Cover Crop Amendments and Lettuce Plant Growth Stages Alter Rhizobacterial Properties and Roles in Plant Performance.

Lettuce plants respond differently to cover crop amendments by altering their biomass and nitrogen uptake (Nup) at different plant growth stages. Nonetheless, plant-microbe interactions involved in the alterations are scarcely studied. This study elucidated how the properties of the soil microbial community inhabiting the rhizosphere associated with lettuce (Lactuca sativa L. var. crispa "Red fire") change during plant growth stages. Lettuce plants were cultivated in control soil and soil with rye, hairy vetch (HV), and rye plus HV (rye + HV) cover crop amendments. Rhizosphere soil samples were collected at the mid-growth and mature stages of plant development. DNA was extracted from the soil, and the 16S rRNA region was amplified using polymerase chain reaction to analyze bacterial genes and community structures and functions. Cover crop amendments and plant growth stages increased or decreased the relative abundances of bacterial taxa at the genus level. Plant maturity decreased 16S rRNA gene expression and the number of bacterial operational taxonomic units in all treatments. The unique, core, and shared taxa with low relative abundances may be associated with improved lettuce Nup and lettuce shoot and root biomass at each plant growth stage under different cover crop amendments based on multivariate analysis between plant indicators and bacterial genera groups. This study revealed the importance of bacterial groups with low relative abundance in plant-microbe interactions; such bacteria may promote the cover crop application for high lettuce productivity.

Reniform Nematode Management Using Winter Crop Rotation and Residue Incorporation Methods in Greenhouse Experiments.

Rotylenchulus reniformis (reniform nematode, RN) is an important pathogen in cotton production. Cultural practices such as crop rotation and biofumigation-management of soil pathogens by biocidal compounds from crop residues-may help manage RN. The objective of this study was to evaluate the efficacy of winter crops for RN management through combinations of rotation and crop residue incorporation in a cotton greenhouse experiment. A total of 10 treatments were evaluated in soil inoculated with RN: three winter crops (carinata, oat, or hairy vetch) grown in rotation with no shoot organic matter (OM) incorporated (1-3), fresh shoot OM incorporated (4-6), or dry shoot OM incorporated (7-9), and a fallow control (10). Roots were re-incorporated in all treatments except fallow. Subsequently, cotton was grown. Oat and fallow were better rotation crops to lower soil RN abundances at winter crop termination than hairy vetch and carinata. After the OM incorporation treatments and cotton growth, oat was generally more effective at managing RN in cotton than carinata or hairy vetch. Within each crop, incorporation treatment generally did not affect RN management. Cotton growth was not consistently affected by the treatments.

Management of Reniform Nematode in Cotton Using Winter Crop Residue Amendments Under Greenhouse Conditions.

Rotylenchulus reniformis (reniform nematode, RN) is among the most important nematodes affecting cotton. Cultural practices, such as rotation and soil amendment, are established methods for managing RN. Management may be enhanced if crop residue has biofumigant properties against RN. The objective was to evaluate the efficacy of winter crop amendments for managing RN in the greenhouse. Reniform nematode-infested soil was amended with dry or fresh organic matter (OM, 2% w/w) from winter crops - canola, carinata, hairy vetch, oat, or no crop. Cotton was subsequently grown in this soil. Independent of the crop, dry OM amendments were more effective than no amendment at managing RN, while fresh OM amendments were not. Soil and root RN abundances and reproduction factors were generally lower in Trials 1 and 3 for dry OM than fresh OM amendments or control without OM. In Trial 2, none of the OM treatments reduced RN parameters compared with no OM control. In general, when compared to plants without RN or OM, RN did not produce significant changes in growth parameters but did affect physiology (Soil Plant Analysis Development, or SPAD, values). In conclusion, dry OM amendments can help manage RN, crop growth does not always relate to RN abundances, and SPAD values could help indicate RN presence.

A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.).

