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The draft genome of the large yellow croaker reveals well-developed innate immunity.
Wu, Changwen; Zhang, Di; Kan, Mengyuan; Lv, Zhengmin; Zhu, Aiyi; Su, Yongquan; Zhou, Daizhan; Zhang, Jianshe; Zhang, Zhou; Xu, Meiying; Jiang, Lihua; Guo, Baoying; Wang, Ting; Chi, Changfeng; Mao, Yong; Zhou, Jiajian; Yu, Xinxiu; Wang, Hailing; Weng, Xiaoling; Jin, Jason Gang; Ye, Junyi; He, Lin; Liu, Yun.
Afiliação
  • Wu C; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Zhang D; Bio-X Center, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200030, China.
  • Kan M; Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China.
  • Lv Z; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Zhu A; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Su Y; College of Ocean and Earth Sciences, Xiamen University, Xiamen 361005, China.
  • Zhou D; Bio-X Center, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200030, China.
  • Zhang J; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Zhang Z; Bio-X Center, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200030, China.
  • Xu M; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Jiang L; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Guo B; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Wang T; Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China.
  • Chi C; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Mao Y; College of Ocean and Earth Sciences, Xiamen University, Xiamen 361005, China.
  • Zhou J; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Yu X; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Wang H; National Engineering Research Center of Marine Facilities Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
  • Weng X; Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China.
  • Jin JG; ShanghaiBio Corporation, 675 US Highway One, North Brunswick, New Jersey 08902, USA.
  • Ye J; Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China.
  • He L; Bio-X Center, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200030, China.
  • Liu Y; Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China.
Nat Commun ; 5: 5227, 2014 Nov 19.
Article em En | MEDLINE | ID: mdl-25407894
ABSTRACT
The large yellow croaker, Larimichthys crocea, is one of the most economically important marine fish species endemic to China. Its wild stocks have severely suffered from overfishing, and the aquacultured species are vulnerable to various marine pathogens. Here we report the creation of a draft genome of a wild large yellow croaker using a whole-genome sequencing strategy. We estimate the genome size to be 728 Mb with 19,362 protein-coding genes. Phylogenetic analysis shows that the stickleback is most closely related to the large yellow croaker. Rapidly evolving genes under positive selection are significantly enriched in pathways related to innate immunity. We also confirm the existence of several genes and identify the expansion of gene families that are important for innate immunity. Our results may reflect a well-developed innate immune system in the large yellow croaker, which could aid in the development of wild resource preservation and mariculture strategies.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perciformes / Imunidade Inata Limite: Animals Idioma: En Ano de publicação: 2014 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perciformes / Imunidade Inata Limite: Animals Idioma: En Ano de publicação: 2014 Tipo de documento: Article