Biodiversity of commercially important finfish species caught by mid-water and bottom trawls from two different coasts of Arabian Sea: Threats and conservation strategies / Biodiversidade de espécies de peixes comercialmente importantes capturadas por redes de arrasto de médio e fundo do Baluchistão e costas de Sindh do mar da Arábia no Paquistão: Ameaças e estratégias de conservação

Abstract This study was conducted to estimate the diversity and the occurrence of commercially important finfish species collected by twenty fish sampling site of Sindh and Baluchistan coasts of the Arabian Sea in Pakistan from January to December 2019. Additionally, physicochemical characteristics of seawater were analyzed from these selected sites and found to be within suitable ranges required for fish growth and survive. A total of 81287 fish individuals were collected and identified as 49 species belonging to 26 families in our study. The most diversified family was Sparidae (13 species) followed by Carangidae and Lutjanidae (4 species), Mullidae, Serranidae, Ariidae (3 species), and Sciaenidae (2 species). The remaining 20 families were represented by only one species. The values of Shannon diversity index calculated for the four selected habitats revealed that high fish diversity was reported at Sonmiani Coast (H'=1.81), while less at Ormara Coast (H'=0.23). Likewise, Evenness index (E) was high at Sonmiani Coast (E=0.50) and less fish diversity was reported at Ormara Coast (E=0.06). Reducing risks to threatened marine species in coastal habitats also requires conservation actions at multiple scales. Thus, it was concluded that our study could be valuable in providing the more information's regarding to the diversity of finfish species and their occurrence along the Pakistan Coast. Further, to better understand the effects, regular monitoring and conservation measures should be taken to mitigate the influence of anthropogenic activities and protect finfish diversity from further decline

Resumo Este estudo foi conduzido para estimar a diversidade e a ocorrência de espécies de peixes comercialmente importantes coletadas por vinte locais de amostragem de peixes nas costas de Sindh e Baluchistão do mar da Arábia, no Paquistão, de janeiro a dezembro de 2019. Além disso, as características físico-químicas da água do mar foram analisadas a partir desses peixes locais selecionados e considerados dentro dos intervalos adequados necessários para o crescimento e sobrevivência dos peixes. Um total de 8.1287 indivíduos de peixes foi coletado e identificado como 49 espécies pertencentes a 26 famílias em nosso estudo. A família mais diversificada foi Sparidae (13 espécies), seguida por Carangidae e Lutjanidae (4 espécies), Mullidae, Serranidae, Ariidae (3 espécies) e Sciaenidae (2 espécies). As 20 famílias restantes foram representadas por apenas uma espécie. Os valores do índice de diversidade de Shannon calculados para os quatro habitats selecionados revelaram que uma alta diversidade de peixes foi relatada na costa Sonmiani (H' = 1,81), enquanto menos na costa Ormara (H' = 0,23). Da mesma forma, o índice de regularidade (E) foi alto na costa de Sonmiani (E = 0,50) e menos diversidade de peixes foi relatada na costa de Ormara (E = 0,06). A redução dos riscos para as espécies marinhas ameaçadas em habitats costeiros também requer ações de conservação em várias escalas. Assim, concluiu-se que nosso estudo pode ser valioso para fornecer mais informações sobre a diversidade de espécies de peixes finos e sua ocorrência ao longo da costa do Paquistão. Além disso, para compreender melhor os efeitos, medidas regulares de monitoramento e conservação devem ser tomadas para mitigar a influência das atividades antropogênicas e proteger a diversidade de peixes finos de um declínio maior.

Biodiversity of commercially important finfish species caught by mid-water and bottom trawls from two different coasts of Arabian Sea: threats and conservation strategies / Biodiversidade de espécies de peixes comercialmente importantes capturadas por redes de arrasto de médio e fundo do Baluchistão e costas de Sindh do mar da Arábia no Paquistão: ameaças e estratégias de conservação

This study was conducted to estimate the diversity and the occurrence of commercially important finfish species collected by twenty fish sampling site of Sindh and Baluchistan coasts of the Arabian Sea in Pakistan from January to December 2019. Additionally, physicochemical characteristics of seawater were analyzed from these selected sites and found to be within suitable ranges required for fish growth and survive. A total of 81287 fish individuals were collected and identified as 49 species belonging to 26 families in our study. The most diversified family was Sparidae (13 species) followed by Carangidae and Lutjanidae (4 species), Mullidae, Serranidae, Ariidae (3 species), and Sciaenidae (2 species). The remaining 20 families were represented by only one species. The values of Shannon diversity index calculated for the four selected habitats revealed that high fish diversity was reported at Sonmiani Coast (H’=1.81), while less at Ormara Coast (H’=0.23). Likewise, Evenness index (E) was high at Sonmiani Coast (E=0.50) and less fish diversity was reported at Ormara Coast (E=0.06). Reducing risks to threatened marine species in coastal habitats also requires conservation actions at multiple scales. Thus, it was concluded that our study could be valuable in providing the more information’s regarding to the diversity of finfish species and their occurrence along the Pakistan Coast. Further, to better understand the effects, regular monitoring and conservation measures should be taken to mitigate the influence of anthropogenic activities and protect finfish diversity from further decline.

