Trackplot: A flexible toolkit for combinatorial analysis of genomic data.
PLoS Comput Biol
; 19(9): e1011477, 2023 09.
Article
em En
| MEDLINE
| ID: mdl-37669275
ABSTRACT
Here, we introduce Trackplot, a Python package for generating publication-quality visualization by a programmable and interactive web-based approach. Compared to the existing versions of programs generating sashimi plots, Trackplot offers a versatile platform for visually interpreting genomic data from a wide variety of sources, including gene annotation with functional domain mapping, isoform expression, isoform structures identified by scRNA-seq and long-read sequencing, as well as chromatin accessibility and architecture without any preprocessing, and also offers a broad degree of flexibility for formats of output files that satisfy the requirements of major journals. The Trackplot package is an open-source software which is freely available on Bioconda (https//anaconda.org/bioconda/trackplot), Docker (https//hub.docker.com/r/ygidtu/trackplot), PyPI (https//pypi.org/project/trackplot/) and GitHub (https//github.com/ygidtu/trackplot), and a built-in web server for local deployment is also provided.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Cromatina
/
Genômica
Idioma:
En
Ano de publicação:
2023
Tipo de documento:
Article