BACKGROUND: Due to its strong abiotic stress tolerance, common vetch is widely cultivated as a green manure and forage crop in grass and crop rotation systems. The comprehensive molecular mechanisms activated in common vetch during cold adaptation remain unknown. RESULTS: We investigated physiological responses and transcriptome profiles of cold-sensitive (Lanjian No. 1) and cold-tolerant (Lanjian No. 3) cultivars during cold acclimation to explore the molecular mechanisms of cold acclimation. In total, 2681 and 2352 differentially expressed genes (DEGs) were identified in Lanjian No. 1 and Lanjian No. 3, respectively; 7532 DEGs were identified in both lines. DEGs involved in "plant hormone signal transduction" were significantly enriched during cold treatment, and 115 DEGs involved in cold-processed hormone signal transduction were identified. Common vetch increased the level of indoleacetic acid (IAA) by upregulating the transcriptional regulator Aux/IAA and downregulating GH3, endowing it with stronger cold tolerance. An auxin-related DEG was overexpressed in yeast and shown to possess a biological function conferring cold tolerance. CONCLUSION: This study identifies specific genes involved in Ca2+ signaling, redox regulation, circadian clock, plant hormones, and transcription factors whose transcriptional differentiation during cold acclimation may improve cold tolerance and contributes to the understanding of common and unique molecular mechanisms of cold acclimation in common vetch. The candidate genes identified here also provide valuable resources for further functional genomic and breeding studies.

Genome survey sequencing of common vetch (Vicia sativa L.) and genetic diversity analysis of Chinese germplasm with genomic SSR markers.

BACKGROUND: Common vetch (Vicia sativa L.) is an annual legume with excellent suitability in cold and dry regions. Despite its great applied potential, the genomic information regarding common vetch currently remains unavailable. METHODS AND RESULTS: In the present study, the whole genome survey of common vetch was performed using the next-generation sequencing (NGS). A total of 79.84 Gbp high quality sequence data were obtained and assembled into 3,754,145 scaffolds with an N50 length of 3556 bp. According to the K-mer analyses, the genome size, heterozygosity rate and GC content of common vetch genome were estimated to be 1568 Mbp, 0.4345 and 35%, respectively. In addition, a total of 76,810 putative simple sequence repeats (SSRs) were identified. Among them, dinucleotide was the most abundant SSR type (44.94%), followed by Tri- (35.82%), Tetra- (13.22%), Penta- (4.47%) and Hexanucleotide (1.54%). Furthermore, a total of 58,175 SSR primer pairs were designed and ten of them were validated in Chinese common vetch. Further analysis showed that Chinese common vetch harbored high genetic diversity and could be clustered into two main subgroups. CONCLUSION: This is the first report about the genome features of common vetch, and the information will help to design whole genome sequencing strategies. The newly identified SSRs in this study provide basic molecular markers for germplasm characterization, genetic diversity and QTL mapping studies for common vetch.

Transcriptome and Coexpression Network Analyses Provide In-Sights into the Molecular Mechanisms of Hydrogen Cyanide Synthesis during Seed Development in Common Vetch (Vicia sativa L.).

The common vetch (Vicia sativa L.) seed is an ideal plant-based protein food for humans, but its edible value is mainly limited by the presence of cyanogenic glycosides that hydrolyze to produce toxic hydrogen cyanide (HCN), and the genes that regulate HCN synthesis in common vetch are unknown. In this study, seeds from common vetch at 5, 10, 15, 20, 25, 30, and 35 days after anthesis were sampled, and the seven stages were further divided into five developmental stages, S1, S2, S3, S4, and S5, based on morphological and transcriptome analyses. A total of 16,403 differentially expressed genes were identified in the five developmental stages. The HCN contents of seeds in these five stages were determined by alkaline titration, and weighted gene coexpression network analysis was used to explain the molecular regulatory mechanism of HCN synthesis in common vetch seeds. Eighteen key regulatory genes for HCN synthesis were identified, including the VsGT2, VsGT17 and CYP71A genes, as well as the VsGT1 gene family. VsGT1, VsGT2, VsGT17 and CYP71A jointly promoted HCN synthesis, from 5 to 25 days after anthesis, with VsGT1-1, VsGT1-4, VsGT1-11 and VsGT1-14 playing major roles. The HCN synthesis was mainly regulated by VsGT1, from 25 to 35 days after anthesis. As the expression level of VsGT1 decreased, the HCN content no longer increased. In-depth elucidation of seed HCN synthesis lays the foundations for breeding common vetch with low HCN content.

Comparative Transcriptomic Analysis of Root and Leaf Transcript Profiles Reveals the Coordinated Mechanisms in Response to Salinity Stress in Common Vetch.

