenly within and among communities. In particular, a small number of dominant species account for the majority of individuals, whereas the large majority of species are locally and regionally extremely scarce. By definition, dominant species contribute little to local species richness (alpha diversity), yet the importance of dominant species in structuring patterns of spatial floristic turnover (beta diversity) has not been investigated. Here, using a network of 207 forest inventory plots, we explore the role of dominant species in determining regional patterns of beta diversity (community-level floristic turnover and distance-decay relationships) across a range of habitat types in northern lowland Peru. Of the 2,031 recorded species in our data set, only 99 of them accounted for 50% of individuals. Using these 99 species, it was possible to reconstruct the overall features of regional beta diversity patterns, including the location and dispersion of habitat types in multivariate space, and distance-decay relationships. In fact, our analysis demonstrated that regional patterns of beta diversity were better maintained by the 99 dominant species than by the 1,932 others, whether quantified using species-abundance data or species presence-absence data. Our results reveal that dominant species are normally common only in a single forest type. Therefore, dominant species play a key role in structuring western Amazonian tree communities, which in turn has important implications, both practically for designing effective protected areas, and more generally for understanding the determinants of beta diversity patterns.