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Biology and genome of a newly discovered sibling species of Caenorhabditis elegans.
Kanzaki, Natsumi; Tsai, Isheng J; Tanaka, Ryusei; Hunt, Vicky L; Liu, Dang; Tsuyama, Kenji; Maeda, Yasunobu; Namai, Satoshi; Kumagai, Ryohei; Tracey, Alan; Holroyd, Nancy; Doyle, Stephen R; Woodruff, Gavin C; Murase, Kazunori; Kitazume, Hiromi; Chai, Cynthia; Akagi, Allison; Panda, Oishika; Ke, Huei-Mien; Schroeder, Frank C; Wang, John; Berriman, Matthew; Sternberg, Paul W; Sugimoto, Asako; Kikuchi, Taisei.
Afiliação
  • Kanzaki N; Forestry and Forest Products Research Institute, Tsukuba, 305-8687, Japan.
  • Tsai IJ; Kansai Research Center, Forestry and Forest Products Research Institute, 68 Nagaikyutaroh, Momoyama, Fushimi, Kyoto, 612-0855, Japan.
  • Tanaka R; Biodiversity Research Center, Academia Sinica, Taipei city, 11529, Taiwan.
  • Hunt VL; Faculty of Medicine, University of Miyazaki, Miyazaki, 889-1692, Japan.
  • Liu D; Faculty of Medicine, University of Miyazaki, Miyazaki, 889-1692, Japan.
  • Tsuyama K; Biodiversity Research Center, Academia Sinica, Taipei city, 11529, Taiwan.
  • Maeda Y; Laboratory of Developmental Dynamics, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan.
  • Namai S; Faculty of Medicine, University of Miyazaki, Miyazaki, 889-1692, Japan.
  • Kumagai R; Laboratory of Developmental Dynamics, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan.
  • Tracey A; Laboratory of Developmental Dynamics, Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan.
  • Holroyd N; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
  • Doyle SR; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
  • Woodruff GC; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
  • Murase K; Forestry and Forest Products Research Institute, Tsukuba, 305-8687, Japan.
  • Kitazume H; Department of Biology, Institute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403-5289, USA.
  • Chai C; Faculty of Medicine, University of Miyazaki, Miyazaki, 889-1692, Japan.
  • Akagi A; Faculty of Medicine, University of Miyazaki, Miyazaki, 889-1692, Japan.
  • Panda O; HHMI and Division of Biology and Biological Engineering, Caltech, Pasadena, CA, 91125, USA.
  • Ke HM; HHMI and Division of Biology and Biological Engineering, Caltech, Pasadena, CA, 91125, USA.
  • Schroeder FC; Boyce Thompson Institute, and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
  • Wang J; Biodiversity Research Center, Academia Sinica, Taipei city, 11529, Taiwan.
  • Berriman M; Boyce Thompson Institute, and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
  • Sternberg PW; Biodiversity Research Center, Academia Sinica, Taipei city, 11529, Taiwan.
  • Sugimoto A; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
  • Kikuchi T; HHMI and Division of Biology and Biological Engineering, Caltech, Pasadena, CA, 91125, USA.
Nat Commun ; 9(1): 3216, 2018 08 10.
Article em En | MEDLINE | ID: mdl-30097582
A 'sibling' species of the model organism Caenorhabditis elegans has long been sought for use in comparative analyses that would enable deep evolutionary interpretations of biological phenomena. Here, we describe the first sibling species of C. elegans, C. inopinata n. sp., isolated from fig syconia in Okinawa, Japan. We investigate the morphology, developmental processes and behaviour of C. inopinata, which differ significantly from those of C. elegans. The 123-Mb C. inopinata genome was sequenced and assembled into six nuclear chromosomes, allowing delineation of Caenorhabditis genome evolution and revealing unique characteristics, such as highly expanded transposable elements that might have contributed to the genome evolution of C. inopinata. In addition, C. inopinata exhibits massive gene losses in chemoreceptor gene families, which could be correlated with its limited habitat area. We have developed genetic and molecular techniques for C. inopinata; thus C. inopinata provides an exciting new platform for comparative evolutionary studies.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma / Caenorhabditis elegans Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2018 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma / Caenorhabditis elegans Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2018 Tipo de documento: Article