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1.
PLoS One ; 9(3): e91872, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24670408

RESUMO

Short-chain aliphatic esters are small volatile molecules that produce fruity and pleasant aromas and flavors. Most of these esters are artificially produced or extracted from natural sources at high cost. It is, however, possible to 'naturally' produce these molecules using biocatalysts such as lipases and esterases. A gene coding for a newly uncovered lipase was isolated from a previous metagenomic study and cloned into E. coli BL21 (DE3) for overexpression using the pET16b plasmid. Using this recombinant strain as a whole-cell biocatalyst, short chain esters were efficiently synthesized by transesterification and esterification reactions in organic media. The recombinant lipase (LipIAF5-2) showed good affinity toward glyceryl trioctanoate and the highest conversion yields were obtained for the transesterification of glyceryl triacetate with methanol. Using a simple cetyl-trimethylammonium bromide pretreatment increased the synthetic activity by a six-fold factor and the whole-cell biocatalyst showed the highest activity at 40°C with a relatively high water content of 10% (w/w). The whole-cell biocatalyst showed excellent tolerance to alcohol and short-chain fatty acid denaturation. Substrate affinity was equally effective with all primary alcohols tested as acyl acceptors, with a slight preference for methanol. The best transesterification conversion of 50 mmol glyceryl triacetate into isoamyl acetate (banana fragrance) provided near 100% yield after 24 hours using 10% biocatalyst loading (w/w) in a fluidized bed reactor, allowing recycling of the biocatalyst up to five times. These results show promising potential for an industrial approach aimed at the biosynthesis of short-chain esters, namely for natural flavor and fragrance production in micro-aqueous media.


Assuntos
Biocatálise/efeitos dos fármacos , Meios de Cultura/farmacologia , Escherichia coli/citologia , Ésteres/metabolismo , Lipase/metabolismo , Compostos Orgânicos/química , Paladar , Técnicas de Cultura Celular por Lotes , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Esterificação/efeitos dos fármacos , Cinética , Lipase/isolamento & purificação , Metanol/química , Pentanóis/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Solventes , Temperatura , Fatores de Tempo , Triglicerídeos/metabolismo , Água/química
2.
Biochemistry ; 53(11): 1789-800, 2014 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-24559145

RESUMO

ß-N-acetylhexosaminidases (HEX) are glycosidases that catalyze the glycosidic linkage hydrolysis of gluco- and galacto-configured N-acetyl-ß-d-hexosaminides. These enzymes are important in human physiology and are candidates for the biocatalytic production of carbohydrates and glycomimetics. In this study, the three-dimensional structure of the wild-type and catalytically impaired E302Q HEX variant from the soil bacterium Streptomyces coelicolor A3(2) (ScHEX) were solved in ligand-free forms and in the presence of 6-acetamido-6-deoxy-castanospermine (6-Ac-Cas). The E302Q variant was also trapped as an intermediate with oxazoline bound to the active center. Crystallographic evidence highlights structural variations in the loop 3 environment, suggesting conformational heterogeneity for important active-site residues of this GH20 family member. The enzyme was investigated for its ß-N-acetylhexosaminidase activity toward chitooligomers and pNP-acetyl gluco- and galacto-configured N-acetyl hexosaminides. Kinetic analyses confirm the ß(1-4) glycosidic linkage substrate preference, and HPLC profiles support an exoglycosidase mechanism, where the enzyme cleaves sugars from the nonreducing end of substrates. ScHEX possesses significant activity toward chitooligosaccharides of varying degrees of polymerization, and the final hydrolytic reaction yielded pure GlcNAc without any byproduct, promising high applicability for the enzymatic production of this highly valued chemical. Thermostability and activation assays further suggest efficient conditions applicable to the enzymatic production of GlcNAc from chitooligomers.


