SPIM workflow manager for HPC.
Bioinformatics
; 35(19): 3875-3876, 2019 10 01.
Article
em En
| MEDLINE
| ID: mdl-30799494
ABSTRACT
SUMMARY:
Here we introduce a Fiji plugin utilizing the HPC-as-a-Service concept, significantly mitigating the challenges life scientists face when delegating complex data-intensive processing workflows to HPC clusters. We demonstrate on a common Selective Plane Illumination Microscopy image processing task that execution of a Fiji workflow on a remote supercomputer leads to improved turnaround time despite the data transfer overhead. The plugin allows the end users to conveniently transfer image data to remote HPC resources, manage pipeline jobs and visualize processed results directly from the Fiji graphical user interface. AVAILABILITY AND IMPLEMENTATION The code is distributed free and open source under the MIT license. Source code https//github.com/fiji-hpc/hpc-workflow-manager/, documentation https//imagej.net/SPIM_Workflow_Manager_For_HPC. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Software
/
Fluxo de Trabalho
Idioma:
En
Ano de publicação:
2019
Tipo de documento:
Article