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Ancient and modern genomes unravel the evolutionary history of the rhinoceros family.
Liu, Shanlin; Westbury, Michael V; Dussex, Nicolas; Mitchell, Kieren J; Sinding, Mikkel-Holger S; Heintzman, Peter D; Duchêne, David A; Kapp, Joshua D; von Seth, Johanna; Heiniger, Holly; Sánchez-Barreiro, Fátima; Margaryan, Ashot; André-Olsen, Remi; De Cahsan, Binia; Meng, Guanliang; Yang, Chentao; Chen, Lei; van der Valk, Tom; Moodley, Yoshan; Rookmaaker, Kees; Bruford, Michael W; Ryder, Oliver; Steiner, Cynthia; Bruins-van Sonsbeek, Linda G R; Vartanyan, Sergey; Guo, Chunxue; Cooper, Alan; Kosintsev, Pavel; Kirillova, Irina; Lister, Adrian M; Marques-Bonet, Tomas; Gopalakrishnan, Shyam; Dunn, Robert R; Lorenzen, Eline D; Shapiro, Beth; Zhang, Guojie; Antoine, Pierre-Olivier; Dalén, Love; Gilbert, M Thomas P.
Afiliação
  • Liu S; Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, China; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark. Electronic address: shanlin.liu@cau.edu.cn.
  • Westbury MV; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Dussex N; Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm 10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm 10405, Sweden; Department of Zoology, Stockholm University, Stockholm 10691, Sweden.
  • Mitchell KJ; Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide 5005, Australia.
  • Sinding MS; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Heintzman PD; The Arctic University Museum of Norway, UiT The Arctic University of Norway, Tromsø 9037, Norway.
  • Duchêne DA; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Kapp JD; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
  • von Seth J; Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm 10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm 10405, Sweden; Department of Zoology, Stockholm University, Stockholm 10691, Sweden.
  • Heiniger H; Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide 5005, Australia.
  • Sánchez-Barreiro F; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Margaryan A; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • André-Olsen R; Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17121 Solna, Sweden.
  • De Cahsan B; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Meng G; China National Genebank, BGI Shenzhen, Shenzhen 518083, China.
  • Yang C; China National Genebank, BGI Shenzhen, Shenzhen 518083, China.
  • Chen L; Center for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an 710072, China.
  • van der Valk T; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
  • Moodley Y; Department of Zoology, University of Venda, Thohoyandou 0950, Republic of South Africa.
  • Rookmaaker K; Editor of the Rhino Resource Center, Utrecht, the Netherlands.
  • Bruford MW; School of Biosciences, Sir Martin Evans Building, Cardiff University, Cardiff CF10 3AX, UK; Sustainable Places Research Institute, Cardiff University, Cardiff CF10 3BA, UK.
  • Ryder O; San Diego Zoo Wildlife Alliance, Beckman Center for Conservation Research, San Diego, CA 92027, USA.
  • Steiner C; San Diego Zoo Wildlife Alliance, Beckman Center for Conservation Research, San Diego, CA 92027, USA.
  • Bruins-van Sonsbeek LGR; Rotterdam Zoo, Rotterdam, the Netherlands.
  • Vartanyan S; N.A. Shilo North-East Interdisciplinary Scientific Research Institute, Far East Branch, Russian Academy of Sciences (NEISRI FEB RAS), Magadan 685000, Russia.
  • Guo C; China National Genebank, BGI Shenzhen, Shenzhen 518083, China.
  • Cooper A; South Australian Museum, Adelaide, SA 5000, Australia.
  • Kosintsev P; Institute of Plant and Animal Ecology, Ural Branch of the Russian Academy of Sciences, Yekaterinburg, Russia; Ural Federal University, Yekaterinburg, Russia.
  • Kirillova I; Institute of Geography, Russian Academy of Sciences, Moscow 119017, Russia.
  • Lister AM; Department of Earth Sciences, Natural History Museum, London, UK.
  • Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), Barcelona, Spain; Centre Nacional d'Anàlisi Genòmica, Centre for Genomic Regulation (CNAG-CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain; Institut Cat
  • Gopalakrishnan S; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Dunn RR; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark; Department of Applied Ecology, North Carolina State University, Raleigh, NC, USA.
  • Lorenzen ED; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark.
  • Shapiro B; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 96050, USA.
  • Zhang G; China National Genebank, BGI Shenzhen, Shenzhen 518083, China; Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chin
  • Antoine PO; Institut des Sciences de l'Évolution, Université Montpellier, CNRS, IRD, EPHE, Montpellier 34095, France.
  • Dalén L; Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm 10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm 10405, Sweden; Department of Zoology, Stockholm University, Stockholm 10691, Sweden. Electronic address: love.dalen@nrm.se.
  • Gilbert MTP; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, 1353 Copenhagen, Denmark; Norwegian University of Science and Technology (NTNU) University Museum, Trondheim 7012, Norway. Electronic address: tgilbert@sund.ku.dk.
Cell ; 184(19): 4874-4885.e16, 2021 09 16.
Article em En | MEDLINE | ID: mdl-34433011
ABSTRACT
Only five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct and two living), which we compared to existing data from the remaining three living species and a range of outgroups. We identify an early divergence between extant African and Eurasian lineages, resolving a key debate regarding the phylogeny of extant rhinoceroses. This early Miocene (∼16 million years ago [mya]) split post-dates the land bridge formation between the Afro-Arabian and Eurasian landmasses. Our analyses also show that while rhinoceros genomes in general exhibit low levels of genome-wide diversity, heterozygosity is lowest and inbreeding is highest in the modern species. These results suggest that while low genetic diversity is a long-term feature of the family, it has been particularly exacerbated recently, likely reflecting recent anthropogenic-driven population declines.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perissodáctilos / Genoma / Evolução Molecular Tipo de estudo: Health_economic_evaluation / Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2021 Tipo de documento: Article
Texto completo
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perissodáctilos / Genoma / Evolução Molecular Tipo de estudo: Health_economic_evaluation / Prognostic_studies Limite: Animals Idioma: En Ano de publicação: 2021 Tipo de documento: Article