Assuntos
Streptomyces coelicolor/enzimologia , beta-N-Acetil-Hexosaminidases/química , beta-N-Acetil-Hexosaminidases/metabolismo , Catálise , Domínio Catalítico/genética , Cristalografia por Raios X , Ativação Enzimática/genética , Variação Genética , Humanos , Streptomyces coelicolor/genética , Streptomyces lividans/enzimologia , Relação Estrutura-Atividade , beta-N-Acetil-Hexosaminidases/genética
3.
Int J Radiat Biol ; 90(3): 268-73, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24168176

RESUMO

PURPOSE: The expression levels of seven genes (clpB, dnaK, groES, grpE, htpG, htpX and ibpB) encoding heat shock proteins (HSP) in Escherichia coli O157:H7 (E. coli) gamma irradiated was investigated. Timing impact of post-irradiated RNA extraction on the expression levels of these seven genes was also studied at a dose damaging the bacterial cells (0.4 kGy). METHODS: Bacterial samples were γ-irradiated at 0.4 kGy and at a lethal dose of 1.3 kGy. RNA was extracted at 0 min post irradiation for both irradiation doses and at 15, 30, 60, 90 or 120 min post-irradiation at the dose damaging the cells. Quantification of the gene expression was performed using quantitative real-time polymerase chain reaction (q-RT-PCR). RESULTS: The expression of genes encoding HSP was a very dynamic process evolving rapidly when E. coli cells were irradiated at 0.4 kGy. Notably, groES, grpE and ibpB were more up- regulated at 1.3 kGy than those at 0.4 kGy. CONCLUSIONS: For the seven genes studied there were more damaged proteins during irradiation at the lethal dose and this dose causes increased expression in HSP which contributes to damage reparation. Expression patterns of genes encoding HSP in E. coli treated by γ-irradiation are different from those treated by heat shock.


Assuntos
Escherichia coli O157/genética , Escherichia coli O157/efeitos da radiação , Irradiação de Alimentos , Raios gama , Regulação Bacteriana da Expressão Gênica/efeitos da radiação , Proteínas de Choque Térmico/metabolismo , Contagem de Colônia Microbiana , Primers do DNA/genética , Relação Dose-Resposta à Radiação , Proteínas de Escherichia coli/metabolismo , Microbiologia de Alimentos , Perfilação da Expressão Gênica , Reação em Cadeia da Polimerase em Tempo Real , Células-Tronco , Fatores de Tempo
4.
Can J Microbiol ; 58(10): 1221-9, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23072443

RESUMO

TerD-domain-encoding genes (tdd genes) are highly represented in the Streptomyces coelicolor genome. One of these, the tdd8 gene, was recently shown to have a crucial influence on growth, differentiation, and spore development of this filamentous bacterium. The investigation of the potential role of tdd genes has been extended here to tdd7 (SCO2367) and tdd13 (SCO4277). Both genes are highly expressed in bacteria grown in liquid-rich medium (tryptic soy broth). However, the deletion of these genes in S. coelicolor showed contrasting effects regarding developmental patterns, sporulation, and antibiotic production. Deletion of the tdd7 gene induced a reduction of growth in liquid medium, wrinkling of the mycelium on solid medium, and poor spore and actinorhodin production. On the other hand, deletion of the tdd13 gene did not significantly affect growth in liquid medium but induced a small colony phenotype on solid medium with abundant sporulation and overproduction of undecylprodigiosin. Although their exact functions remain undefined, the present data suggest a major involvement of TerD proteins in the proper development of S. coelicolor.


Assuntos
Deleção de Genes , Genes Bacterianos/genética , Streptomyces coelicolor/genética , Antraquinonas/metabolismo , Antibacterianos/biossíntese , Antibacterianos/metabolismo , Regulação Bacteriana da Expressão Gênica , Metais/farmacologia , Prodigiosina/análogos & derivados , Prodigiosina/biossíntese , Prodigiosina/metabolismo , Estrutura Terciária de Proteína , Esporos Bacterianos/fisiologia , Esporos Bacterianos/ultraestrutura , Streptomyces coelicolor/efeitos dos fármacos , Streptomyces coelicolor/crescimento & desenvolvimento , Streptomyces coelicolor/ultraestrutura
5.
PLoS One ; 7(3): e32488, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22427846

