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Community recommendations on cryoEM data archiving and validation.
Kleywegt, Gerard J; Adams, Paul D; Butcher, Sarah J; Lawson, Catherine L; Rohou, Alexis; Rosenthal, Peter B; Subramaniam, Sriram; Topf, Maya; Abbott, Sanja; Baldwin, Philip R; Berrisford, John M; Bricogne, Gérard; Choudhary, Preeti; Croll, Tristan I; Danev, Radostin; Ganesan, Sai J; Grant, Timothy; Gutmanas, Aleksandras; Henderson, Richard; Heymann, J Bernard; Huiskonen, Juha T; Istrate, Andrei; Kato, Takayuki; Lander, Gabriel C; Lok, Shee Mei; Ludtke, Steven J; Murshudov, Garib N; Pye, Ryan; Pintilie, Grigore D; Richardson, Jane S; Sachse, Carsten; Salih, Osman; Scheres, Sjors H W; Schroeder, Gunnar F; Sorzano, Carlos Oscar S; Stagg, Scott M; Wang, Zhe; Warshamanage, Rangana; Westbrook, John D; Winn, Martyn D; Young, Jasmine Y; Burley, Stephen K; Hoch, Jeffrey C; Kurisu, Genji; Morris, Kyle; Patwardhan, Ardan; Velankar, Sameer.
Afiliação
  • Kleywegt GJ; EMBL-EBI, Cambridge, United Kingdom.
  • Adams PD; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Butcher SJ; University of Helsinki, Helsinki, Finland.
  • Lawson CL; RCSB Protein Data Bank, The State University of New Jersey, NJ, USA.
  • Rohou A; Genentech, South San Francisco, CA, USA.
  • Rosenthal PB; The Francis Crick Institute, London, United Kingdom.
  • Subramaniam S; University of British Columbia, Vancouver, BC, Canada.
  • Topf M; Birkbeck, University of London, London, United Kingdom.
  • Abbott S; EMBL-EBI, Cambridge, United Kingdom.
  • Baldwin PR; Salk Institute for Biological Studies, La Jolla, CA, USA.
  • Berrisford JM; EMBL-EBI, Cambridge, United Kingdom.
  • Bricogne G; Global Phasing Limited, Cambridge, United Kingdom.
  • Choudhary P; EMBL-EBI, Cambridge, United Kingdom.
  • Croll TI; University of Cambridge, Cambridge, United Kingdom.
  • Danev R; University of Tokyo, Tokyo, Japan.
  • Ganesan SJ; University of California at San Francisco, San Francisco, CA, USA.
  • Grant T; Morgridge Institute for Research, Madison, WI, USA.
  • Gutmanas A; EMBL-EBI, Cambridge, United Kingdom.
  • Henderson R; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
  • Heymann JB; National Institutes of Health, Bethesda, MD, USA.
  • Huiskonen JT; University of Helsinki, Helsinki, Finland.
  • Istrate A; EMBL-EBI, Cambridge, United Kingdom.
  • Kato T; Osaka University, Suita, Osaka, Japan.
  • Lander GC; Scripps Research Institute, La Jolla, CA, USA.
  • Lok SM; Duke-NUS Medical School, Singapore.
  • Ludtke SJ; Baylor College of Medicine, Houston, TX, USA.
  • Murshudov GN; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
  • Pye R; EMBL-EBI, Cambridge, United Kingdom.
  • Pintilie GD; Stanford University, Stanford, CA, USA.
  • Richardson JS; Duke University, Durham, NC, USA.
  • Sachse C; Forschungszentrum Jülich, Germany.
  • Salih O; EMBL-EBI, Cambridge, United Kingdom.
  • Scheres SHW; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
  • Schroeder GF; Forschungszentrum Jülich, Germany.
  • Sorzano COS; National Center for Biotechnology, Madrid, Spain.
  • Stagg SM; Florida State University, Tallahassee, FL, USA.
  • Wang Z; EMBL-EBI, Cambridge, United Kingdom.
  • Warshamanage R; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
  • Westbrook JD; RCSB Protein Data Bank, The State University of New Jersey, NJ, USA.
  • Winn MD; Science and Technology Facilities Council, Research Complex at Harwell, Oxon, United Kingdom.
  • Young JY; RCSB Protein Data Bank, The State University of New Jersey, NJ, USA.
  • Burley SK; RCSB Protein Data Bank, The State University of New Jersey, NJ, USA.
  • Hoch JC; UConn Health Center, CT, USA.
  • Kurisu G; Osaka University, Suita, Osaka, Japan.
  • Morris K; EMBL-EBI, Cambridge, United Kingdom.
  • Patwardhan A; EMBL-EBI, Cambridge, United Kingdom.
  • Velankar S; EMBL-EBI, Cambridge, United Kingdom.
IUCrJ ; 11(Pt 2): 140-151, 2024 Mar 01.
Article em En | MEDLINE | ID: mdl-38358351
ABSTRACT
In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Curadoria de Dados Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Curadoria de Dados Tipo de estudo: Prognostic_studies Idioma: En Ano de publicação: 2024 Tipo de documento: Article