Este estudo foi conduzido para estimar a diversidade e a ocorrência de espécies de peixes comercialmente importantes coletadas por vinte locais de amostragem de peixes nas costas de Sindh e Baluchistão do mar da Arábia, no Paquistão, de janeiro a dezembro de 2019. Além disso, as características físico-químicas da água do mar foram analisadas a partir desses peixes locais selecionados e considerados dentro dos intervalos adequados necessários para o crescimento e sobrevivência dos peixes. Um total de 8.1287 indivíduos de peixes foi coletado e identificado como 49 espécies pertencentes a 26 famílias em nosso estudo. A família mais diversificada foi Sparidae (13 espécies), seguida por Carangidae e Lutjanidae (4 espécies), Mullidae, Serranidae, Ariidae (3 espécies) e Sciaenidae (2 espécies). As 20 famílias restantes foram representadas por apenas uma espécie. Os valores do índice de diversidade de Shannon calculados para os quatro habitats selecionados revelaram que uma alta diversidade de peixes foi relatada na costa Sonmiani (H’ = 1,81), enquanto menos na costa Ormara (H’ = 0,23). Da mesma forma, o índice de regularidade (E) foi alto na costa de Sonmiani (E = 0,50) e menos diversidade de peixes foi relatada na costa de Ormara (E = 0,06). A redução dos riscos para as espécies marinhas ameaçadas em habitats costeiros também requer ações de conservação em várias escalas. Assim, concluiu-se que nosso estudo pode ser valioso para fornecer mais informações sobre a diversidade de espécies de peixes finos e sua ocorrência ao longo da costa do Paquistão. Além disso, para compreender melhor os efeitos, medidas regulares de monitoramento e conservação devem ser tomadas para mitigar a influência das atividades antropogênicas e proteger a diversidade de peixes finos de um declínio maior.

Spatio-temporal variability in the Cladocera assemblage of a subtropical hypersaline lagoon / Variabilidade espaço-temporal da assembleia de Cladocera de uma lagoa hipersalina subtropical

Cladocera represent an important zooplankton group because of their seasonal prominence in terms of abundance and their contribution in controlling primary production (phytoplankton). On a global scale, there are few studies on Cladocera in hypersaline environments. The present work aims to evaluate the spatio-temporal variation of the Cladocera assemblage across a salinity gradient in the habitats of the Araruama Lagoon. Samples were collected in random months over a period of four years at 12 fixed stations in the Araruama Lagoon using a WP2 plankton net equipped with a flow meter. Our results do not reveal significant influence of the tide and seasonal variation as factors affecting the Cladocera assemblage. Five Cladocera species were found in the Araruama Lagoon, only in stations 11 and 12 where they reached an average of 1,799 ± 3,103 ind. m-³. The mean of the Shannon Diversity Index was 0.45 ± 0.2. The species that stood out in terms of frequency and abundance were: Penilia avirostris (frequency of occurrence: 71%), followed by Pseudevadne tergestina (41%). The same species also stood out in terms of relative abundance, Penilia avirostris (87%) and Pseudevadne tergestina (11%). The absence of Cladocera in the innermost parts of the lagoon suggests that their entrance to these locations is possibly inhibited by the salinity and temperature gradient of the lagoon, being the main factors influencing the dynamics of the Cladocera assemblages.

Os cladóceros representam um importante grupo de zooplâncton, devido ao seu destaque sazonal em termos de abundância e à sua contribuição no controlo da produção primária (fitoplâncton). Em escala global, há poucos estudos com Cladocera em ambientes hipersalinos. O presente trabalho tem como objetivo avaliar a variação espaço-temporal da assembleia de Cladocera em um gradiente de salinidades da Lagoa de Araruama. As amostras foram coletadas em meses aleatórios, durante um período de quatro anos, em 12 estações fixas na Lagoa de Araruama, utilizando uma rede de plâncton WP2 equipada com um fluxômetro. Os nossos resultados não revelam uma influência significativa da maré e da variação sazonal como fatores que afetam a assembleia de Cladocera. Cinco espécies de Cladocera foram encontradas na Lagoa de Araruama. A assembleia apresentou maior densidade absoluta estações 12 e 11, atingindo uma a média de 1.799 ± 3.103 inds-³. A média do Índice de Diversidade de Shannon foi de 0,45 ± 0,2. As espécies que se destacaram em termos de frequência e abundância foram: Penilia avirostris (frequência de ocorrência: 71%), seguida de Pseudevadne tergestina (41%). As mesmas espécies também se destacaram em termos de abundância relativa Penilia avirostris (87%) e Pseudevadne tergestina (11%). A ausência de Cladocera nas partes mais interiores da lagoa sugere que a sua entrada nestes locais é possivelmente inibida pela salinidade e gradiente de temperatura da lagoa, sendo os principais fatores que influenciam a dinâmica da assembleia de Cladocera.

