Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.
Nucleic Acids Res
; 43(12): e81, 2015 Jul 13.
Article
em En
| MEDLINE
| ID: mdl-25813045
ABSTRACT
We present a capture-based approach for bisulfite-converted DNA that allows interrogation of pre-defined genomic locations, allowing quantitative and qualitative assessments of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) at CG dinucleotides and in non-CG contexts (CHG, CHH) in mammalian and plant genomes. We show the technique works robustly and reproducibly using as little as 500 ng of starting DNA, with results correlating well with whole genome bisulfite sequencing data, and demonstrate that human DNA can be tested in samples contaminated with microbial DNA. This targeting approach will allow cell type-specific designs to maximize the value of 5mC and 5hmC sequencing.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Análise de Sequência de DNA
/
Genoma de Planta
/
Citosina
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5-Metilcitosina
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Sequenciamento de Nucleotídeos em Larga Escala
Tipo de estudo:
Qualitative_research
Limite:
Animals
/
Humans
Idioma:
En
Ano de publicação:
2015
Tipo de documento:
Article