Owing to its strong environmental suitability to adverse abiotic stress conditions, common vetch (Vicia sativa) is grown worldwide for both forage and green manure purposes and is an important protein source for human consumption and livestock feed. The germination of common vetch seeds and growth of seedlings are severely affected by salinity stress, and the response of common vetch to salinity stress at the molecular level is still poorly understood. In this study, we report the first comparative transcriptomic analysis of the leaves and roots of common vetch under salinity stress. A total of 6361 differentially expressed genes were identified in leaves and roots. In the roots, the stress response was dominated by genes involved in peroxidase activity. However, the genes in leaves focused mainly on Ca2+ transport. Overexpression of six salinity-inducible transcription factors in yeast further confirmed their biological functions in the salinity stress response. Our study provides the most comprehensive transcriptomic analysis of common vetch leaf and root responses to salinity stress. Our findings broaden the knowledge of the common and distinct intrinsic molecular mechanisms within the leaves and roots of common vetch and could help to develop common vetch cultivars with high salinity tolerance.

Vicia plants-A comprehensive review on chemical composition and phytopharmacology.

The plants belonging to the genus Vicia are of great interest as a source of many bioactive compounds and micronutrients. A snapshot of their cultivation, habitat, main components, from which essential oils can be obtained, is given. The traditional medicinal uses of Vicia plants are also reported, as well as the wide spectrum of the main biological activities attributed to Vicia plants is discussed regarding potential health beneficial properties, in particular anti-Parkinson, anticholinesterase, antidepressant, anticonvulsant, antimicrobial, cytotoxic, antioxidant, antiinflammatory and antinociceptive, antidiabetic, antihemolytic, anticoagulant, estrogenic, diuretic, antihypoxic activities.

First Report of Leaf Spot Caused by Ramularia sphaeroidea on Vicia villosa var. glabrescens in China.

Hairy vetch Vicia villosa Roth is widely grown in southwestern China for green manure and forage. In December 2019, a leaf disease occurred on 80% plants of V. villosa var. glabrescens in an eight-hectare field in Qujing(N 25°28'12″, E 103°36'22″), Yunnan Province, China. The disease leaves had irregular, brown to dark brown leaf spots with white mold. Twenty diseased leaves from five plants were randomly collected from the field. The leaf samples were sterilized with 75% ethanol for 30 s and 1% NaClO for 75 s, rinsed three times with sterile distilled water, surface water removed with sterile filter paper, and placed onto potato dextrose agar (PDA) for culture at 20oC. The obtained fungal isolates were purified by transferring 1 to 2 mm hyphal tips onto fresh PDA plates and cultured under the same temperature condition. The isolates grew slowly, at a rate of 0.7 mm/d at 20℃ for 4 weeks. A diseased plant specimen (accession MHLZU19326) and three isolates (accessions YN1931401, YN1931402, and YN1931403) were deposited in the Mycological Herbarium of Lanzhou University (MHLZU). Conidia from the PDA cultures were hyaline, spherical, smooth, aseptate, and measured 2.13 to 3.67 × 4.56 to 5.77 µm (n = 50). Conidiophores were hyaline, smooth, and straight. DNA of purified isolates was extracted and the nuclear ribosomal internal transcribed spacer (ITS), tef1-α, his3 and gapdh genes were amplified and sequenced with primers ITS1/ITS4 (White et al. 1990), EF1-728F/EF2 (Carbone and Kohn 1999;O'Donnell et al. 1998), CylH3F/CylH3R (Crous et al. 2004), and gpd1/gpd2 (Berbee et al. 1999), respectively. DNA sequences of isolates YN1931401, YN1931402, and YN1931403 were deposited in GenBank for the ITS (accessions MW092181, MW332205, and MW332206), tef1-α (MW448172 to MW448174), his3 (MW448175 to MW448177), and gapdh (MW448178 to MW448180). These sequences had the highest similarities with sequences of Ramularia sphaeroidea Sacc. in GenBank, 99%(514∕516, 515∕517, and 514∕517 bp) for ITS, 99% (402∕403, 403∕405, and 405∕405bp) for tef1-α, 99% (377∕378, 378∕378, and 376∕378bp) for his3, and 100% (558∕557, 557∕559 and 561∕565 bp) for gapdh . A phylogenetic tree generated with the sequences clustered the fungus closely with R. sphaeroidea. Infection experiments were carried out with 50 plants of V. villosa var. glabrescens in 10 pots. A conidial suspension of 1. 0 × 106 conidia/ml with 0.01% Tween 80 was prepared by adding sterile distilled water to the YN1931401 culture and scraping with a sterile scalpel. The leaves of 25 healthy plants were sprayed with the conidial suspension, and those of the 25 control plants were sprayed with sterile water. All plants were covered with clear polyethylene bags for 3 days to maintain high humidity and then grown in a greenhouse at diurnal cycles of 18℃ for 18h with light and 22℃ for 6 h in dark. Ten days post-inoculation, the inoculated plants exhibited brown lesions similar to the symptoms observed in the field (Fig. 1-F), whereas no symptoms appeared on the control plants. The same fungus was re-isolated and identified as described above. R. sphaeroidea has been reported on V. fabae and V. sativa in Ethiopia and Israel (Braun 1998), on various Vicia species including V. villosa in California, the United States (Koike et al. 2004) and on V. craccain China (Zhang et al. 2006), but to our knowledge, this is the first report of this fungus causing leaf spot on V. villosa in China.