Linking fish and crustacean taxonomic composition with seasonal contrasts in the soft-bottom intertidal zone / Ligação da composição taxonômica de peixes e crustáceos com contrastes sazonais na zona intertidal de fundo macio

Abstract The primary objective of this study was to investigate the seasonal fish and crustacean variations concerning taxonomic composition, species richness, and diversity in sandy beach habitat. For this purpose, we investigated the Sonmiani Hor lagoon area during four distinct seasons, i.e., northeast (NE) monsoon, pre-monsoon, south-west (SW) monsoon, and post-monsoon for one year. During each haul, the net was pulled about 100m along the beach in 0.5m depth. The results showed a strong linear correlation between the diversity index and equitability in fishes (r = 0.978). The diversity index was strong negatively correlated with the abundance and biomass (r = -0.978, -0.972, respectively). The physical attributes like sea surface water temperature and salinity showed a strong negative effect on species assemblages (r = -0.981 and -0.943, respectively). The mean air and water temperature illustrated approximately 3°C difference during NE and pre-monsoon seasons. However, salinity, pH, and electrical conductivity did not show any significant seasonal variabilities. Under the ecological indices, the fish species displayed higher diversity (H' = 3.19) during SW monsoon, whereas the lowest diversity was observed during pre-monsoon (H' = 1.58). The equitability and species richness, however, remained more noticeable during SW monsoon (J' = 0.81). The total number of individuals of fish and crustaceans reached 4799 with 3813 fish individuals and 986 individuals of crustaceans. A total of 27 families of fish while five crustacean families comprising of 30 genera and 38 fish species while ten genera and 17 species of crustaceans were recorded. Liza subviridis displayed the highest abundance among the sampled fish species. In conclusion, fish species constituted a significant part of the coastal fauna in the study area. The seasonal variations displayed distinct variations in fish species composition and diversity.

Resumo O objetivo principal deste estudo foi investigar as variações sazonais de peixes e crustáceos em relação à composição taxonômica, riqueza de espécies e diversidade no habitat de praias arenosas. Para esse fim, investigamos a área da lagoa Sonmiani Hor durante quatro estações distintas, ou seja, monção nordeste (NE), pré-monção, monção sudoeste (SW) e pós-monção, por um ano. Durante cada transporte, a rede foi puxada cerca de 100 m ao longo da praia, a 0,5 m de profundidade. Os resultados mostraram uma forte correlação linear entre o índice de diversidade e a equitabilidade de peixes (r = 0,978). O índice de diversidade apresentou forte correlação negativa com a abundância e a biomassa (r = -0,978 e -0,972, respectivamente). Os atributos físicos, como temperatura da água da superfície do mar e salinidade, apresentaram forte efeito negativo sobre o conjunto de espécies (r = -0,981 e -0,943, respectivamente). A temperatura média do ar e da água teve uma diferença de aproximadamente 3 °C durante a monção NE e a pré-monção. No entanto, salinidade, pH e condutividade elétrica não apresentaram variabilidade sazonal significativa. A respeito dos índices ecológicos, as espécies de peixes apresentaram maior diversidade (H' = 3,19) durante a monção SW, enquanto a menor diversidade observada foi na pré-monção (H' = 1,58). A equitabilidade e a riqueza de espécies, no entanto, permaneceram mais perceptíveis durante a monção SW (J' = 0,81). O número total de peixes e crustáceos foi de 4.799, com 3.813 peixes e 986 crustáceos. Foram registradas 27 famílias de peixes e 5 famílias de crustáceos, com 30 gêneros e 38 espécies de peixes, além de 10 gêneros e 17 espécies de crustáceos. Liza subviridis apresentou a maior abundância entre as espécies de peixes amostradas. Em conclusão, as espécies de peixes constituíram uma parte significativa da fauna costeira na área de estudo. As variações sazonais apresentaram variações distintas na composição e diversidade das espécies de peixes.

Impacto del cambio climático en la salud / The impact of climate change on health

Climate changes evidenced by an increase in our planet's mean temperature, changes in rainfall, increased sea level and extreme weather conditions, favor air and soil contamination, ocean acidification, droughts, floods, heat waves and forest fires, which affect the health and wellbeing of exposed populations. These changes will exert negative effects on respiratory and cardiovascular systems, nutritional status, burden of infectious diseases, especially vector-borne infections, and human mental health. Moreover, environmental damages, such as loss of biodiversity, ecological collapse and deterioration of socioeconomic factors such as agricultural and fishery production, and the loss of habitable land, will impulse massive migrations. This article summarizes the impact that climate change is expected to have on respiratory, cardiovascular and infectious diseases and its repercussions on people of extreme ages. It is imperative to achieve the immediate commitment of worldwide national governments to control green-house gas emissions. The appropriate technology does exist, but political will is urgently needed to accomplish this goal.

Occurrence of Caligus asperimanus Pearse, 1951 (Copepoda: Caligidae) parasitic Lutjanus spp. (Perciformes: Lutjanidae) in the western South Atlantic / Ocorrência de Caligus asperimanus Pearse, 1951 (Copepoda: Caligidae) parasitos de Lutjanus spp. (Perciformes: Lutjanidae) no Atlântico Sul ocidental

Abstract Sea lice are widespread copepods in marine teleost around the world. In this paper the first record of Caligus asperimanus Pearse, 1951 in the Western South Atlantic is documented parasitizing Lutjanus jocu and Lutjanus vivanus caught from coastal zones of Espírito Santo and Rio de Janeiro State, respectively.

Resumo Os piolhos marinhos são copépodes abrangentemente relatados em teleósteos marinhos ao redor do mundo. Neste estudo, é documentado o primeiro registro de Caligus asperimanus Pearse, 1951, no Atlântico Sul Ocidental, parasitando Lutjanus jocu e Lutjanus vivanus capturados nas zonas costeiras do Espírito Santo e Rio de Janeiro, respectivamente.

