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Universal Spectrum Identifier for mass spectra.
Deutsch, Eric W; Perez-Riverol, Yasset; Carver, Jeremy; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Binz, Pierre-Alain; Pullman, Benjamin; Sun, Zhi; Shofstahl, Jim; Bittremieux, Wout; Mak, Tytus D; Klein, Joshua; Zhu, Yunping; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, Nuno.
Afiliação
  • Deutsch EW; Institute for Systems Biology, Seattle, WA, USA. edeutsch@systemsbiology.org.
  • Perez-Riverol Y; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK.
  • Carver J; Center for Computational Mass Spectrometry, Department of Computer Science and Engineering, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.
  • Kawano S; Toyama University of International Studies, Toyama, Japan.
  • Mendoza L; Institute for Systems Biology, Seattle, WA, USA.
  • Van Den Bossche T; VIB-UGent Center for Medical Biotechnology, Ghent, Belgium.
  • Gabriels R; Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium.
  • Binz PA; VIB-UGent Center for Medical Biotechnology, Ghent, Belgium.
  • Pullman B; Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium.
  • Sun Z; Clinical Chemistry Service, Lausanne University Hospital, Lausanne, Switzerland.
  • Shofstahl J; Center for Computational Mass Spectrometry, Department of Computer Science and Engineering, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.
  • Bittremieux W; Institute for Systems Biology, Seattle, WA, USA.
  • Mak TD; Thermo Fisher Scientific, San Jose, CA, USA.
  • Klein J; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
  • Zhu Y; Department of Computer Science, University of Antwerp, Antwerp, Belgium.
  • Lam H; Mass Spectrometry Data Center, National Institute of Standards and Technology, Gaithersburg, MD, USA.
  • Vizcaíno JA; Program for Bioinformatics, Boston University, Boston, MA, USA.
  • Bandeira N; National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Changping District, Beijing, China.
Nat Methods ; 18(7): 768-770, 2021 07.
Article em En | MEDLINE | ID: mdl-34183830
ABSTRACT
Mass spectra provide the ultimate evidence to support the findings of mass spectrometry proteomics studies in publications, and it is therefore crucial to be able to trace the conclusions back to the spectra. The Universal Spectrum Identifier (USI) provides a standardized mechanism for encoding a virtual path to any mass spectrum contained in datasets deposited to public proteomics repositories. USI enables greater transparency of spectral evidence, with more than 1 billion USI identifications from over 3 billion spectra already available through ProteomeXchange repositories.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Espectrometria de Massas / Processamento de Sinais Assistido por Computador / Software / Bases de Dados de Proteínas / Proteômica Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2021 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Espectrometria de Massas / Processamento de Sinais Assistido por Computador / Software / Bases de Dados de Proteínas / Proteômica Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2021 Tipo de documento: Article