Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome.

Lee, Elliot M; Srinivasan, Sujatha; Purvine, Samuel O; Fiedler, Tina L; Leiser, Owen P; Proll, Sean C; Minot, Samuel S; Deatherage Kaiser, Brooke L; Fredricks, David N

Lee, Elliot M; Srinivasan, Sujatha; Purvine, Samuel O; Fiedler, Tina L; Leiser, Owen P; Proll, Sean C; Minot, Samuel S; Deatherage Kaiser, Brooke L; Fredricks, David N.

Afiliação

Lee EM; Fred Hutchinson Cancer Research Center , Seattle, Washington, DC, USA.
Srinivasan S; University of Washington , Seattle, Washington, DC, USA.
Purvine SO; Fred Hutchinson Cancer Research Center , Seattle, Washington, DC, USA.
Fiedler TL; Pacific Northwest National Laboratory , Richland, Washington, DC, USA.
Leiser OP; Fred Hutchinson Cancer Research Center , Seattle, Washington, DC, USA.
Proll SC; Pacific Northwest National Laboratory , Richland, Washington, DC, USA.
Minot SS; Fred Hutchinson Cancer Research Center , Seattle, Washington, DC, USA.
Deatherage Kaiser BL; Fred Hutchinson Cancer Research Center , Seattle, Washington, DC, USA.
Fredricks DN; Pacific Northwest National Laboratory , Richland, Washington, DC, USA.

mSystems ; 8(4): e0067822, 2023 08 31.

Article em En | MEDLINE | ID: mdl-37350639

Assuntos

Microbiota; Proteômica; Feminino; Humanos; RNA Ribossômico 16S/genética; Proteômica/métodos; Microbiota/genética; Proteínas de Bactérias/genética; Peptídeos/metabolismo; Bactérias

Palavras-chave

database optimization; metagenomics; metaproteomics; microbiome; protein databases; proteomics

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Proteômica / Microbiota Tipo de estudo: Prognostic_studies Limite: Female / Humans Idioma: En Ano de publicação: 2023 Tipo de documento: Article

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