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RMG Database for Chemical Property Prediction.
Johnson, Matthew S; Dong, Xiaorui; Grinberg Dana, Alon; Chung, Yunsie; Farina, David; Gillis, Ryan J; Liu, Mengjie; Yee, Nathan W; Blondal, Katrin; Mazeau, Emily; Grambow, Colin A; Payne, A Mark; Spiekermann, Kevin A; Pang, Hao-Wei; Goldsmith, C Franklin; West, Richard H; Green, William H.
Afiliação
  • Johnson MS; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Dong X; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Grinberg Dana A; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Chung Y; The Wolfson Department of Chemical Engineering, Grand Technion Energy Program (GTEP), Technion─Israel Institute of Technology, Haifa3200003, Israel.
  • Farina D; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Gillis RJ; Department of Chemical Engineering, Northeastern University, Boston, Massachusetts02115, United States.
  • Liu M; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Yee NW; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Blondal K; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Mazeau E; School of Engineering, Brown University, Providence, Rhode Island02912, United States.
  • Grambow CA; Department of Chemical Engineering, Northeastern University, Boston, Massachusetts02115, United States.
  • Payne AM; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Spiekermann KA; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Pang HW; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • Goldsmith CF; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.
  • West RH; School of Engineering, Brown University, Providence, Rhode Island02912, United States.
  • Green WH; Department of Chemical Engineering, Northeastern University, Boston, Massachusetts02115, United States.
J Chem Inf Model ; 62(20): 4906-4915, 2022 10 24.
Article em En | MEDLINE | ID: mdl-36222558
The Reaction Mechanism Generator (RMG) database for chemical property prediction is presented. The RMG database consists of curated datasets and estimators for accurately predicting the parameters necessary for constructing a wide variety of chemical kinetic mechanisms. These datasets and estimators are mostly published and enable prediction of thermodynamics, kinetics, solvation effects, and transport properties. For thermochemistry prediction, the RMG database contains 45 libraries of thermochemical parameters with a combination of 4564 entries and a group additivity scheme with 9 types of corrections including radical, polycyclic, and surface absorption corrections with 1580 total curated groups and parameters for a graph convolutional neural network trained using transfer learning from a set of >130 000 DFT calculations to 10 000 high-quality values. Correction schemes for solvent-solute effects, important for thermochemistry in the liquid phase, are available. They include tabulated values for 195 pure solvents and 152 common solutes and a group additivity scheme for predicting the properties of arbitrary solutes. For kinetics estimation, the database contains 92 libraries of kinetic parameters containing a combined 21 000 reactions and contains rate rule schemes for 87 reaction classes trained on 8655 curated training reactions. Additional libraries and estimators are available for transport properties. All of this information is easily accessible through the graphical user interface at https://rmg.mit.edu. Bulk or on-the-fly use can be facilitated by interfacing directly with the RMG Python package which can be installed from Anaconda. The RMG database provides kineticists with easy access to estimates of the many parameters they need to model and analyze kinetic systems. This helps to speed up and facilitate kinetic analysis by enabling easy hypothesis testing on pathways, by providing parameters for model construction, and by providing checks on kinetic parameters from other sources.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Modelos Químicos Tipo de estudo: Prognostic_studies / Risk_factors_studies Idioma: En Ano de publicação: 2022 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Modelos Químicos Tipo de estudo: Prognostic_studies / Risk_factors_studies Idioma: En Ano de publicação: 2022 Tipo de documento: Article