Assessing the ecological effects of low-intensity marine aggregate extraction in a strong-hydrodynamic, coarse environment context: A case study of the GIE GMO site (English channel).

Marine aggregate extraction represents an opportunity to face the depletion of terrestrial aggregate resources. The environmental effects of this activity have been assessed in several studies, leading to the formulation of recommendations to mitigate its effects. This study investigates its environmental impacts in a coarse, high-current environment with low-intensity extraction, a unique scenario not extensively studied before. Employing multivariate analyses and a trophic group approach, it examines complex responses at both species and community levels. Results indicate a decline in biodiversity, promoting the establishment of r-selected species, particularly filter feeders. Although site restoration timelines remain uncertain, initial indications suggest rapid recovery (2-3 years) for this site. The study also discusses methodological challenges in sampling these low-intensity dredged sites and emphasizes the need for new indices tailored to this pressure and coarse sediments under strong hydrodynamics. These insights offer valuable directions for future research.

Sediment grain size and benthic community structure in the eastern English Channel: Species-dependent responses and environmental influence.

This study addresses the scarcity of evidence on the relationship between benthic communities and coarse-grained sediments in the eastern English Channel. The region's geological history contributes to its predominantly coarse sediment composition. The study employs ternary plots to visualize benthic species' preferences and tolerance for sediment types, revealing their effectiveness. Redundancy Analyses (RDA) and species-level quantile regressions explore the influence of grain size on benthic species distribution. The results indicate a moderate impact of grain size, influenced by hydrodynamics. Estuaries, particularly the Seine Estuary, significantly shape benthic species distribution. Quantile regressions underscore the varied responses of benthic communities along the grain size gradient. The study underscores the importance of considering coarse sediments, offering insights into the complex relationship between benthic communities and sediment characteristics.

Prevalence of small high-density microplastics in the continental shelf and deep sea waters of East Asia.

Microplastics are widely distributed throughout aquatic environments. Information about the vertical distribution and fate of microplastics in seawater remains limited. To elucidate the vertical distribution of microplastics, three to six vertical water column layers were sampled based on the thermocline depth, from which the vertical distribution and characteristics of microplastics larger than 20 µm were investigated in continental shelf and deep-sea waters around South Korea. In addition, microplastics incorporated into marine aggregates (aggregated fraction) were investigated to determine the contribution of aggregates to vertical transport of microplastics. The abundance of microplastics was in the range of 15-9,400 particles/m3. No consistent trend was observed in the overall vertical profiles. The size, shape and polymer compositions of microplastics at each station were generally comparable throughout the water column. Unexpectedly, high-density (HD; > 1.02 g/cm3) polymers accounted for an average of 73% of total microplastics. As polymer density increased, the proportion of microplastics less than 100 µm in size increased. HD polymers also accounted for 68% of the aerosol samples collected together with water samples. Due to the relatively high proportion of HD polymers in far-offshore waters, high-density solution should be used to extract microplastics, even from surface seawaters. The aggregated fraction accounted for 0-28.6% (average, 3.4%) of total microplastics. Marine aggregates are considered an important mechanism of transport for microplastics less dense than seawater to the deep-water column, but they showed lower proportions than expected in continental shelf and deep-sea waters around South Korea.

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.

Microbial interactions driving key biogeochemical fluxes often occur within multispecies consortia that form spatially heterogeneous microenvironments. Here, we describe the "green berry" consortia of the Sippewissett salt marsh (Falmouth, MA, United States): millimeter-sized aggregates dominated by an uncultured, diazotrophic unicellular cyanobacterium of the order Chroococcales (termed GB-CYN1). We show that GB-CYN1 is closely related to Crocosphaera watsonii (UCYN-B) and "Candidatus Atelocyanobacterium thalassa" (UCYN-A), two groups of unicellular diazotrophic cyanobacteria that play an important role in marine primary production. Other green berry consortium members include pennate diatoms and putative heterotrophic bacteria from the Alphaproteobacteria and Bacteroidetes. Tight coupling was observed between photosynthetic oxygen production and heterotrophic respiration. When illuminated, the green berries became supersaturated with oxygen. From the metagenome, we observed that GB-CYN1 encodes photosystem II genes and thus has the metabolic potential for oxygen production unlike UCYN-A. In darkness, respiratory activity rapidly depleted oxygen creating anoxia within the aggregates. Metagenomic data revealed a suite of nitrogen fixation genes encoded by GB-CYN1, and nitrogenase activity was confirmed at the whole-aggregate level by acetylene reduction assays. Metagenome reads homologous to marker genes for denitrification were observed and suggest that heterotrophic denitrifiers might co-occur in the green berries, although the physiology and activity of facultative anaerobes in these aggregates remains uncharacterized. Nitrogen fixation in the surface ocean was long thought to be driven by filamentous cyanobacterial aggregates, though recent work has demonstrated the importance of unicellular diazotrophic cyanobacteria (UCYN) from the order Chroococcales. The green berries serve as a useful contrast to studies of open ocean UCYN and may provide a tractable model system to investigate microbial dynamics within phytoplankton aggregates, a phenomenon of global importance to the flux of particulate organic carbon and nitrogen in surface waters.

The effects of marine sand and gravel extraction on the sediment composition and macrofaunal community of a commercial dredging site (15 years post-dredging).

A prediction that faunal recovery of a marine aggregate extraction site subjected to high dredging intensity was likely to take 15-20 years was investigated. Samples were collected at the high dredging intensity site and two reference sites in 2011 (15 years post-dredging). Results indicated that the high site had similar sediment characteristics to the reference sites by 2011. Macrofaunal data analyses showed no difference between the values of all calculated univariate measures (abundance, number of taxa, biomass and evenness) between the high and reference sites. Multivariate analyses found that the macrofaunal community at the high site was comparable to those of the reference sites by 2011. Overall, the results supported the predicted recovery time. The findings of the study suggest that persistent physical impacts prolonged the biological recovery of the high site.

Setting limits for acceptable change in sediment particle size composition: testing a new approach to managing marine aggregate dredging.

A baseline dataset from 2005 was used to identify the spatial distribution of macrofaunal assemblages across the eastern English Channel. The range of sediment composition found in association with each assemblage was used to define limits for acceptable change at ten licensed marine aggregate extraction areas. Sediment data acquired in 2010, 4 years after the onset of dredging, were used to assess whether conditions remained within the acceptable limits. Despite the observed changes in sediment composition, the composition of sediments in and around nine extraction areas remained within pre-defined acceptable limits. At the tenth site, some of the observed changes within the licence area were judged to have gone beyond the acceptable limits. Implications of the changes are discussed, and appropriate management measures identified. The approach taken in this study offers a simple, objective and cost-effective method for assessing the significance of change, and could simplify the existing monitoring regime.

Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism.

Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro it led to exopolymer formation and aggregation of these algal cells to form marine snow particles. M. adhaerens HP15 is a free-living, motile, rod-shaped, Gram-negative gammaproteobacterium, which was originally isolated from marine particles sampled in the German Wadden Sea. M. adhaerens HP15 grows heterotrophically on various media, is easy to access genetically, and serves as a model organism to investigate the cellular and molecular interactions with the diatom Thalassiosira weissflogii. Here we describe the complete and annotated genome sequence of M. adhaerens HP15 as well as some details on flagella-associated genes. M. adhaerens HP15 possesses three replicons; the chromosome comprises 4,422,725 bp and codes for 4,180 protein-coding genes, 51 tRNAs and three rRNA operons, while the two circular plasmids are ~187 kb and ~42 kb in size and contain 178 and 52 protein-coding genes, respectively.