RESUMO

BACKGROUND: A capillary electrophoresis method using UV detection was developed to analyse protein composition of the lysates of two foodborne pathogens, Listeria monocytogenes and Staphylococcus aureus which were previously treated at different irradiation doses. METHODOLOGY AND PRINCIPAL FINDINGS: Bacterial samples were γ-irradiated at different doses to produce damage cells, to kill cells and to provoke viable but non culturable cells (VBNC) in order to evaluate the respective expression of stress proteins. In Listeria monocytogenes, two proteins (MW of 70.2 and 85.4 kDa) were significantly changed (P ≤ 0.05) at different doses of irradiation. In Staphyloccocus aureus, one protein (50 S ribosomal protein) with the MW of 16.3 kDa was significantly decreased at a low dose of irradiation treatment and the other protein (transcriptional regulator CtsR) with the MW of 17.7 kDa was increased significantly (P ≤ 0.05) at all doses of irradiation treatment compared to control. CONCLUSION: Expression of two proteins from the acyltransferase family in Listeria monocytogenes was statistically changed during irradiation treatment (P ≤ 0.05). In Staphylococcus aureus, expression of the 50 S ribosomal protein decreased and the transcriptional regulator CtsR espression increased significantly (P ≤ 0.05) following irradiation treatment. These expressed proteins do not belong to the well-known heat shock proteins family of Listeria monocytogenes and Staphylococcus aureus. The research further confirmed that capillary electrophoresis is a useful method to separate and analyse proteins expression which may be related to the resistance or sensitivity of food pathogens to γ-irradiation.


Assuntos
Proteínas de Bactérias/análise , Eletroforese Capilar/métodos , Raios gama , Listeria monocytogenes/química , Staphylococcus aureus/química , Listeria monocytogenes/efeitos da radiação , Staphylococcus aureus/efeitos da radiação
6.
PLoS One ; 7(3): e32041, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22396747

RESUMO

The genome sequence of Streptomyces coelicolor A3(2) contains more than 50 genes coding for putative lipolytic enzymes. Many studies have shown the capacity of this actinomycete to store important reserves of intracellular triacylglycerols in nutrient depletion situations. In the present study, we used genome mining of S. coelicolor to identify genes coding for putative, non-secreted esterases/lipases. Two genes were cloned and successfully overexpressed in E. coli as His-tagged fusion proteins. One of the recombinant enzymes, EstC, showed interesting cold-active esterase activity with a strong potential for the production of valuable esters. The purified enzyme displayed optimal activity at 35°C and was cold-active with retention of 25% relative activity at 10°C. Its optimal pH was 8.5-9 but the enzyme kept more than 75% of its maximal activity between pH 7.5 and 10. EstC also showed remarkable tolerance over a wide range of pH values, retaining almost full residual activity between pH 6-11. The enzyme was active toward short-chain p-nitrophenyl esters (C2-C12), displaying optimal activity with the valerate (C5) ester (k(cat)/K(m) = 737±77 s(-1) mM(-1)). The enzyme was also very active toward short chain triglycerides such as triacetin (C2:0) and tributyrin (C4:0), in addition to showing good primary alcohol and organic solvent tolerance, suggesting it could function as an interesting candidate for organic synthesis of short-chain esters such as flavors.


Assuntos
Hidrolases de Éster Carboxílico/química , Esterases/química , Streptomyces coelicolor/metabolismo , Sequência de Aminoácidos , Hidrolases de Éster Carboxílico/genética , Temperatura Baixa , Escherichia coli/enzimologia , Escherichia coli/metabolismo , Ésteres , Genes Bacterianos , Concentração de Íons de Hidrogênio , Lipase/química , Espectrometria de Massas/métodos , Dados de Sequência Molecular , Plasmídeos/metabolismo , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Temperatura
7.
Antonie Van Leeuwenhoek ; 100(3): 385-98, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21638113

RESUMO

The Streptomyces coelicolor genome contains 17 TerD domain-encoding genes (tdd genes) of unknown function. The proteins encoded by these genes have been presumed to be involved in tellurite resistance on the basis of their homology with the protein TerD of Serratia marcescens. To elucidate the role of a Tdd protein (Tdd8), both a deletion mutant for the corresponding gene tdd8 (SCO2368) and a recombinant strain over-expressing tdd8 were produced in S. coelicolor M145. The deletion mutant (Δtdd8), like the wild strain, was not resistant to potassium tellurite. The deletion was not lethal but had a marked effect on differentiation. The deletion strain showed more rapid growth in liquid medium and produced long chains of short spores with a dense and non-spherical spore wall on agar plates. The strain over-expressing tdd8 had a growth delay in liquid medium and produced very few spores of irregular shapes and sizes on solid medium. The results of this study demonstrated that Tdd proteins might have a function other than tellurite resistance and this function seems to be of crucial importance for the proper development of the actinomycete S. coelicolor.