Effects of cultivar and growing degree day accumulations on forage partitioning and nutritive value of common vetch (Vicia sativa L.) on the Tibetan plateau.

BACKGROUND: The use of common vetch in grassland-livestock systems has expanded greatly within recent years, partly because of its value as a high-quality forage crop but also to improve the soil nitrogen availability. In-field estimation of forage yield potential and nutritional characteristics is required for providing management decision to farmers on how to optimize the management and use of common vetch forages. The aim of this work was to study changes in forage partitioning and nutritive value responses of a late-maturing and an early maturing cultivar of common vetch in a two-year study on the Tibetan Plateau. RESULTS: This study provided evidence for differential patterns of forage accumulation for common vetch with contrasting maturity over 2 years. The late-maturing cultivar exhibited greater forage yield and a lower proportion of pods, compared to the early maturing cultivar. There was a tendency towards lower forage nutritive value with the late-maturing cultivar. Regressions of nutritive value parameters of common vetch forages on growing degree days were explained by the cubic (P < 0.001) models, all with high coefficients of determination (R2 ≥ 0.792). CONCLUSION: This study shows that the late-maturing cultivar harvested at end of the pod-filling stage produces high forage yield, increasing the availability of high-quality forage for ruminants, thereby improving the self-sufficiency of farmers, in terms of forage yield and high-concentration protein. For early maturing cultivars, it may be better to harvest at the early flowering stage for better nutritive value and in part to enable a subsequent double crop of oat. © 2020 Society of Chemical Industry.

Foraging behaviour, digestion and growth performance of sheep grazing on dried vetch pasture cropped under conservation agriculture.

This study aimed to investigate the replacement value of half time grazing of wheat stubbles by vetch, which had been cropped under the context of conservation agriculture (CA). Three grazing treatments were evaluated on Barbarine lambs (initial BW 18 ± 1.42 kg). Treatment 1 consists of 6-hr grazing on dried vetch only (V). For treatment 2, the sheep were grazing 3 hr on wheat stubbles in morning and 3 hr on dried vetch in the afternoon (VWS). Treatment 3 consists of 6-hr grazing of wheat stubbles only (WS). At grain maturity stage, biomass yield of vetch averaged 7 tons DM/ha allowing a grazing period of 2 consecutive months. Along this period, vetch conserved its pods indehiscent. Biomass and nutritive value of vetch and wheat stubbles were decreasing from the start to the end of the grazing period. Residual biomass was higher in vetch and wheat stubble assigned to treatment VWS. WS lambs spent more time on walking and standing, while V and VWS lambs allocated more time on biomass uptake. The DM, OM and CP intakes were higher in animal grazing vetch alone or combined to wheat stubble. Rumen fermentation parameters (pH, ammonia nitrogen concentration and protozoa count) were not affected (p > .05) by any of the three treatments. The average daily gain of lambs on V and VWS lambs was three times greater (p < .05) than that of WS lambs (164, 152 and 49.5 g respectively). Cold carcass yield averaged 444, 428 and 388 g/ kg for lambs assigned to V, VWS and WS treatments respectively. It is concluded that grazing vetch alone or combined with WS increased substantially the growth performance and carcass yield of lambs compared with WS grazing only. Therefore, dried vetch grazing could be a solution to make possible mulching and biomass uptake by sheep under the context of CA.

Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L.

