SeqCP: A sequence-based algorithm for searching circularly permuted proteins.

Chen, Chi-Chun; Huang, Yu-Wei; Huang, Hsuan-Cheng; Lo, Wei-Cheng; Lyu, Ping-Chiang

Chen, Chi-Chun; Huang, Yu-Wei; Huang, Hsuan-Cheng; Lo, Wei-Cheng; Lyu, Ping-Chiang.

Afiliação

Chen CC; Bioinformatics Program, Institute of Information Science, Taiwan International Graduate Program, Academia Sinica, Taipei 115, Taiwan.
Huang YW; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 300, Taiwan.
Huang HC; Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University, Hsinchu 300, Taiwan.
Lo WC; Bioinformatics Program, Institute of Information Science, Taiwan International Graduate Program, Academia Sinica, Taipei 115, Taiwan.
Lyu PC; Institute of Biomedical Informatics, National Yang Ming Chiao Tung University, Taipei 112, Taiwan.

Comput Struct Biotechnol J ; 21: 185-201, 2023.

Article em En | MEDLINE | ID: mdl-36582435

Palavras-chave

AUC, area under the ROC curve; CE, combinatorial extension; CE-CP, CE with Circular Permutations; CP, circular permutation; CPDB, Circular Permutation Database; CPMs, circular permutants; CPSARST, Circular Permutation Search Aided by Ramachandran Sequential Transformation; Circular permutants; Circular permutation; MCC, Matthews correlation coefficient; Protein sequence analysis; Protein structure modeling; RMSD, root-mean-square distance; ROC, receiver operating characteristic

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2023 Tipo de documento: Article

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2023 Tipo de documento: Article