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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper, Lisa; Campbell, Jacqueline; Cannon, Ethalinda K S; Jung, Sook; Poelchau, Monica; Walls, Ramona; Andorf, Carson; Arnaud, Elizabeth; Berardini, Tanya Z; Birkett, Clayton; Cannon, Steve; Carson, James; Condon, Bradford; Cooper, Laurel; Dunn, Nathan; Elsik, Christine G; Farmer, Andrew; Ficklin, Stephen P; Grant, David; Grau, Emily; Herndon, Nic; Hu, Zhi-Liang; Humann, Jodi; Jaiswal, Pankaj; Jonquet, Clement; Laporte, Marie-Angélique; Larmande, Pierre; Lazo, Gerard; McCarthy, Fiona; Menda, Naama; Mungall, Christopher J; Munoz-Torres, Monica C; Naithani, Sushma; Nelson, Rex; Nesdill, Daureen; Park, Carissa; Reecy, James; Reiser, Leonore; Sanderson, Lacey-Anne; Sen, Taner Z; Staton, Margaret; Subramaniam, Sabarinath; Tello-Ruiz, Marcela Karey; Unda, Victor; Unni, Deepak; Wang, Liya; Ware, Doreen; Wegrzyn, Jill; Williams, Jason; Woodhouse, Margaret.
Afiliação
  • Harper L; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Campbell J; Computer Science, Iowa State University, Ames, IA, USA.
  • Cannon EKS; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Jung S; Computer Science, Iowa State University, Ames, IA, USA.
  • Poelchau M; Horticulture, Washington State University, Pullman, WA, USA.
  • Walls R; National Agricultural Library, USDA Agricultural Research Service, Beltsville, MD, USA.
  • Andorf C; Cyverse, University of Arizona, Tucson, AZ, USA.
  • Arnaud E; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Berardini TZ; Computer Science, Iowa State University, Ames, IA, USA.
  • Birkett C; Bioversity International, Informatics Unit, Conservation and Availability Programme, Parc Scientifique Agropolis II, Montpellier, France.
  • Cannon S; The Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
  • Carson J; USDA, Plant, Soil and Nutrition Research, Ithaca, NY, USA.
  • Condon B; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Cooper L; Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA.
  • Dunn N; Entomology and Plant Pathology, University of Tennessee Knoxville, Knoxville, TN, USA.
  • Elsik CG; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
  • Farmer A; Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Ficklin SP; Division of Animal Sciences and Division of Plant Sciences, University of Missouri, Columbia, MO, USA.
  • Grant D; National Center for Genome Resources, Santa Fe, NM, USA.
  • Grau E; Horticulture, Washington State University, Pullman, WA, USA.
  • Herndon N; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Hu ZL; National Center for Genome Resources, Santa Fe, NM, USA.
  • Humann J; Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
  • Jaiswal P; Animal Science, Iowa State University, Ames, USA.
  • Jonquet C; Horticulture, Washington State University, Pullman, WA, USA.
  • Laporte MA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
  • Larmande P; Laboratory of Informatics, Robotics, Microelectronics of Montpellier, University of Montpellier & CNRS, Montpellier, France.
  • Lazo G; Bioversity International, Informatics Unit, Conservation and Availability Programme, Parc Scientifique Agropolis II, Montpellier, France.
  • McCarthy F; DIADE, University of Montpellier, IRD, Montpellier, France.
  • Menda N; Crop Improvement and Genetics Research Unit, USDA-ARS, Albany, CA, USA.
  • Mungall CJ; School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ, USA.
  • Munoz-Torres MC; Boyce Thompson Institute, Ithaca, NY, USA.
  • Naithani S; Genomics Division, Lawrence Berkeley National Laboratories, Berkeley, CA, USA.
  • Nelson R; Genomics Division, Lawrence Berkeley National Laboratories, Berkeley, CA, USA.
  • Nesdill D; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
  • Park C; Corn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
  • Reecy J; Marriott Library, University of Utah, Salt Lake City, UT, USA.
  • Reiser L; Animal Science, Iowa State University, Ames, USA.
  • Sanderson LA; Animal Science, Iowa State University, Ames, USA.
  • Sen TZ; The Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
  • Staton M; Department of Plant Sciences, University of Saskatchewan, Saskatoon, Canada.
  • Subramaniam S; Crop Improvement and Genetics Research Unit, USDA-ARS, Albany, CA, USA.
  • Tello-Ruiz MK; Entomology and Plant Pathology, University of Tennessee Knoxville, Knoxville, TN, USA.
  • Unda V; The Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
  • Unni D; Plant Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
  • Wang L; Horticulture, Washington State University, Pullman, WA, USA.
  • Ware D; Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Wegrzyn J; Plant Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
  • Williams J; USDA, Plant, Soil and Nutrition Research, Ithaca, NY, USA.
  • Woodhouse M; Plant Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Database (Oxford) ; 20182018 01 01.
Article em En | MEDLINE | ID: mdl-30239679
ABSTRACT
The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require data management plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses. AgBioData (https//www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development, curation and management, with the goal of creating database products that are more Findable, Accessible, Interoperable and Reusable. We strive to promote authentic, detailed, accurate and explicit communication between all parties involved in scientific data. As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability with regard to data curation. Each section describes challenges and opportunities for these topics, along with recommendations and best practices.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genômica / Bases de Dados Genéticas / Agricultura Tipo de estudo: Guideline Idioma: En Ano de publicação: 2018 Tipo de documento: Article
Texto completo
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genômica / Bases de Dados Genéticas / Agricultura Tipo de estudo: Guideline Idioma: En Ano de publicação: 2018 Tipo de documento: Article