BACKGROUND: Common vetch (Vicia sativa L.) is an important self-pollinating annual forage legume and is of interest for drought prone regions as a protein source to feed livestock and human consumption. However, the development and production of common vetch are negatively affected by drought stress. Plants have evolved common or distinct metabolic pathways between the aboveground and underground in response to drought stress. Little is known regarding the coordinated response of aboveground and underground tissues of common vetch to drought stress. RESULTS: Our results showed that a total of 30,427 full-length transcripts were identified in 12 samples, with an average length of 2278.89 bp. Global transcriptional profiles of the above 12 samples were then analysed via Illumina-Seq. A total of 3464 and 3062 differentially expressed genes (DEGs) were identified in the leaves and roots, respectively. Gene Ontology (GO) enrichment analyses identified that the dehydrin genes and Δ1-pyrroline-5-carboxylate synthase were induced for the biosynthesis of proline and water conservation. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis results indicated that the DEGs were significantly enriched in hormone signal transduction, starch and sucrose metabolism, and arginine and proline metabolism, and various drought response candidate genes were also identified. Abscisic acid (ABA; the AREB/ABF-SnRK2 pathway) regulates the activity of AMY3 and BAM1 to induce starch degradation in leaves and increase carbon export to roots, which may be associated with the drought stress responses in common vetch. Among the co-induced transcription factors (TFs), AREB/ABF, bHLH, MYB, WRKY, and AP2/ERF had divergent expression patterns and may be key in the crosstalk between leaves and roots during adaption to drought stress. In transgenic yeast, the overexpression of four TFs increased yeast tolerance to osmotic stresses. CONCLUSION: The multipronged approach identified in the leaves and roots broadens our understanding of the coordinated mechanisms of drought response in common vetch, and further provides targets to improve drought resistance through genetic engineering.

Molecular bases for drought tolerance in common vetch: designing new molecular breeding tools.

BACKGROUND: Common vetch (Vicia sativa L.) is a forage grain legume of high protein content and high nitrogen fixation, relevant in sustainable agriculture systems. Drought is the main limiting factor of this crop yield. Genetic resources collections are essential to provide genetic variability for breeding. The analysis of drought associated parameters has allowed us to identify drought tolerant and sensitive ecotypes in a vetch core collection. RESULTS: To understand the mechanisms involved in drought response we analysed transcriptomic differences between tolerant and sensitive accessions. Polymorphic variants (SNPs and SSRs) in these differential expressed genes (DEGs) have also been analysed for the design of drought-associated markers. A total of 1332 transcripts were commonly deregulated in both genotypes under drought. To know the drought adaptive response, we also analysed DEGs between accessions. A total of 2646 transcripts are DEG between sensitive and tolerant ecotypes, in watered and drought conditions, including important genes involved in redox homeostasis, cell wall modifications and stress-response. The integration of this functional and genetic information will contribute to understand the molecular mechanisms of drought response and the adaptive mechanisms of drought tolerance in common vetch. The identification of polymorphic variants in these DEGs has also been screened for the design of drought-associated markers that could be used in future breeding program strategies. CONCLUSIONS: Our studies shed light for the first time in common vetch about the genes and pathways associated with drought tolerance. In addition, we identify over 100 potential drought associated polymorphism, as SNPs or SSRs, which are differently present in drought and tolerant genotypes. The use of these molecular markers for trait prediction would enable the development of genomic tools for future engineering strategies by screening of germplasm crop collections for traits related with crop drought resilience, adaptability or yield in vetch.

Rapid and visual detection of milk vetch dwarf virus using recombinase polymerase amplification combined with lateral flow strips.

BACKGROUND: Milk vetch dwarf virus (MDV) is an important ssDNA virus which causes yellowing, stunting and leaf rolling symptoms on legumes. In China, the virus causes great economic losses and has recently been found to infect tobacco. The expansion of its host range and its ability to spread rapidly has given rise to the urgent need for a sensitive, specific and rapid diagnostic assay that can assist in effective disease control. METHODS: Assays based on the polymerase chain reaction combined with lateral flow strip detection (PCR-LFS) and recombinase polymerase amplification combined with LFS (RPA-LFS) were developed targeting the coat protein (CP) gene of MDV. RESULTS: The PCR and RPA assays could detect respectively 103 copies or 101 copies of MDV by agarose gel electrophoresis. The PCR-LFS and RPA-LFS assays developed could both detect as few as 101 copies per reaction at 37 °C. Both methods could detect MDV in crude leaf extracts. CONCLUSIONS: The RPA-LFS assay developed is a rapid, sensitive and specific method for detecting MDV, which is convenient and has great potential for use in the field.