Assuntos
Proteínas de Bactérias/metabolismo , Streptomyces coelicolor/crescimento & desenvolvimento , Streptomyces coelicolor/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica , Regulação da Expressão Gênica no Desenvolvimento , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Esporos Bacterianos/química , Esporos Bacterianos/genética , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/metabolismo , Streptomyces coelicolor/química , Streptomyces coelicolor/metabolismo
8.
J Ind Microbiol Biotechnol ; 38(9): 1321-8, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21108039

RESUMO

The metagenomic approach has greatly accelerated the discovery of new enzymes by giving access to the genetic potential of microorganisms from various environments. Function-based screening depends on adequate expression of the foreign genes in the heterologous host, which can be challenging in large-insert libraries. In this study, the shuttle cosmid vector pFX583 was used for the construction and screening of a metagenomic library. This vector allows T7 RNA polymerase-directed transcription of the cloned DNA and can be used in Escherichia coli and Streptomyces lividans. The DNA used for the library construction was obtained from an enriched biomass. The library was screened for lipolytic and proteolytic activities using E. coli and S. lividans as hosts. Numerous E. coli clones with lipolytic activity were detected. Unfortunately, proteases could not be detected in both hosts. From the lipolytic activity screen, a gene coding for a new lipase was isolated, and partial characterization was conducted.


Assuntos
Cosmídeos , RNA Polimerases Dirigidas por DNA , Biblioteca Genômica , Metagenômica , Proteínas Virais , Sequência de Aminoácidos , Clonagem Molecular , Escherichia coli/enzimologia , Escherichia coli/genética , Ensaios de Triagem em Larga Escala , Lipase/química , Lipase/genética , Dados de Sequência Molecular , Streptomyces lividans/enzimologia , Streptomyces lividans/genética
9.
J Ind Microbiol Biotechnol ; 37(9): 883-91, 2010 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-20495942

RESUMO

Seven lipolytic genes were isolated and sequenced from a metagenomic library that was constructed following biomass enrichment in a fed-batch bioreactor submitted to high temperature (50-70 degrees C) and alkaline pH (7-8.5). Among those sequences, lipIAF1-6 was chosen for further study and cloned in Streptomyces lividans 10-164. The G+C content within the sequence was 64.3%. The encoded protein, LipIAF1-6, was related to various putative lipases previously identified in different genome sequences. Homology of LipIAF-6 with the different lipases did not exceed 31%. The optimum pH (8.5) and temperature (60 degrees C) of the purified enzyme were in agreement with the enrichment conditions. Furthermore, the enzyme was thermostable for as long as 30 min at 70 degrees C. The maximum activity of the purified lipase was 4,287 IU/mg towards p-nitrophenyl (p-NP) butyrate (60 degrees C; pH 8.5). LipIAF1-6 does not seem to need the presence of metal ions for its activity. The enzyme was slightly inhibited by 10 mM CoCl2 (14%), HgCl2 (12%), and dithiothreitol (DTT) (15%). The serine protease inhibitor phenylmethylsulphonyl fluoride (PMSF) reduced activity by 39% and 71% when incubated at concentrations of 1 and 10 mM, respectively. Finally, LipIAF1-6 was stable in different organic solvents, and against several surfactants and oxidative agents commonly found in detergent formulations. These results are quite encouraging for further use of this enzyme in different industrial processes.