Isolation and partial characterization of a new moderate thermophilic Albidovulum sp. SLM16 with transaminase activity from Deception Island, Antarctica

BACKGROUND: A moderately thermophilic, slightly halophilic, aerobic, Gram-stain negative, bacterial strain, SLM16, was isolated from a mixed of seawater-sand-sediment sample collected from a coastal fumarole located in Whalers Bay, Deception Island, Antarctica. The aim was to screen for thermophilic microorganisms able to degrade primary amines and search for amine transaminase activity for potential industrial application. RESULTS: Identification and partial characterization of the microorganism SLM16 were carried out by means of morphological, physiological and biochemical tests along with molecular methods. Cells of strain SLM16 were non-motile irregular rods of 1.5-2.5 µm long and 0.3-0.45 µm wide. Growth occurred in the presence of 0.5-5.5% NaCl within temperature range of 35-55 °C and pH range of 5.5-9.5, respectively. The DNA G+C composition, estimated from ftsY gene, was 66% mol. Phylogenetic analysis using de 16S rRNA gene sequence showed that strain SLM16 belongs to the marine bacterial genus Albidovulum. CONCLUSION: Strain SLM16 is a moderate thermophilic Gram negative microorganisms which belongs to the marine bacterial genus Albidovulum and is closely related to Albidovulum inexpectatum species based on phylogenetic analysis. Additionally, amine-transaminase activity towards the arylaliphatic amine α-methylbenzylamine was detected.

Polycyclic aromatic hydrocarbons degradation by marine-derived basidiomycetes: optimization of the degradation process

ABSTRACT Pyrene and benzo[a]pyrene (BaP) are high molecular weight polycyclic aromatic hydrocarbons (PAHs) recalcitrant to microbial attack. Although studies related to the microbial degradation of PAHs have been carried out in the last decades, little is known about degradation of these environmental pollutants by fungi from marine origin. Therefore, this study aimed to select one PAHs degrader among three marine-derived basidiomycete fungi and to study its pyrene detoxification/degradation. Marasmiellus sp. CBMAI 1062 showed higher levels of pyrene and BaP degradation and was subjected to studies related to pyrene degradation optimization using experimental design, acute toxicity, organic carbon removal (TOC), and metabolite evaluation. The experimental design resulted in an efficient pyrene degradation, reducing the experiment time while the PAH concentration applied in the assays was increased. The selected fungus was able to degrade almost 100% of pyrene (0.08 mg mL-1) after 48 h of incubation under saline condition, without generating toxic compounds and with a TOC reduction of 17%. Intermediate metabolites of pyrene degradation were identified, suggesting that the fungus degraded the compound via the cytochrome P450 system and epoxide hydrolases. These results highlight the relevance of marine-derived fungi in the field of PAH bioremediation, adding value to the blue biotechnology.

Methods for the genetic manipulation of marine bacteria

Genetic manipulation of bacteria is a procedure necessary to obtain new strains that express peculiar and defined genetic determinants or to introduce genetic variants responsible for phenotypic modifications. This procedure can be applied to explore the biotechnological potential associated with environmental bacteria and to utilize the functional properties of specific genes when inserted into an appropriate host. In the past years, marine bacteria have received increasing attention because they represent a fascinating reservoir of genetic and functional diversity that can be utilized to fuel the bioeconomy sector. However, there is an urgent need for an in-depth investigation and improvement of the genetic manipulation tools applicable to marine strains because of the paucity of knowledge regarding this. This review aims to describe the genetic manipulation methods hitherto used in marine bacteria, thus highlighting the limiting factors of the different techniques available today to increase manipulation efficiency. In particular, we focus on methods of natural and artificial transformations (especially electroporation) and conjugation because they have been successfully applied to several marine strains. Finally, we emphasize that, to avoid failure, future work should be carried out to establish tailored methodologies for marine bacteria.

Draft genome sequence of Vitellibacter aquimaris D-24T isolated from seawater

ABSTRACT Vitellibacter aquimaris D-24T (=KCTC 42708T = DSM 101732T), a halophilic marine bacterium, was isolated from seawater collected from Desaru beach, Malaysia. Here, we present the draft genome sequence of D-24T with a genome size of approximately 3.1 Mbp and G + C content of 39.93%. The genome of D-24T contains genes involved in reducing a potent greenhouse gas (N2O) in the environment and the degradation of proteinaceous compounds. Genome availability will provide insights into potential biotechnological and environmental applications of this bacterium.

The effect of different nasal irrigation solutions following septoplasty and concha radiofrequency: a prospective randomized study / Efeito de diferentes soluções para irrigação nasal após septoplastia e radiofrequência das conchas nasais: estudo prospectivo e randomizado

