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Swarm learning for decentralized artificial intelligence in cancer histopathology.
Saldanha, Oliver Lester; Quirke, Philip; West, Nicholas P; James, Jacqueline A; Loughrey, Maurice B; Grabsch, Heike I; Salto-Tellez, Manuel; Alwers, Elizabeth; Cifci, Didem; Ghaffari Laleh, Narmin; Seibel, Tobias; Gray, Richard; Hutchins, Gordon G A; Brenner, Hermann; van Treeck, Marko; Yuan, Tanwei; Brinker, Titus J; Chang-Claude, Jenny; Khader, Firas; Schuppert, Andreas; Luedde, Tom; Trautwein, Christian; Muti, Hannah Sophie; Foersch, Sebastian; Hoffmeister, Michael; Truhn, Daniel; Kather, Jakob Nikolas.
Afiliação
  • Saldanha OL; Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany.
  • Quirke P; Pathology & Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
  • West NP; Pathology & Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
  • James JA; Precision Medicine Centre of Excellence, Health Sciences Building, The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
  • Loughrey MB; Regional Molecular Diagnostic Service, Belfast Health and Social Care Trust, Belfast, UK.
  • Grabsch HI; The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
  • Salto-Tellez M; The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
  • Alwers E; Department of Cellular Pathology, Belfast Health and Social Care Trust, Belfast, UK.
  • Cifci D; Centre for Public Health, Queen's University Belfast, Belfast, UK.
  • Ghaffari Laleh N; Pathology & Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
  • Seibel T; Department of Pathology and GROW School for Oncology and Reproduction, Maastricht University Medical Center+, Maastricht, the Netherlands.
  • Gray R; Precision Medicine Centre of Excellence, Health Sciences Building, The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
  • Hutchins GGA; Regional Molecular Diagnostic Service, Belfast Health and Social Care Trust, Belfast, UK.
  • Brenner H; The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
  • van Treeck M; Division of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Yuan T; Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany.
  • Brinker TJ; Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany.
  • Chang-Claude J; Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany.
  • Khader F; Clinical Trial Service Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK.
  • Schuppert A; Pathology & Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
  • Luedde T; Division of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Trautwein C; Division of Preventive Oncology, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany.
  • Muti HS; German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Foersch S; Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany.
  • Hoffmeister M; Division of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Truhn D; Digital Biomarkers for Oncology Group (DBO), National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Kather JN; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Nat Med ; 28(6): 1232-1239, 2022 06.
Article em En | MEDLINE | ID: mdl-35469069
Artificial intelligence (AI) can predict the presence of molecular alterations directly from routine histopathology slides. However, training robust AI systems requires large datasets for which data collection faces practical, ethical and legal obstacles. These obstacles could be overcome with swarm learning (SL), in which partners jointly train AI models while avoiding data transfer and monopolistic data governance. Here, we demonstrate the successful use of SL in large, multicentric datasets of gigapixel histopathology images from over 5,000 patients. We show that AI models trained using SL can predict BRAF mutational status and microsatellite instability directly from hematoxylin and eosin (H&E)-stained pathology slides of colorectal cancer. We trained AI models on three patient cohorts from Northern Ireland, Germany and the United States, and validated the prediction performance in two independent datasets from the United Kingdom. Our data show that SL-trained AI models outperform most locally trained models, and perform on par with models that are trained on the merged datasets. In addition, we show that SL-based AI models are data efficient. In the future, SL can be used to train distributed AI models for any histopathology image analysis task, eliminating the need for data transfer.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Inteligência Artificial / Neoplasias Tipo de estudo: Prognostic_studies Limite: Humans País/Região como assunto: Europa Idioma: En Ano de publicação: 2022 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Inteligência Artificial / Neoplasias Tipo de estudo: Prognostic_studies Limite: Humans País/Região como assunto: Europa Idioma: En Ano de publicação: 2022 Tipo de documento: Article