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Flexibilities of wavelets as a computational basis set for large-scale electronic structure calculations.
Ratcliff, Laura E; Dawson, William; Fisicaro, Giuseppe; Caliste, Damien; Mohr, Stephan; Degomme, Augustin; Videau, Brice; Cristiglio, Viviana; Stella, Martina; D'Alessandro, Marco; Goedecker, Stefan; Nakajima, Takahito; Deutsch, Thierry; Genovese, Luigi.
Afiliação
  • Ratcliff LE; Department of Materials, Imperial College London, London SW7 2AZ, United Kingdom.
  • Dawson W; RIKEN Center for Computational Science, Kobe, Japan.
  • Fisicaro G; Consiglio Nazionale delle Ricerche, Istituto per la Microelettronica e Microsistemi (CNR-IMM), Z.I. VIII Strada 5, I-95121 Catania, Italy.
  • Caliste D; Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.
  • Mohr S; Barcelona Supercomputing Center (BSC), Barcelona, Spain.
  • Degomme A; Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.
  • Videau B; Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.
  • Cristiglio V; Institut Laue Langevin, 38042 Grenoble, France.
  • Stella M; Department of Materials, Imperial College London, London SW7 2AZ, United Kingdom.
  • D'Alessandro M; Istituto di Struttura della Materia-CNR (ISM-CNR), Via del Fosso del Cavaliere 100, 00133 Roma, Italy.
  • Goedecker S; Department of Physics, University of Basel, Basel, Switzerland.
  • Nakajima T; RIKEN Center for Computational Science, Kobe, Japan.
  • Deutsch T; Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.
  • Genovese L; Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.
J Chem Phys ; 152(19): 194110, 2020 May 21.
Article em En | MEDLINE | ID: mdl-33687268
ABSTRACT
The BigDFT project was started in 2005 with the aim of testing the advantages of using a Daubechies wavelet basis set for Kohn-Sham (KS) density functional theory (DFT) with pseudopotentials. This project led to the creation of the BigDFT code, which employs a computational approach with optimal features of flexibility, performance, and precision of the results. In particular, the employed formalism has enabled the implementation of an algorithm able to tackle DFT calculations of large systems, up to many thousands of atoms, with a computational effort that scales linearly with the number of atoms. In this work, we recall some of the features that have been made possible by the peculiar properties of Daubechies wavelets. In particular, we focus our attention on the usage of DFT for large-scale systems. We show how the localized description of the KS problem, emerging from the features of the basis set, is helpful in providing a simplified description of large-scale electronic structure calculations. We provide some examples on how such a simplified description can be employed, and we consider, among the case-studies, the SARS-CoV-2 main protease.

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article