A complete bacterial genome assembled de novo using only nanopore sequencing data.
Nat Methods
; 12(8): 733-5, 2015 Aug.
Article
em En
| MEDLINE
| ID: mdl-26076426
ABSTRACT
We have assembled de novo the Escherichia coli K-12 MG1655 chromosome in a single 4.6-Mb contig using only nanopore data. Our method has three stages (i) overlaps are detected between reads and then corrected by a multiple-alignment process; (ii) corrected reads are assembled using the Celera Assembler; and (iii) the assembly is polished using a probabilistic model of the signal-level data. The assembly reconstructs gene order and has 99.5% nucleotide identity.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Genoma Bacteriano
/
Análise de Sequência de DNA
/
Biologia Computacional
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Nanotecnologia
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Escherichia coli K12
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Nanoporos
Tipo de estudo:
Prognostic_studies
Idioma:
En
Ano de publicação:
2015
Tipo de documento:
Article