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Improving the accuracy of NMR structures of large proteins using pseudocontact shifts as long-range restraints.
Gaponenko, Vadim; Sarma, Siddhartha P; Altieri, Amanda S; Horita, David A; Li, Jess; Byrd, R Andrew.
Afiliação
  • Gaponenko V; Structural Biophysics Laboratory, National Cancer Institute, P.O. Box B, Frederick, MD 21702-1201, USA.
J Biomol NMR ; 28(3): 205-12, 2004 Mar.
Article em En | MEDLINE | ID: mdl-14752254
We demonstrate improved accuracy in protein structure determination for large (>/=30 kDa), deuterated proteins (e.g. STAT4(NT)) via the combination of pseudocontact shifts for amide and methyl protons with the available NOEs in methyl-protonated proteins. The improved accuracy is cross validated by Q-factors determined from residual dipolar couplings measured as a result of magnetic susceptibility alignment. The paramagnet is introduced via binding to thiol-reactive EDTA, and multiple sites can be serially engineered to obtain data from alternative orientations of the paramagnetic anisotropic susceptibility tensor. The technique is advantageous for systems where the target protein has strong interactions with known alignment media.
Assuntos
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Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Proteínas / Modelos Moleculares / Ressonância Magnética Nuclear Biomolecular Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2004 Tipo de documento: Article
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Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Proteínas / Modelos Moleculares / Ressonância Magnética Nuclear Biomolecular Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2004 Tipo de documento: Article