Abstract Introduction Nasal irrigation solutions are widely used following endonasal surgery. These irrigation solutions remove infective debris and crusts, reducing the probability of synechia formation, and accelerate mucosal healing. Objective The aim of the present study was to compare the effects of nasal irrigation solutions with different contents following septoplasty and concha radiofrequency. Methods The present study was a prospective, randomized, controlled simple blind study of 120 patients who underwent septoplasty and bilateral concha radiofrequency. Patients were divided into four groups according to the nasal irrigation solution used: tap water, buffered isotonic saline, saline with xylitol, and hypertonic sea water. Patients were examined on the 7th and 15th postoperative days. A saccharine test was applied to determine mucociliary activity preoperatively and on the 7th and 15th postoperative days. Patients were asked about drying and obstruction using a 10 cm visual analog scale. In addition, patients were examined to determine the crusting score. Results There was no significant difference found in the preoperative and 7th and 15th postoperative days' mucociliary clearance times among the four groups. The crusting score was found to be significantly lower in the hypertonic sea water group (p < 0.001). Drying and obstruction on the 7th and 15th postoperative days were found to be significantly more comfortable in the hypertonic sea water group (p < 0.001). Conclusion Hypertonic sea water is the recommended irrigation solution, as it is associated with less crusting, drying, and obstruction in the nose for the postoperative period following septoplasty and concha radiofrequency.

Resumo Introdução Soluções para irrigação nasal são amplamente usadas após cirurgias endonasais. Essas soluções removem os resíduos e crostas, reduzem a probabilidade de formação de sinéquias e aceleram a cicatrização da mucosa. Objetivo O objetivo do presente estudo foi comparar os efeitos das soluçoes para irrigaçao nasal com diferentes conteudos apos septoplastia e turbinoplastia com radiofrequencia. Método O presente estudo foi um estudo cego simples, randomizado, controlado e prospectivo de 120 pacientes submetidos a septoplastia e turbinoplastia bilateral com radiofrequencia. Os pacientes foram divididos em quatro grupos de acordo com a soluçao nasal utilizada: agua da torneira, soluçao salina isotonica tamponada, soluçao salina com xilitol e agua do mar hipertonica. Os pacientes foram examinados no 7° e 15° dias do pos-operatorio. O teste de sacarina foi utilizado para determinar a atividade mucociliar pre-operatoria e no 7° e 15° dias do pos-operatorio. Os pacientes foram questionados sobre a sensaçao de secura e obstruçao nasais utilizando uma escala visual analógica de 10 cm. Alem disso, os pacientes foram examinados para determinar o escore em relaçao a crostas. Resultados Não houve diferença significativa entre o pré-operatório e o sétimo e 15° dias do pós-operatório dos tempos de clearance mucociliar entre os quatro grupos. Verificou-se que o escore em relação a crostas foi significativamente menor no grupo que usou água do mar hipertônica (p < 0,001). As sensações de secura e obstrução nasais no sétimo e 15° dias do pós-operatório mostraram-se significativamente mais confortáveis no grupo água do mar hipertônica (p < 0,001). Conclusão A água de mar hipertônica é a solução de irrigação recomendada, pois está associada a menor incidência de crostas, secura e obstrução nasais no pós-operatório de cirurgia de septoplastia e das conchas nasais com radiofrequência.

Isolation and molecular characterization of Thraustochytrium strain isolated from Antarctic Peninsula and its biotechnological potential in the production of fatty acids

ABSTRACT Thraustochytrids are unicellular protists belonging to the Labyrinthulomycetes class, which are characterized by the presence of a high lipid content that could replace conventional fatty acids. They show a wide geographic distribution, however their diversity in the Antarctic Region is rather scarce. The analysis based on the complete sequence of 18S rRNA gene showed that strain 34-2 belongs to the species Thraustochytrium kinnei, with 99% identity. The total lipid profile shows a wide range of saturated fatty acids with abundance of palmitic acid (16:0), showing a range of 16.1-19.7%. On the other hand, long-chain polyunsaturated fatty acids, mainly docosahexaenoic acid and eicosapentaenoic acid are present in a range of 24-48% and 6.1-9.3%, respectively. All factors analyzed in cells (biomass, carbon consumption and lipid content) changed with variations of culture temperature (10 °C and 25 °C). The growth in glucose at a temperature of 10 °C presented the most favorable conditions to produce omega-3fatty acid. This research provides the identification and characterization of a Thraustochytrids strain, with a total lipid content that presents potential applications in the production of nutritional supplements and as well biofuels.

Early bacterial biofilm colonizers in the coastal waters of Mauritius

Background: The past years have witnessed a growing number of researches in biofilm forming communities due to their environmental and maritime industrial implications. To gain a better understanding of the early bacterial biofilm community, microfiber nets were used as artificial substrates and incubated for a period of 24 h in Mauritian coastal waters. Next-generation sequencing technologies were employed as a tool for identification of early bacterial communities. Different genes associated with quorum sensing and cell motility were further investigated. Results: Proteobacteria were identified as the predominant bacterial microorganisms in the biofilm within the 24 h incubation, of which members affiliated to Gammaproteobacteria, Alphaproteobacteria and Betaproteobacteria were among the most abundant classes. The biofilm community patterns were also driven by phyla such as Firmicutes, Bacteroidetes, Chloroflexi, Actinobacteria and Verrucomicrobia. The functional analysis based on KEGG classification indicated high activities in carbohydrate, lipid and amino acids metabolism. Different genes encoding for luxI, lasI, agrC, flhA, cheA and cheB showed the involvement of microbial members in quorum sensing and cell motility. Conclusion: This study provides both an insight on the early bacterial biofilm forming community and the genes involved in quorum sensing and bacterial cell motility.

