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BioHackathon 2015: Semantics of data for life sciences and reproducible research.
Vos, Rutger A; Katayama, Toshiaki; Mishima, Hiroyuki; Kawano, Shin; Kawashima, Shuichi; Kim, Jin-Dong; Moriya, Yuki; Tokimatsu, Toshiaki; Yamaguchi, Atsuko; Yamamoto, Yasunori; Wu, Hongyan; Amstutz, Peter; Antezana, Erick; Aoki, Nobuyuki P; Arakawa, Kazuharu; Bolleman, Jerven T; Bolton, Evan; Bonnal, Raoul J P; Bono, Hidemasa; Burger, Kees; Chiba, Hirokazu; Cohen, Kevin B; Deutsch, Eric W; Fernández-Breis, Jesualdo T; Fu, Gang; Fujisawa, Takatomo; Fukushima, Atsushi; García, Alexander; Goto, Naohisa; Groza, Tudor; Hercus, Colin; Hoehndorf, Robert; Itaya, Kotone; Juty, Nick; Kawashima, Takeshi; Kim, Jee-Hyub; Kinjo, Akira R; Kotera, Masaaki; Kozaki, Kouji; Kumagai, Sadahiro; Kushida, Tatsuya; Lütteke, Thomas; Matsubara, Masaaki; Miyamoto, Joe; Mohsen, Attayeb; Mori, Hiroshi; Naito, Yuki; Nakazato, Takeru; Nguyen-Xuan, Jeremy; Nishida, Kozo.
Afiliação
  • Vos RA; Institute of Biology Leiden, Leiden University, Leiden, The Netherlands.
  • Katayama T; Naturalis Biodiversity Center, Leiden, The Netherlands.
  • Mishima H; Database Center for Life Science, Tokyo, Japan.
  • Kawano S; Department of Human Genetics, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
  • Kawashima S; Database Center for Life Science, Tokyo, Japan.
  • Kim JD; Database Center for Life Science, Tokyo, Japan.
  • Moriya Y; Database Center for Life Science, Tokyo, Japan.
  • Tokimatsu T; Database Center for Life Science, Tokyo, Japan.
  • Yamaguchi A; DDBJ Center, National Institute of Genetics, Mishima, Japan.
  • Yamamoto Y; Database Center for Life Science, Tokyo, Japan.
  • Wu H; Database Center for Life Science, Tokyo, Japan.
  • Amstutz P; Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
  • Antezana E; Curoverse, Somerville, USA.
  • Aoki NP; Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway.
  • Arakawa K; Faculty of Science and Engineering, SOKA University, Tokyo, Japan.
  • Bolleman JT; Institute for Advanced Biosciences, Keio University, Tokyo, Japan.
  • Bolton E; SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, Lausanne, Switzerland.
  • Bonnal RJP; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, USA.
  • Bono H; Istituto Nazionale Genetica Molecolare, Romeo ed Enrica Invernizzi, Milan, Italy.
  • Burger K; Database Center for Life Science, Tokyo, Japan.
  • Chiba H; Dutch Techcentre for Life Sciences, Utrecht, The Netherlands.
  • Cohen KB; National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Japan.
  • Deutsch EW; Computational Bioscience Program, University of Colorado School of Medicine, Denver, USA.
  • Fernández-Breis JT; Université Paris-Saclay, LIMSI, CNRS, Paris, France.
  • Fu G; Institute for Systems Biology, Seattle, USA.
  • Fujisawa T; Universidad de Murcia, IMIB-Arrixaca, Murcia, Spain.
  • Fukushima A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, USA.
  • García A; National Institute of Genetics, Mishima, Japan.
  • Goto N; RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
  • Groza T; Polytechnic University of Madrid, Madrid, Spain.
  • Hercus C; Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
  • Hoehndorf R; St Vincent's Clinical School, Faculty of Medicine, University of New South Wales, Darlinghurst, Australia.
  • Itaya K; Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Australia.
  • Juty N; Novocraft Technologies Sdn. Bhd., Selangor, Malaysia.
  • Kawashima T; Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
  • Kim JH; Institute for Advanced Biosciences, Keio University, Tokyo, Japan.
  • Kinjo AR; European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
  • Kotera M; National Institute of Genetics, Mishima, Japan.
  • Kozaki K; European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
  • Kumagai S; Institute for Protein Research, Osaka University, Osaka, Japan.
  • Kushida T; School of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan.
  • Lütteke T; The Institute of Scientific and Industrial Research, Osaka University, Osaka, Japan.
  • Matsubara M; Hitachi Ltd., Tokyo, Japan.
  • Miyamoto J; National Bioscience Database Center, Japan Science and Technology Agency, Tokyo, Japan.
  • Mohsen A; Institute of Veterinary Physiology and Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.
  • Mori H; Gesellschaft für innovative Personalwirtschaftssysteme mbH (GIP GmbH), Offenbach, Germany.
  • Naito Y; The Noguchi Institute, Tokyo, Japan.
  • Nakazato T; National Cancer Center Japan, Tokyo, Japan.
  • Nguyen-Xuan J; National Institutes of Biomedical Innovation, Health and Nutrition, Osaka, Japan.
  • Nishida K; Center for Information Biology, National Institute of Genetics, Mishima, Japan.
F1000Res ; 9: 136, 2020.
Article em En | MEDLINE | ID: mdl-32308977
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas / Biologia Computacional / Web Semântica Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2020 Tipo de documento: Article
Texto completo
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XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas / Biologia Computacional / Web Semântica Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2020 Tipo de documento: Article