Gilda: biomedical entity text normalization with machine-learned disambiguation as a service.
Bioinform Adv
; 2(1): vbac034, 2022.
Article
em En
| MEDLINE
| ID: mdl-36699362
ABSTRACT
Summary:
Gilda is a software tool and web service that implements a scored string matching algorithm for names and synonyms across entries in biomedical ontologies covering genes, proteins (and their families and complexes), small molecules, biological processes and diseases. Gilda integrates machine-learned disambiguation models to choose between ambiguous strings given relevant surrounding text as context, and supports species-prioritization in case of ambiguity. Availability and implementation The Gilda web service is available at http//grounding.indra.bio with source code, documentation and tutorials available via https//github.com/indralab/gilda. Supplementary information Supplementary data are available at Bioinformatics Advances online.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Tipo de estudo:
Prognostic_studies
Idioma:
En
Ano de publicação:
2022
Tipo de documento:
Article