Draft genome analysis of Dietzia sp. 111N12-1, isolated from the South China Sea with bioremediation activity

Abstract Dietzia sp. 111N12-1, isolated from the seawater of South China Sea, shows strong petroleum hydrocarbons degradation activity. Here, we report the draft sequence of approximately 3.7-Mbp genome of this strain. To the best of our knowledge, this is the first genome sequence of Dietzia strain isolated from the sea. The genome sequence may provide fundamental molecular information on elucidating the metabolic pathway of hydrocarbons degradation in this strain.

Draft genome of Nocardia farcinica TRH1, a linear and polycyclic aromatic hydrocarbon-degrading bacterium isolated from the coast of Trindade Island, Brazil

Abstract Here, we report the draft genome sequence and annotation of Nocardia farcinica TRH1, a petroleum hydrocarbons degrading Actinobacteria isolated from the coastal water of Trindade Island, Brazil.

Emissários submarinos de esgotos como alternativa à minimização de riscos à saúde humana e ambiental / Ocean outfalls as an alternative to minimizing risks to human and environmental health

Resumo Emissários submarinos são apresentados como uma eficiente alternativa para o destino final de efluentes sanitários em regiões costeiras densamente povoadas em virtude da elevada capacidade de dispersão e depuração da matéria orgânica no ambiente marinho, e por demandar pequenas áreas para sua implementação. A probabilidade de condições improprias de balneabilidade, em áreas costeiras adjacentes aos emissários submarinos de esgotos de Ipanema, Barra da Tijuca e Icaraí, é avaliada com base em metodologia computacional probabilística que contempla em conjunto a modelagem hidrodinâmica, de transporte e decaimento bacteriano. Os resultados mostram que as concentrações de coliformes fecais são influenciadas fortemente pela radiação solar e todos os fatores responsáveis por sua mitigação no ambiente marinho. Os referidos emissários não comprometem a balneabilidade na região costeira, visto que as condições improprias de balneabilidade são restringidas às regiões adjacentes aos pontos de lançamento do efluente. A poluição observada nas praias é indicativa da contaminação que ocorre pelos sistemas lagunares, rios e canais ambientalmente degradados.

Abstract Submarine outfalls are proposed as an efficient alternative for the final destination of wastewater in densely populated coastal areas, due to the high dispersal capacity and the clearance of organic matter in the marine environment, and because they require small areas for implementation. This paper evaluates the probability of unsuitable bathing conditions in coastal areas nearby to the Ipanema, Barra da Tijuca and Icaraí outfalls based on a computational methodology gathering hydrodynamic, pollutant transport, and bacterial decay modelling. The results show a strong influence of solar radiation and all factors that mitigate its levels in the marine environment on coliform concentration. The aforementioned outfalls do not pollute the coastal areas, and unsuitable bathing conditions are restricted to nearby effluent launching points. The pollution observed at the beaches indicates that the contamination occurs due to the polluted estuarine systems, rivers and canals that flow to the coast.

Some intertidal and shallow water polychaetes of the Caribbean coast of Costa Rica / Poliquetos de la zona intermareal y aguas someras de la costa del Caribe costarricense

Abstract:The polychaete fauna of the Caribbean coast of Costa Rica has been inadequately characterized with only nine species previously reported. Collections of polychaetes from intertidal coralline rocks and several shallow sub-tidal sites on the Caribbean coast of Costa Rica have been examined and 68 species were identified. Of these, 66 are new records for Costa Rica. Rev. Biol. Trop. 65 (1): 127-152. Epub 2017 March 01.

ResumenLa fauna de poliquetos en la costa del Caribe costarricense se ha descrito inadecuadamente con solo 9 especies reportadas anteriormente. Se estudiaron los poliquetos de de las rocas coralinas intermereales y varios sitios submareales someros en la costa del Caribe costarricense y se identificaron 68 especies, de las cuales 66 son nuevos registros para Costa Rica.

Distribution of the deep-sea genus Bathypterois (Pisces: Ipnopidae) in the Eastern Central Pacific / Distribución del género de profundidad Bathypterois (Pisces: Ipnopidae) en el Pacífico Centro Oriental

Abstract:The genus Bathypterois (tripod fish) comprises 19 species of deep-sea fishes distributed worldwide. The biology and distribution of the species of this genus are relatively poorly known throughout the Eastern Central Pacific (ECP). This work aims to update the geographic and bathymetric distribution of species of Bathypterois throughout the ECP. To describe the influence of depth, temperature and dissolved oxygen concentrations (DO) on latitudinal and depth distribution of members of the genus throughout the Mexican Pacific, 51 specimens of B.atricolor (12 trawls) and 112 of B. ventralis (18 trawls), collected during TALUD project, were analyzed. Bathypterois atricolor had broader environmental niches (depth: 0.47, temperature: 0.46, DO: 0.39), and inhabits deeper and colder sites (Electivity positives: > 1 000 m, < 3.2 °C, 1.0-1.62 mL/L) than B. ventralis, which had narrow environmental niches (depth: 0.34, temperature: 0.32, DO: 0.28), with high affinity to warmer sites and lower DO concentrations (Electivity positives: 778-1 400 m, 3.3-5.8 °C, < 1.0 mL/L). Both species used different environmental strata (niche overlap; depth: 0.34, temperature: 0.32, DO: 0.28). The adaptation of B. atricolor to live in a broad range of DO concentrations explains its almost circumglobal distribution, while B. ventralis lives almost permanently in the Oxygen Minimum Zone (< 0.05 mL/L), so the DO could be a limiting factor, reducing its potential geographic and bathymetric distributions. None of these species had been previously recorded in the central Gulf of California, and B. ventralis had not been recorded along the West coast of Baja California. This study confirms that both species have a continuous distribution within the ECP, our new records extended the known northernmost range for B. atricolor by 886 km (from 22°46' N to 30°45' N) and for B. ventralis by 645 km (from 21°18' N to 27°07' N). Rev. Biol. Trop. 65 (1): 89-101. Epub 2017 March 01.

