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GeneLab: Omics database for spaceflight experiments.
Ray, Shayoni; Gebre, Samrawit; Fogle, Homer; Berrios, Daniel C; Tran, Peter B; Galazka, Jonathan M; Costes, Sylvain V.
Afiliação
  • Ray S; Space Biosciences Division, USRA/NASA Ames Research Center, Moffett Field, CA, USA.
  • Gebre S; Space Biosciences Division, KBRwyle/NASA Ames Research Center, Moffett Field, CA, USA.
  • Fogle H; Space Biosciences Division, KBRwyle/NASA Ames Research Center, Moffett Field, CA, USA.
  • Berrios DC; Space Biosciences Division, USRA/NASA Ames Research Center, Moffett Field, CA, USA.
  • Tran PB; Intelligent Systems Division, NASA Ames Research Center, Moffett Field, CA, USA.
  • Galazka JM; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, USA.
  • Costes SV; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, USA.
Bioinformatics ; 35(10): 1753-1759, 2019 05 15.
Article em En | MEDLINE | ID: mdl-30329036
MOTIVATION: To curate and organize expensive spaceflight experiments conducted aboard space stations and maximize the scientific return of investment, while democratizing access to vast amounts of spaceflight related omics data generated from several model organisms. RESULTS: The GeneLab Data System (GLDS) is an open access database containing fully coordinated and curated 'omics' (genomics, transcriptomics, proteomics, metabolomics) data, detailed metadata and radiation dosimetry for a variety of model organisms. GLDS is supported by an integrated data system allowing federated search across several public bioinformatics repositories. Archived datasets can be queried using full-text search (e.g. keywords, Boolean and wildcards) and results can be sorted in multifactorial manner using assistive filters. GLDS also provides a collaborative platform built on GenomeSpace for sharing files and analyses with collaborators. It currently houses 172 datasets and supports standard guidelines for submission of datasets, MIAME (for microarray), ENCODE Consortium Guidelines (for RNA-seq) and MIAPE Guidelines (for proteomics). AVAILABILITY AND IMPLEMENTATION: https://genelab.nasa.gov/.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Voo Espacial Idioma: En Ano de publicação: 2019 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Voo Espacial Idioma: En Ano de publicação: 2019 Tipo de documento: Article