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JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez, Nicolas; Thomas, Alex; Watanabe, Leandro; Vazirabad, Ibrahim Y; Kofia, Victor; Gómez, Harold F; Mittag, Florian; Matthes, Jakob; Rudolph, Jan; Wrzodek, Finja; Netz, Eugen; Diamantikos, Alexander; Eichner, Johannes; Keller, Roland; Wrzodek, Clemens; Fröhlich, Sebastian; Lewis, Nathan E; Myers, Chris J; Le Novère, Nicolas; Palsson, Bernhard Ø; Hucka, Michael; Dräger, Andreas.
Afiliação
  • Rodriguez N; European Bioinformatics Institute (EBI), Hinxton, UK, Babraham Institute, Babraham Research Campus, Cambridge, UK.
  • Thomas A; University of California, San Diego, La Jolla, CA, USA, Novo Nordisk Foundation Center for Biosustainability, University of California, San Diego, La Jolla, CA, USA.
  • Watanabe L; The University of Utah, Salt Lake City, UT, USA.
  • Vazirabad IY; Marquette University, Milwaukee, WI, USA.
  • Kofia V; The University of Toronto, Toronto, ON, Canada.
  • Gómez HF; Boston University, Boston, MA, USA.
  • Mittag F; European Bioinformatics Institute (EBI), Hinxton, UK, Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Matthes J; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Rudolph J; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany, Tel Aviv University, Tel Aviv, Israel.
  • Wrzodek F; European Bioinformatics Institute (EBI), Hinxton, UK, Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Netz E; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Diamantikos A; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Eichner J; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Keller R; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
  • Wrzodek C; Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany, Roche Pharmaceutical Research and Early Development, pRED Informatics, Roche Innovation Center, Penzberg, Germany.
  • Fröhlich S; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, Martin Luther University of Halle-Wittenberg, Halle (Saale), Germany and.
  • Lewis NE; University of California, San Diego, La Jolla, CA, USA, Novo Nordisk Foundation Center for Biosustainability, University of California, San Diego, La Jolla, CA, USA.
  • Myers CJ; The University of Utah, Salt Lake City, UT, USA.
  • Le Novère N; European Bioinformatics Institute (EBI), Hinxton, UK, Babraham Institute, Babraham Research Campus, Cambridge, UK.
  • Palsson BØ; University of California, San Diego, La Jolla, CA, USA, Novo Nordisk Foundation Center for Biosustainability, University of California, San Diego, La Jolla, CA, USA.
  • Hucka M; The California Institute of Technology, Pasadena, CA, USA.
  • Dräger A; University of California, San Diego, La Jolla, CA, USA, Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany.
Bioinformatics ; 31(20): 3383-6, 2015 Oct 15.
Article em En | MEDLINE | ID: mdl-26079347
ABSTRACT
UNLABELLED JSBML, the official pure Java programming library for the Systems Biology Markup Language (SBML) format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented via extensions of SBML. JSBML has matured into a major, active open-source project with contributions from a growing, international team of developers who not only maintain compatibility with SBML, but also drive steady improvements to the Java interface and promote ease-of-use with end users. AVAILABILITY AND IMPLEMENTATION Source code, binaries and documentation for JSBML can be freely obtained under the terms of the LGPL 2.1 from the website http//sbml.org/Software/JSBML. More information about JSBML can be found in the user guide at http//sbml.org/Software/JSBML/docs/. CONTACT jsbml-development@googlegroups.com or andraeger@eng.ucsd.edu SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biologia de Sistemas / Modelos Biológicos Idioma: En Ano de publicação: 2015 Tipo de documento: Article
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biologia de Sistemas / Modelos Biológicos Idioma: En Ano de publicação: 2015 Tipo de documento: Article