ResumenEl género Bathypterois (peces trípode) está conformado por 19 especies de peces de profundidad, distribuidas alrededor del mundo. La biología y distribución de las especies de este género son relativamente poco conocidas a lo largo del Pacífico Centro Oriental (POT). Este trabajo tiene el objetivo de actualizar la distribución geográfica y batimétrica de las especies del género Bathypterois a lo largo del POT. Para describir la influencia de la profundidad, temperatura y concentraciones de oxígeno disuelto (OD) sobre la distribución latitudinal y batimétrica de miembros del género Bathypterois en el Pacífico Mexicano, se analizaron 51 especímenes de B.atricolor (12 arrastres) y 112 B. ventralis (18 arrastres), recolectados durante el proyecto TALUD. Bathypterois atricolor presentó nichos ambientales más amplios (profundidad: 0.47, temperatura: 0.46, OD: 0.39) y habita sitios más profundos y fríos (Electividad positiva: > 1 000 m, < 3.2 °C, 1.0 - 1.62 mL/L) en comparación con B. ventralis, que tiene nichos ambientales reducidos (profundidad: 0.34, temperatura: 0.32, OD: 0.28), con alta afinidad por sitios más cálidos y bajas concentraciones de OD (Electividad positiva: 778-1 400 m, 3.3-5.8 °C, < 1.0 mL/L). Estas especies utilizaron distintos estratos ambientales (traslape de nicho; profundidad: 0.34, temperatura: 0.32, OD: 0.28). La adaptación de B. atricolor para vivir en un amplio intervalo de concentraciones de OD explica su distribución casi circunglobal, mientras que B. ventralis vive casi permanentemente en la Zona de Mínimo Oxígeno (< 0.05 mL/L), por lo que el OD puede ser un factor limitante, reduciendo su posible distribución geográfica y batimétrica. Ninguna de estas especies había sido registrada anteriormente en el centro del Golfo de California, así como B. ventralis no había sido reportada a lo largo de la costa occidental de Baja California. Este estudio confirma que ambas especies tienen una distribución continua dentro del POT, nuestros nuevos registros extienden la distribución más norteña conocida para B. atricolor en 886 km (de 22°46' N a 30°45' N) y en 645 km para B. ventralis (de 21°18' N a 27°07' N).

Distribución y abundancia espacial y temporal de Stomolophus meleagris (Rhizostomae: Stomolophidae) en un sistema lagunar del sur del Golfo de México / Spatial and temporal abundance and distribution of Stomolophus meleagris (Rhizostomae: Stomolophidae) in a lagoon system Southern Gulf of Mexico

ResumenLas escifomedusas se alimentan principalmente de crustáceos microscópicos, huevos y larvas de peces, moluscos y de otras medusas. La distribución y abundancia de la escifomedusa tiene una importancia económica y ecológica ya que son depredadores que influyen en la dinámica poblacional de otras pesquerías. El presente trabajo se realizó de septiembre 2013 hasta agosto 2014 en el sistema lagunar Arrastradero-Redonda, Tabasco, con el objetivo de aportar información sobre la distribución y abundancia espacial y temporal de la escifomedusa Stomolophus meleagris y su relación con los parámetros ambientales. Para su realización se efectuaron recorridos mensuales durante un ciclo anual y se recolectaron muestras biológicas; realizándose tres arrastres en cada una de las estaciones, en una área de 1 km2, con una duración de 5 a 10 min con un chinchorro playero de monofilamento de 20 m de longitud por 3 m de altura y luz de malla de 1.5 cm, con esos datos se realizó el análisis de eficiencia pesquera, (CPUE con Org./Unidad de superficie evaluada) y se determinó la relación con los parámetros ambientales. Se estableció que la mayor abundancia se presentó de la estación 1 a la 3 con 7 a 19 Org/km2 en los meses de abril hasta agosto 2014 y su menor abundancia se observó en las estaciones 6 a 10 con un promedio de 1 Org./km2 desde octubre 2013 a marzo 2014. El análisis de correlación múltiple por pasos indicó que existe una fuerte asociación entre la CPUE y algunas variables ambientales estudiadas, observándose el 70.9 % de la variabilidad de los datos. La salinidad fue la variable más influyente explicando el 64.3 % de la variabilidad, seguida por la temperatura con un 3.6 % mientras el oxígeno disuelto explica solo el 2.9 % de variabilidad, principalmente debido a que en la zona confluyen una serie de factores geológicos, oceanográficos y biológicos favorables para la proliferación de esta especie debido al aporte de agua marina de la barra de Tupilco. Sin embargo falta realizar mayores investigaciones que permita cuantificar este recurso y establecer zonas de explotación comercial y realizar estudios sobre el aspecto biológico, principalmente hábitos reproductivos y alimenticios; que aporten información necesaria para diseñar planes adecuados sobre su posible uso de manera adecuada. Así mismo con los datos obtenidos en el presente trabajo podamos determinar el potencial pesquero de este recurso en el estado de Tabasco.