Reduction mechanism of Cd accumulation in rice grain by Chinese milk vetch residue: Insight into microbial community.

Chinese milk vetch is an efficient approach to reduce Cd accumulation in rice, nevertheless, its reduction mechanism is not well understood. In this study, we investigated the rice grain Cd, soil properties and microbial community in a Cd-polluted paddy field amended with milk vetch residue (MV) or without (CK) during rice growth period. We found that milk vetch residue averagely decreased the Cd content in rice grain by 45%. Decrease of Cd in rice mainly attributed to the inhibition of Cd activation by milk vetch residue at heading stage probably by the formation of HA-Cd (Humic Acid) and CdS. Increased pH and organic matter (OM) promoted the reduction of available Cd. In addition, nonmetric multidimensional scaling (NMDS) analysis revealed that microbial community structure was significantly different between MV and CK treatment (r = 0.187, p = 0.002), and the core functions of differentially abundant genera were mainly associated with N-cycling, organic matter degradation and sulfate-reducing. The application of milk vetch residue increased the abundance of sulfate-reducing bacteria (SRB) by 8-112% during the rice growth period, which may involve in promoting the transformation of Cd to a more stably residual Cd (CdS). Canonical correspondence analysis (CCA) and mantel test analysis indicated that available K (p = 0.004) and available N (p = 0.005) were the key environmental factors of shaping the SRB. Altogether, changes in soil properties affected microbial structure and functional characteristics, especially the response of SRB in MV treatment would provide valuable insights into reducing the bioavailability of Cd in soil.

Substitution of leguminous forage for oat hay improves nitrogen utilization efficiency of crossbred Simmental calves.

Low nitrogen (N) utilization efficiency (NUE, the ratio of retained N to N intake [NI]) of ruminants is always a potential dietary protein wastage as well as a global environmental problem, and dietary N manipulation is the most effective way to improve NUE. We conducted 2 experiments to investigate the effects of replacing oat hay by leguminous forages (alfalfa hay [AH] in experiment [Exp] 1 and common vetch hay [CVH] in Exp 2) with 4 levels (0%, 8%, 16% or 24% AH and 0%, 10%, 20% or 30% CVH on dry matter [DM] basis) at the same crude protein (135 g/kg DM) and metabolizable energy (10.1 MJ/kg DM) on feed intake, N metabolism, NUE and blood composition of crossbred Simmental calves. Sixteen calves of each Exp were assigned to the four diets in a randomized block design. Faecal N (FN) output and the ratio of FN to NI increased with increasing AH/CVH proportions, whereas urinary N (UN) output, the ratio of UN to NI, and the ruminal ammonia N concentration gradually decreased in both experiments. Nutrient digestibility (DM, organic matter [OM] and neutral detergent fibre [NDF]) of calves showed a parabolic trend with gradually increasing AH/CVH proportions. The highest values of nutrient digestibility (DM, OM and NDF) of calves were observed in 16% AH in Exp 1 and 20% CVH in Exp 2. Our findings suggest that 16% and 20% substitution (as a percentage of the total DM allowance) of AH and CVH, respectively, for oat hay are optimal diets to improve NUE and reduce the potential impact of N excretion from livestock farming on the environment through shifting routes of N from urine to faeces without negative effects on live weight gain and nutrient digestibility of crossbred Simmental calves in dryland environments.

Utilization of liquid pig manure for resource cycling agriculture in rice-green manure crop rotation in South Korea.

A 2-year field experiment was carried out on rice (Oryza sativa, Japonica type) cultivation in South Korea. The objective of this study was to investigate the effect of application of liquid pig manure on biomass production and nutrient supply of green barley (Hordeum vulgare L.) and hairy vetch (Vicia villosa Roth) green manure crops and to evaluate the effect of nutrients supplied from these sources on rice yield and soil quality in a rice-green manure crop rotation system. Over the 2-year study period, application of liquid pig manure increased biomass production of green manure crops of barley and hairy vetch by more than 216% and 135%, respectively, compared with without liquid pig manure. Moreover, the results showed that the application of liquid pig manure significantly increased the nutrient supply levels in green barley- and hairy vetch-treated areas. Positive effects related to nutrient supply in green barley and hairy vetch treated with liquid pig manure were observed on rice yield, soil chemical characteristics, and microbial biomass C and N contents. In conclusion, the addition of liquid pig manure systems using green manure crops of green barley and hairy vetch improved rice productivity and soil quality. It is suggested that these combinations can be effective in developing resource cycling agriculture in a rice-green manure crop rotation system as it reduces the need for inorganic fertilizer.

