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Pharos 2023: an integrated resource for the understudied human proteome.
Kelleher, Keith J; Sheils, Timothy K; Mathias, Stephen L; Yang, Jeremy J; Metzger, Vincent T; Siramshetty, Vishal B; Nguyen, Dac-Trung; Jensen, Lars Juhl; Vidovic, Dusica; Schürer, Stephan C; Holmes, Jayme; Sharma, Karlie R; Pillai, Ajay; Bologa, Cristian G; Edwards, Jeremy S; Mathé, Ewy A; Oprea, Tudor I.
Afiliação
  • Kelleher KJ; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Sheils TK; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Mathias SL; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
  • Yang JJ; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
  • Metzger VT; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
  • Siramshetty VB; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Nguyen DT; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Jensen LJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen 2200, Copenhagen, Denmark.
  • Vidovic D; Institute for Data Science and Computing, University of Miami, Coral Gables, FL 33146, USA.
  • Schürer SC; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL 33136, USA.
  • Holmes J; Institute for Data Science and Computing, University of Miami, Coral Gables, FL 33146, USA.
  • Sharma KR; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL 33136, USA.
  • Pillai A; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136, USA.
  • Bologa CG; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
  • Edwards JS; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Mathé EA; National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Oprea TI; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
Nucleic Acids Res ; 51(D1): D1405-D1416, 2023 01 06.
Article em En | MEDLINE | ID: mdl-36624666
The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort are the Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/), which curates and aggregates information, and Pharos (https://pharos.nih.gov/), a web interface for fusers to extract and visualize data from TCRD. Since the 2021 release, TCRD/Pharos has focused on developing visualization and analysis tools that help reveal higher-level patterns in the underlying data. The current iterations of TCRD and Pharos enable users to perform enrichment calculations based on subsets of targets, diseases, or ligands and to create interactive heat maps and UpSet charts of many types of annotations. Using several examples, we show how to address disease biology and drug discovery questions through enrichment calculations and UpSet charts.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Proteoma / Terapia de Alvo Molecular Limite: Humans Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Proteoma / Terapia de Alvo Molecular Limite: Humans Idioma: En Ano de publicação: 2023 Tipo de documento: Article