Abstract:The scyphomedusae feed mainly on microscopic crustaceans, eggs and fish larvae, molluscs and some other jellyfishes. The distribution and abundance of the scyphomedusae has an economic and ecological impact as they are predators that have an influence on the population dynamics of other fisheries. This investigation took place in the lagoon system 'ArrastraderoRedonda', Tabasco, from September 2013 to August 2014, with the purpose to provide information on the distribution, and spatial and temporal abundance of Stomolophus meleagris; along with its relation to environmental parameters. A total of 10 stations were defined and biological samples were taken on a monthly basis during this annual cycle. For this purpose, three pulls with a beach seine monofilament (20 m long by 3 m height, mesh opening 1.5 cm, 5 to 10 minutes) per station were made within a 1 km2 area. Information obtained was used to calculate the fishing efficiency analysis (CPUE con org./Evaluated Area Unit) and to determine the relationship with the environmental parameters. Our results showed that the abundance in the stations 1 to 3 was from 7 to 19 org./km2 from April to August 2014; less organisms were observed in stations 6 to 10 (an average of 1 org./ km2) from October 2013 to March 2014. The multiple correlation steps analysis indicated that there is a strong association between the CPUE and some environmental investigated variables, and a 70.9 % variability of the data was observed. The salinity resulted the most important variable because it determined a 64.3 % of variation; it was followed by the temperature with a 3.6 %; meanwhile, dissolved oxygen explained only the 2.9 %, this was mainly because within the area there are several geological, oceanographic and biological factors that favor the distribution of this species due to seawater contribution through the Tupilco bar. With the provided data with this investigation we were able to determine the fishery potential of this resource for Tabasco state. However, additional research is required to allow an extended quantification of this resource, to determine the commercial exploitation areas, and drive studies about reproductive and feeding habits, that may provide the necessary information to establish plans for sustainable use. Rev. Biol. Trop. 65 (1): 167-179. Epub 2017 March 01.

Galápagos macroalgae: A review of the state of ecological knowledge / Macroalgas de Galápagos: una revisión del estado del conocimiento ecológico

Abstract:Previous work has highlighted the critical role of macroalgal productivity and dynamics in supporting and structuring marine food webs. Spatio-temporal variability in macroalgae can alter coastal ecosystems, a relationship particularly visible along upwelling-influenced coastlines. As a result of its equatorial location and nutrient rich, upwelling-influenced waters, the Galápagos Archipelago in the East Pacific, hosts a productive and biodiverse marine ecosystem. Reports and collections of macroalgae date back to the Beagle voyage, and since then, more than three hundred species have been reported. However, their ecology and functional role in the ecosystem is not well understood. According to various disparate and in part anecdotal sources of information, abundant and diverse communities exist in the Western regions of the archipelago, the North is essentially barren, and in the central/South abundance and distribution is variable and less well defined. Both oceanographic conditions and herbivore influence have been theorized to cause this pattern. Extensive changes in macroalgal productivity and community composition have occurred during strong ENSO events, and subsequent declines in marine iguana (an endemic and iconic grazer) populations have been linked to these changes. Iguanas are only one species of a diverse and abundant group of marine grazers in the system, highlighting the potentially important role of macroalgal productivity in the marine food web. This review represents a first compilation and discussion of the available literature and presents topics for future research. Rev. Biol. Trop. 65 (1): 375-392. Epub 2017 March 01.

ResumenTrabajos previos han destacado el papel fundamental de la productividad y dinámica de las macroalgas en el mantenimiento y estructuración de las cadenas alimentarias marinas. La variabilidad espacio temporal de las macroalgas puede alterar ecosistemas costeros, particularmente visibles a lo largo del perfil costero en zonas de proliferación. Como resultado de su ubicación ecuatorial y riqueza en nutrientes, además de eventos de proliferación, el Archipiélago de Galápagos en el Pacífico Oriental acoge un productivo y biodiverso ecosistema marino. Informes y recolección de macroalgas se remontan desde el viaje del Beagle, y desde entonces se han informado más de trescientas especies. No obstante, su función ecológica en el ecosistema no ha sido bien comprendida. Según diversas fuentes de información y en parte anecdóticas, existen abundantes y diversas comunidades de macroalgas en las regiones occidentales del archipiélago, el norte es sustancialmente estéril, y en el centro/sur la abundancia y distribución es variable y menos definida. Tanto las condiciones oceanográficas y la influencia de herbívoros han sido teorizadas para causar este patrón. Grandes cambios en la composición de la productividad y comunidad de macroalgas se han producido durante eventos ENOS fuertes y subsecuentemente han provocado la disminución de poblaciones de iguana marina (herbívoro endémico e icónico) y han sido vinculados a estos cambios. Las iguanas marinas son sólo una de las especies de un grupo diverso y abundante de herbívoros marinos en el sistema, destacando potencialmente el importante rol de la productividad de macroalgas en la cadena alimentaria marina. Esta revisión representa una primera recopilación y análisis de la literatura disponible y presenta temas para futuras investigaciones.