Assuntos
Proteínas de Bactérias/biossíntese , Temperatura Alta , Lipase/biossíntese , Metagenômica , Streptomyces lividans/genética , Álcalis/química , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Composição de Bases , Clonagem Molecular , Estabilidade Enzimática , Genes Bacterianos , Lipase/química , Lipase/genética , Dados de Sequência Molecular , Alinhamento de Sequência , Streptomyces lividans/enzimologia , Especificidade por Substrato
11.
J Ind Microbiol Biotechnol ; 36(6): 853-61, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19333634

RESUMO

The construction of a cosmid library from the biomass produced in an enriched Sequencing Fed-Batch Reactor allowed the isolation of a new lipase by functional screening. The open reading frame of 928 bp encoded a polypeptide of 308 amino acids with a molecular mass of 32.6 kDa. The amino acid sequence analysis revealed the presence of the conserved pentapeptide GXSXG essential for lipase activity. Alignment with known sequences of proteins showed no more than 52% identity with different lipases, confirming the discovery of a novel gene sequence. The lipase was cloned and expressed in Streptomyces lividans and further purified by a combination of hydrophobic interaction and size-exclusion chromatography. Spectrophotometric assays with different p-nitrophenyl esters demonstrated a preference for long-length acyl chains, especially p-nitrophenylmyristate (C14). Moreover, the enzyme presented an optimal activity at 60 degrees C and at alkaline pH of 10.5.


Assuntos
Bactérias/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Biblioteca Genômica , Lipase/química , Lipase/isolamento & purificação , Sequência de Aminoácidos , Bactérias/química , Bactérias/classificação , Bactérias/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Clonagem Molecular , Estabilidade Enzimática , Genoma Bacteriano , Lipase/genética , Lipase/metabolismo , Dados de Sequência Molecular , Fases de Leitura Aberta , Alinhamento de Sequência , Streptomyces lividans/genética , Streptomyces lividans/metabolismo , Temperatura
12.
J Food Sci ; 74(9): M499-508, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-20492121

RESUMO

The study was carried out to evaluate the effects of gamma-irradiation alone or in combination with oregano essential oil on murein composition of Staphylococcus aureus and on the intracellular and extracellular concentration of ATP. The bacterial strain was treated with 3 irradiation doses: 1.2 kGy to induce cell damage, 2.9 kGy to obtain a viable but nonculturable state, and 3.5 kGy to cause cell death. Oregano essential oil was used at 0.010% and 0.013% (w/v), which is the minimum inhibitory concentration (MIC). All treatments had a significant effect (P < or = 0.05) on the murein composition, although some muropeptides did not seem to be affected by the treatment. Each treatment influenced differently the relative percentage and number of muropeptides. There was a significant (P < or = 0.05) correlation between the reduction of intracellular ATP and increase in extracellular ATP following treatment of the cells with oregano oil. The reduction of intracellular ATP was even more important when essential oil was combined with irradiation. Also, irradiation alone of S. aureus induced a significant decrease (P < or = 0.05) of the internal ATP and a significant increase (P < or = 0.05) of the external ATP. However, no significant difference (P > 0.05) was observed in ATP concentrations between different radiation doses. Transmission electron microscopic observation revealed that oregano oil and irradiation have an effect on cell wall structure.


Assuntos
Trifosfato de Adenosina/metabolismo , Raios gama , Óleos Voláteis/farmacologia , Origanum/química , Peptidoglicano/metabolismo , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/efeitos da radiação , Parede Celular/efeitos dos fármacos , Parede Celular/efeitos da radiação , Parede Celular/ultraestrutura , Cromatografia Líquida de Alta Pressão , Relação Dose-Resposta a Droga , Relação Dose-Resposta à Radiação , Conservação de Alimentos/métodos , Doenças Transmitidas por Alimentos/prevenção & controle , Testes de Sensibilidade Microbiana , Viabilidade Microbiana/efeitos da radiação , Microscopia Eletrônica de Transmissão , Peptidoglicano/isolamento & purificação , Staphylococcus aureus/metabolismo , Staphylococcus aureus/ultraestrutura
13.
J Ind Microbiol Biotechnol ; 35(10): 1123-9, 2008 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-18633657

RESUMO

Colored wastewater from textile industries is a consequence of dye manufacturing processes. Two percent of dyes that are produced are discharged directly in aqueous effluent and more than 10% are subsequently lost during the textile coloration process. It is not surprising that these compounds have become a major environmental concern. In that context, we have evaluated the potential use of Streptomyces coelicolor laccase for decolourization of various dyes with and without a mediator. Results showed that in all cases the combination of laccase and the mediator acetosyringone was able to rapidly decolourize, to various degrees, all the dyes tested. In 10 min, decolourization was achieved at 94% for acid blue 74, 91% for direct sky blue 6b and 65% for reactive black 5. Furthermore, decolourization was achieved at 21% for reactive blue 19 and at 39% for the direct dye Congo red in 60 min. These results demonstrate the potential use of this laccase in combination with acetosyringone, a natural mediator, for dye decolourization.


