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A Computationally Lightweight Algorithm for Deriving Reliable Metabolite Panel Measurements from 1D 1H NMR.
Takis, Panteleimon G; Jiménez, Beatriz; Al-Saffar, Nada M S; Harvey, Nikita; Chekmeneva, Elena; Misra, Shivani; Lewis, Matthew R.
Afiliação
  • Takis PG; National Phenome Centre, Imperial College London, Hammer-smith Campus, IRDB Building, London W12 0NN, United Kingdom.
  • Jiménez B; Section of Bioanalytical Chemistry, Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
  • Al-Saffar NMS; National Phenome Centre, Imperial College London, Hammer-smith Campus, IRDB Building, London W12 0NN, United Kingdom.
  • Harvey N; Section of Bioanalytical Chemistry, Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
  • Chekmeneva E; National Phenome Centre, Imperial College London, Hammer-smith Campus, IRDB Building, London W12 0NN, United Kingdom.
  • Misra S; Section of Bioanalytical Chemistry, Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
  • Lewis MR; National Phenome Centre, Imperial College London, Hammer-smith Campus, IRDB Building, London W12 0NN, United Kingdom.
Anal Chem ; 93(12): 4995-5000, 2021 03 30.
Article em En | MEDLINE | ID: mdl-33733737
ABSTRACT
Small Molecule Enhancement SpectroscopY (SMolESY) was employed to develop a unique and fully automated computational solution for the assignment and integration of 1H nuclear magnetic resonance (NMR) signals from metabolites in challenging matrices containing macromolecules (herein blood products). Sensitive and reliable quantitation is provided by instant signal deconvolution and straightforward integration bolstered by spectral resolution enhancement and macromolecular signal suppression. The approach is highly efficient, requiring only standard one-dimensional 1H NMR spectra and avoiding the need for sample preprocessing, complex deconvolution, and spectral baseline fitting. The performance of the algorithm, developed using >4000 NMR serum and plasma spectra, was evaluated using an additional >8800 spectra, yielding an assignment accuracy greater than 99.5% for all 22 metabolites targeted. Further validation of its quantitation capabilities illustrated a reliable performance among challenging phenotypes. The simplicity and complete automation of the approach support the application of NMR-based metabolite panel measurements in clinical and population screening applications.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Imageamento por Ressonância Magnética Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Imageamento por Ressonância Magnética Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2021 Tipo de documento: Article