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The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered.
Abarenkov, Kessy; Nilsson, R Henrik; Larsson, Karl-Henrik; Taylor, Andy F S; May, Tom W; Frøslev, Tobias Guldberg; Pawlowska, Julia; Lindahl, Björn; Põldmaa, Kadri; Truong, Camille; Vu, Duong; Hosoya, Tsuyoshi; Niskanen, Tuula; Piirmann, Timo; Ivanov, Filipp; Zirk, Allan; Peterson, Marko; Cheeke, Tanya E; Ishigami, Yui; Jansson, Arnold Tobias; Jeppesen, Thomas Stjernegaard; Kristiansson, Erik; Mikryukov, Vladimir; Miller, Joseph T; Oono, Ryoko; Ossandon, Francisco J; Paupério, Joana; Saar, Irja; Schigel, Dmitry; Suija, Ave; Tedersoo, Leho; Kõljalg, Urmas.
Afiliação
  • Abarenkov K; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
  • Nilsson RH; Department of Biological and Environmental Sciences, University of Gothenburg, Box 453, 405 30 Göteborg, Sweden.
  • Larsson KH; Gothenburg Global Biodiversity Centre, University of Gothenburg, Box 453, 405 30 Göteborg, Sweden.
  • Taylor AFS; Gothenburg Global Biodiversity Centre, University of Gothenburg, Box 453, 405 30 Göteborg, Sweden.
  • May TW; Natural History Museum, University of Oslo, Box 1172 Blindern, 0318 Oslo, Norway.
  • Frøslev TG; The James Hutton Institute, Craigiebuckler, Aberdeen AB15 8QH, UK.
  • Pawlowska J; Institute of Biological and Environmental Sciences, University of Aberdeen, Cruickshank Building, St Machar Drive, Aberdeen AB24 3UU, UK.
  • Lindahl B; Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne, VIC 3004, Australia.
  • Põldmaa K; Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark.
  • Truong C; Institute of Evolutionary Biology, Faculty of Biology, University of Warsaw, ul. Zwirki i Wigury 101, 02-089 Warsaw, Poland.
  • Vu D; Swedish University of Agricultural Sciences, Department of Soil and Environment, Box 7014, SE-750 07 Uppsala, Sweden.
  • Hosoya T; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
  • Niskanen T; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.
  • Piirmann T; Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne, VIC 3004, Australia.
  • Ivanov F; Westerdijk Fungal Biodiversity Institute, The Netherlands.
  • Zirk A; National Museum of Nature and Science, Japan.
  • Peterson M; Botany Unit, Finnish Museum of Natural History, P.O.Box 7, 00014 University of Helsinki, Finland.
  • Cheeke TE; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
  • Ishigami Y; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
  • Jansson AT; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
  • Jeppesen TS; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.
  • Kristiansson E; School of Biological Sciences, Washington State University, 2710 Crimson Way, Richland, WA 9935, USA.
  • Mikryukov V; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.
  • Miller JT; Department of Biological and Environmental Sciences, University of Gothenburg, Box 453, 405 30 Göteborg, Sweden.
  • Oono R; Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark.
  • Ossandon FJ; Department of Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden.
  • Paupério J; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.
  • Saar I; Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark.
  • Schigel D; Department of Ecology, Evolution, and Marine Biology, University of California at Santa Barbara, USA.
  • Suija A; Biome Makers Inc., Davis, CA, USA.
  • Tedersoo L; European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Kõljalg U; Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.
Nucleic Acids Res ; 52(D1): D791-D797, 2024 Jan 05.
Article em En | MEDLINE | ID: mdl-37953409
ABSTRACT
UNITE (https//unite.ut.ee) is a web-based database and sequence management environment for molecular identification of eukaryotes. It targets the nuclear ribosomal internal transcribed spacer (ITS) region and offers nearly 10 million such sequences for reference. These are clustered into ∼2.4M species hypotheses (SHs), each assigned a unique digital object identifier (DOI) to promote unambiguous referencing across studies. UNITE users have contributed over 600 000 third-party sequence annotations, which are shared with a range of databases and other community resources. Recent improvements facilitate the detection of cross-kingdom biological associations and the integration of undescribed groups of organisms into everyday biological pursuits. Serving as a digital twin for eukaryotic biodiversity and communities worldwide, the latest release of UNITE offers improved avenues for biodiversity discovery, precise taxonomic communication and integration of biological knowledge across platforms.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados de Ácidos Nucleicos / Fungos Idioma: En Ano de publicação: 2024 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bases de Dados de Ácidos Nucleicos / Fungos Idioma: En Ano de publicação: 2024 Tipo de documento: Article