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Multilevel summation for periodic electrostatics using B-splines.
Kaya, Hüseyin; Hardy, David J; Skeel, Robert D.
Afiliação
  • Kaya H; Technology Management, Payten, Inc., ITU Advanced Research and Innovation Center, Istanbul 34396, Turkey.
  • Hardy DJ; Beckman Insitute, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
  • Skeel RD; School of Mathematical and Statistical Sciences, Arizona State University, Tempe, Arizona 85287, USA.
J Chem Phys ; 154(14): 144105, 2021 Apr 14.
Article em En | MEDLINE | ID: mdl-33858159
Fast methods for calculating two-body interactions have many applications, and for molecular science and cosmology, it is common to employ periodic boundary conditions. However, for the 1/r potential, the energy and forces are ill-defined. Adopted here is the model given by the classic Ewald sum. For the fast calculation of two-body forces, the most celebrated method is the fast multipole method and its tree-code predecessor. However, molecular simulations typically employ mesh-based approximations and the fast Fourier transform. Both types of methods have significant drawbacks, which, in most respects, are overcome by the less well-known multilevel summation method (MSM). Presented here is a realization of the MSM, which can be regarded as a multilevel extension of the (smoothed) particle mesh Ewald (PME) method, but with the Ewald softening replaced by one having a finite range. The two-level (single-grid) version of MSM requires fewer tuning parameters than PME and is marginally faster. Additionally, higher-level versions of MSM scale well to large numbers of processors, whereas PME and other two-level methods do not. Although higher-level versions of MSM are less efficient on a single processor than the two-level version, evidence suggests that they are more efficient than other methods that scale well, such as the fast multipole method and tree codes.

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Ano de publicação: 2021 Tipo de documento: Article