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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
Waltemath, Dagmar; Golebiewski, Martin; Blinov, Michael L; Gleeson, Padraig; Hermjakob, Henning; Hucka, Michael; Inau, Esther Thea; Keating, Sarah M; König, Matthias; Krebs, Olga; Malik-Sheriff, Rahuman S; Nickerson, David; Oberortner, Ernst; Sauro, Herbert M; Schreiber, Falk; Smith, Lucian; Stefan, Melanie I; Wittig, Ulrike; Myers, Chris J.
Afiliação
  • Waltemath D; Medical Informatics, University Medicine Greifswald, Greifswald, Germany.
  • Golebiewski M; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany.
  • Blinov ML; UConn Health, Farmington, CT, USA.
  • Gleeson P; Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
  • Hermjakob H; EMBL-EBI, Cambridge, UK.
  • Hucka M; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.
  • Inau ET; Medical Informatics, University Medicine Greifswald, Greifswald, Germany.
  • Keating SM; University College London, London, UK.
  • König M; Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany.
  • Krebs O; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany.
  • Malik-Sheriff RS; EMBL-EBI, Cambridge, UK.
  • Nickerson D; Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.
  • Oberortner E; U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Lawrence Berkeley National Labs, Berkeley, CA, USA.
  • Sauro HM; Department of Bioengineering, University of Washington, Seattle, WA, USA.
  • Schreiber F; Department of Computer and Information Science, University ofKonstanz, Germany.
  • Smith L; Faculty of IT, Monash University, Melbourne, VIC, Australia.
  • Stefan MI; Department of Bioengineering, University of Washington, Seattle, WA, USA.
  • Wittig U; Centre for Discovery Brain Sciences, The University of Edinburgh, Edinburgh, UK.
  • Myers CJ; ZJU-UoE Institute, Zhejiang University, Haining, China.
J Integr Bioinform ; 17(2-3)2020 Jun 29.
Article em En | MEDLINE | ID: mdl-32598315
This paper presents a report on outcomes of the 10th Computational Modeling in Biology Network (COMBINE) meeting that was held in Heidelberg, Germany, in July of 2019. The annual event brings together researchers, biocurators and software engineers to present recent results and discuss future work in the area of standards for systems and synthetic biology. The COMBINE initiative coordinates the development of various community standards and formats for computational models in the life sciences. Over the past 10 years, COMBINE has brought together standard communities that have further developed and harmonized their standards for better interoperability of models and data. COMBINE 2019 was co-located with a stakeholder workshop of the European EU-STANDS4PM initiative that aims at harmonized data and model standardization for in silico models in the field of personalized medicine, as well as with the FAIRDOM PALs meeting to discuss findable, accessible, interoperable and reusable (FAIR) data sharing. This report briefly describes the work discussed in invited and contributed talks as well as during breakout sessions. It also highlights recent advancements in data, model, and annotation standardization efforts. Finally, this report concludes with some challenges and opportunities that this community will face during the next 10 years.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Biologia Computacional / Biologia Sintética País/Região como assunto: Europa Idioma: En Ano de publicação: 2020 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Biologia Computacional / Biologia Sintética País/Região como assunto: Europa Idioma: En Ano de publicação: 2020 Tipo de documento: Article