Assuntos
Álcalis/metabolismo , Proteínas de Bactérias/metabolismo , Corantes/metabolismo , Lacase/metabolismo , Streptomyces coelicolor/enzimologia , Indústria Têxtil , Resíduos Industriais/análise
14.
Appl Microbiol Biotechnol ; 79(4): 597-603, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18437373

RESUMO

The lack of a commercially available robust and inexpensive laccase is a major barrier to the widespread application of this enzyme in various industrial sectors. By using an efficient system developed in Streptomyces lividans, we have produced by homologous expression 350 mg L(-1) of a bacterial laccase with a high purity and without any extensive purification. This is the highest production yield reported in the literature for a bacterial laccase. The secreted enzyme achieved oxidation under a wide pH range depending on the substrate: 4.0 for 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) and 9.0 for 2,6-dimethoxyphenol. Furthermore, this bacterial laccase was found to be quite resistant under various conditions. It withstands pH from 3.0 to 9.0, shows a great thermostability at 70 degrees C and was highly resistant toward conventional inhibitors. For instance, while the laccase of Trametes versicolor was completely inhibited by 1 mM NaN(3), the laccase of Streptomyces coelicolor was fully active under the same conditions. To assess application potential of this laccase, we have investigated its ability to decolourise Indigo carmine. This enzyme was able to rapidly decolourise the dye in the presence of syringaldehyde as a redox mediator.


Assuntos
Clonagem Molecular , Corantes/metabolismo , Expressão Gênica , Indóis/metabolismo , Microbiologia Industrial , Lacase/química , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Estabilidade Enzimática , Índigo Carmim , Lacase/genética , Lacase/metabolismo , Streptomyces lividans/genética , Streptomyces lividans/metabolismo , Temperatura
15.
Appl Environ Microbiol ; 74(7): 1997-2003, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18245231

RESUMO

This study demonstrated the capacity of bacteriocin-producing lactic acid bacteria (LAB) to reduce intestinal colonization by vancomycin-resistant enterococci (VRE) in a mouse model. Lactococcus lactis MM19 and Pediococcus acidilactici MM33 are bacteriocin producers isolated from human feces. The bacteriocin secreted by P. acidilactici is identical to pediocin PA-1/AcH, while PCR analysis demonstrated that L. lactis harbors the nisin Z gene. LAB were acid and bile tolerant when assayed under simulated gastrointestinal conditions. A well diffusion assay using supernatants from LAB demonstrated strong activity against a clinical isolate of VRE. A first in vivo study was done using C57BL/6 mice that received daily intragastric doses of L. lactis MM19, P. acidilactici MM33, P. acidilactici MM33A (a pediocin mutant that had lost its ability to produce pediocin), or phosphate-buffered saline (PBS) for 18 days. This study showed that L. lactis and P. acidilactici MM33A increased the concentrations of total LAB and anaerobes while P. acidilactici MM33 decreased the Enterobacteriaceae populations. A second in vivo study was done using VRE-colonized mice that received the same inocula as those in the previous study for 16 days. In L. lactis-fed mice, fecal VRE levels 1.73 and 2.50 log(10) CFU/g lower than those in the PBS group were observed at 1 and 3 days postinfection. In the P. acidilactici MM33-fed mice, no reduction was observed at 1 day postinfection but a reduction of 1.85 log(10) CFU/g was measured at 3 days postinfection. Levels of VRE in both groups of mice treated with bacteriocin-producing LAB were undetectable at 6 days postinfection. No significant difference in mice fed the pediocin-negative strain compared to the control group was observed. This is the first demonstration that human L. lactis and P. acidilactici nisin- and pediocin-producing strains can reduce VRE intestinal colonization.


