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Wheat Panache: A pangenome graph database representing presence-absence variation across sixteen bread wheat genomes.
Bayer, Philipp E; Petereit, Jakob; Durant, Éloi; Monat, Cécile; Rouard, Mathieu; Hu, Haifei; Chapman, Brett; Li, Chengdao; Cheng, Shifeng; Batley, Jacqueline; Edwards, David.
Afiliação
  • Bayer PE; School of Biological Sciences, The Univ. of Western Australia, Perth, 6009, Australia.
  • Petereit J; School of Biological Sciences, The Univ. of Western Australia, Perth, 6009, Australia.
  • Durant É; DIADE, Univ. of Montpellier, CIRAD, IRD, Montpellier, 34830, France.
  • Monat C; Syngenta Seeds S.A.S., 12 chemin de l'Hobit, Saint-Sauveur, 31790, France.
  • Rouard M; Bioversity International, Parc Scientifique Agropolis II, Montpellier, 34397, France.
  • Hu H; French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, 34398, France.
  • Chapman B; Syngenta Seeds S.A.S., 12 chemin de l'Hobit, Saint-Sauveur, 31790, France.
  • Li C; Bioversity International, Parc Scientifique Agropolis II, Montpellier, 34397, France.
  • Cheng S; French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, 34398, France.
  • Batley J; Western Crop Genetics Alliance, Murdoch Univ., 90 South Street, Murdoch, 6150, Australia.
  • Edwards D; Western Crop Genetics Alliance, Murdoch Univ., 90 South Street, Murdoch, 6150, Australia.
Plant Genome ; 15(3): e20221, 2022 09.
Article em En | MEDLINE | ID: mdl-35644986
RESUMEN
Graph pangenomes represent more genomic variants than reference genomes. We present a wheat graph pangenome based on 16 public assemblies. We present Wheat Panache, an online visual representation of this graph. Wheat Panache lets users search the graph for presence-absence variants. We also distribute the graph preindexed for Giraffe utilization.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Triticum / Pão Idioma: En Ano de publicação: 2022 Tipo de documento: Article
Texto completo
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XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Triticum / Pão Idioma: En Ano de publicação: 2022 Tipo de documento: Article