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Amid, Clara; Pakseresht, Nima; Silvester, Nicole; Jayathilaka, Suran; Lund, Ole; Dynovski, Lukasz D; Pataki, Bálint Á; Visontai, Dávid; Xavier, Basil Britto; Alako, Blaise T F; Belka, Ariane; Cisneros, Jose L B; Cotten, Matthew; Haringhuizen, George B; Harrison, Peter W; Höper, Dirk; Holt, Sam; Hundahl, Camilla; Hussein, Abdulrahman; Kaas, Rolf S; Liu, Xin; Leinonen, Rasko; Malhotra-Kumar, Surbhi; Nieuwenhuijse, David F; Rahman, Nadim; Dos S Ribeiro, Carolina; Skiby, Jeffrey E; Schmitz, Dennis; Stéger, József; Szalai-Gindl, János M; Thomsen, Martin C F; Cacciò, Simone M; Csabai, István; Kroneman, Annelies; Koopmans, Marion; Aarestrup, Frank; Cochrane, Guy.
Afiliação
  • Amid C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Pakseresht N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Silvester N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Jayathilaka S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Lund O; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Dynovski LD; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Pataki BÁ; Department of Physics of Complex Systems, ELTE Eötvös Loránd University, Budapest 1117, Hungary.
  • Visontai D; Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary.
  • Xavier BB; Department of Physics of Complex Systems, ELTE Eötvös Loránd University, Budapest 1117, Hungary.
  • Alako BTF; Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary.
  • Belka A; Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Wilrijk 2610, Belgium.
  • Cisneros JLB; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Cotten M; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald 17493, Germany.
  • Haringhuizen GB; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Harrison PW; Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands.
  • Höper D; National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands.
  • Holt S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Hundahl C; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald 17493, Germany.
  • Hussein A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Kaas RS; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Liu X; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Leinonen R; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Malhotra-Kumar S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Nieuwenhuijse DF; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Rahman N; Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Wilrijk 2610, Belgium.
  • Dos S Ribeiro C; Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands.
  • Skiby JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Schmitz D; National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands.
  • Stéger J; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Szalai-Gindl JM; Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands.
  • Thomsen MCF; National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands.
  • Cacciò SM; Department of Physics of Complex Systems, ELTE Eötvös Loránd University, Budapest 1117, Hungary.
  • Csabai I; Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary.
  • Kroneman A; Department of Physics of Complex Systems, ELTE Eötvös Loránd University, Budapest 1117, Hungary.
  • Koopmans M; Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary.
  • Aarestrup F; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
  • Cochrane G; European Union Reference Laboratory for Parasites, Istituto Superiore di Sanità (ISS), Rome 00161, Italy.
Database (Oxford) ; 20192019 01 01.
Article em En | MEDLINE | ID: mdl-31868882
ABSTRACT
Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, regulatory and institutional challenges, as well as lack of suitable platforms which provide an infrastructure for data sharing in structured formats, often lead to data not being shared or at most shared in form of supplementary materials in journal publications. Here, we describe an informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Disseminação de Informação Idioma: En Ano de publicação: 2019 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Disseminação de Informação Idioma: En Ano de publicação: 2019 Tipo de documento: Article