Full genome sequence analysis and putative host-shifting of Milk vetch dwarf virus infecting tobacco (Nicotiana tabacum) in China.

BACKGROUND: Tobacco production in China has been affected by plant viruses with Milk vetch dwarf virus (MDV) as a recent invader posing serious concern. According to most of the studies, MDV mainly infects hosts from Fabaceae family but in our previous study we reported its infection in tobacco plant (Nicotiana tabacum L.) in Shandong province. FINDINGS: In current study (2016-2017), tobacco plants (Nicotiana tabacum) with severe stunting, yellowing and axillary bunch of new leaves were observed in Zhengning, Gansu province. Isolate GSZN yielded into eight genomic circular single-stranded DNA components while no alphasatellite DNA was obtained. High percent identity of this isolate was recorded in overall nucleotide and amino acid assembly with reported MDV isolates worldwide. Phylogenetic analysis fetched into a separate sub-clade comprising of new isolate along with other tobacco infecting isolates of MDV. While recombination was predicted in DNA-C encoding Clink protein and DNA-U1, which may attribute towards the potential host-shifting phenomenon and ability of this virus to expand its host range. CONCLUSION: To our knowledge this is the first full genome annotation of a Nanovirus, infecting tobacco in natural field conditions, also this is the first extended analysis on host-shifting behavior of MDV.

De Novo Assembly and Discovery of Genes That Involved in Drought Tolerance in the Common Vetch.

The common vetch (Vicia sativa) is often used as feed for livestock because of its high nutritional value. However, drought stress reduces forage production through plant damage. Here, we studied the transcriptional profiles of common vetch exposed to drought in order to understand the molecular mechanisms of drought tolerance in this species. The genome of the common vetch has not been sequenced, therefore we used Illumina sequencing to generate de novo transcriptomes. Nearly 500 million clean reads were used to generate 174,636 transcripts, including 122,299 unigenes. In addition, 5313 transcription factors were identified and these transcription factors were classified into 79 different gene families. We also identified 11,181 SSR loci from di- to hexa-nucleotides whose repeat number was greater than five. On the basis of differentially expressed genes, Gene Ontology analysis identified many drought-relevant categories, including "oxidation-reduction process", "lipid metabolic process" and "oxidoreductase activity". In addition to these, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis identified pathways, such as "Plant hormone signal transduction", "Glycolysis/Gluconeogenesis" and "Phenylpropanoid biosynthesis", as differentially expressed in the plants exposed to drought. The expression results in this study will be useful for further extending our knowledge on the drought tolerance of common vetch.

Morphological fractions, chemical composition and in vitro digestibility of stover of four common vetch varieties grown on the Tibetan plateau.

This study evaluated the varietal variability and interrelationship of the grain and stover yields, and stover quality characteristics of four common vetch varieties (three improved varieties and one local variety) used on the Tibetan Plateau. Stover quality attributes determined included chemical composition, in vitro true digestibility of dry matter (IVTD) and neutral detergent fibre (dNDF). The improved varieties were superior to the local variety in grain yield, harvest index and potential utility index (PUI). The wide ranges in the proportions of leaf (24.3%-34.6%), pod (22.0%-45.6%) and stem (29.5%-44.7%) fractions were observed. Significant varietal differences (p < .001) were observed for the whole-stover content of crude protein [CP; 78.1-101 g/kg dry matter (DM)], neutral detergent fibre (aNDF; 520-564 g/kg DM), acid detergent fibre (ADF; 520-564 g/kg DM), IVTD (597-658 g/kg DM) and dNDF (305-384 g/kg aNDF). The leaf fraction had the highest levels of CP, IVTD and dNDF, while the highest contents of aNDF and ADF were observed in the stem fraction. Canonical correlation analysis showed that significant (p < .001) correlations between the quality attributes of whole stover and proportions and quality attributes of stover morphological fractions. Pearson correlation between the grain and stover yield was negative and significant (r = -.295; p = .001), while the correlations between the grain/stover yield and stover quality traits were positive or non-significant. Ranking of the varieties differed when grain yield, PUI and stover quality scores were investigated. Of the varieties tested, Lanjian No.2 has the best potential for use as a ruminant feed, as indicated by PUI and stover quality.