Assuntos
Bacteriocinas/genética , Enterococcus/fisiologia , Intestinos/microbiologia , Lactobacillaceae/metabolismo , Nisina/biossíntese , Resistência a Vancomicina , Animais , Antibacterianos/farmacologia , Antibiose , Bacteriocinas/metabolismo , Bacteriocinas/farmacologia , Enterococcus/efeitos dos fármacos , Humanos , Lactobacillaceae/genética , Lactobacillaceae/fisiologia , Camundongos , Nisina/farmacologia , Pediococcus/metabolismo
16.
Talanta ; 71(5): 1969-75, 2007 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-19071550

RESUMO

A radiation tolerance strain, Pantoea agglomerans was isolated from gamma-irradiated carrot samples (Daucus carota). D(10) determination showed that the radioresistance of this bacterium is five-fold higher than Escherichia coli, both belonging to the family of Enterobacteriaceae. DNA isolated from untreated and irradiated bacterial cells was analyzed by FT-IR spectroscopy to investigate the radiotolerance of this bacterium. At doses <5kGy, an alteration of the interbase hydrogen networks was observed and characterized mainly by an increase of bands assigned to the carbonyl non-pairing and the free amine groups. Moderate breakage of the DNA backbone and damage of the osidic structure were also observed. Similar spectral profiles were noticed at doses > or =5kGy, but additional increase of the band intensity of C=C and C=N suggests damages of nucleobases. High number of asymmetric PO(2)(-) and upper shift of symmetric PO(2)(-) are indicative of DNA strand breaks. Osidic damages were evidenced by decrease of the absorption bands ascribed to deoxyribosyl moieties and by appearance of C-OH band. DNA degradation at high irradiation doses was also noticed by electrophoresis using agarose gel. It appeared that DNA underwent covalent cross-linking, as revealed by agglomeration of DNA in the wells of agarose gel.

17.
J Biol Chem ; 281(16): 10968-75, 2006 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-16431911

RESUMO

The enzymatic degradation of plant cell wall xylan requires the concerted action of a diverse enzymatic syndicate. Among these enzymes are xylan esterases, which hydrolyze the O-acetyl substituents, primarily at the O-2 position of the xylan backbone. All acetylxylan esterase structures described previously display a alpha/beta hydrolase fold with a "Ser-His-Asp" catalytic triad. Here we report the structures of two distinct acetylxylan esterases, those from Streptomyces lividans and Clostridium thermocellum, in native and complex forms, with x-ray data to between 1.6 and 1.0 A resolution. We show, using a novel linked assay system with PNP-2-O-acetylxyloside and a beta-xylosidase, that the enzymes are sugar-specific and metal ion-dependent and possess a single metal center with a chemical preference for Co2+. Asp and His side chains complete the catalytic machinery. Different metal ion preferences for the two enzymes may reflect the surprising diversity with which the metal ion coordinates residues and ligands in the active center environment of the S. lividans and C. thermocellum enzymes. These "CE4" esterases involved in plant cell wall degradation are shown to be closely related to the de-N-acetylases involved in chitin and peptidoglycan degradation (Blair, D. E., Schuettelkopf, A. W., MacRae, J. I., and Aalten, D. M. (2005) Proc. Natl. Acad. Sci. U. S. A., 102, 15429-15434), which form the NodB deacetylase "superfamily."


Assuntos
Acetilesterase/química , Amidoidrolases/química , Parede Celular/metabolismo , Peptidoglicano/química , Ácido Aspártico/química , Sítios de Ligação , Metabolismo dos Carboidratos , Carboidratos/química , Catálise , Quitina/química , Clostridium thermocellum/metabolismo , Cobalto/química , Cristalografia por Raios X , Dimerização , Escherichia coli/metabolismo , Histidina/química , Íons , Ligantes , Metais/química , Modelos Químicos , Modelos Moleculares , Modelos Estatísticos , Níquel/química , Plantas/metabolismo , Conformação Proteica , Estrutura Terciária de Proteína , Streptomyces lividans/metabolismo , Relação Estrutura-Atividade , Xilanos/química
18.
Biochim Biophys Acta ; 1764(2): 263-74, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16434244

RESUMO

Multiple sequence alignment of Streptomyces lividans acetylxylan esterase A and other carbohydrate esterase family 4 enzymes revealed the following conserved amino acid residues: Asp-12, Asp-13, His-62, His-66, Asp-130, and His-155. These amino acids were mutated in order to investigate a functional role of these residues in catalysis. Replacement of the conserved histidine residues by alanine caused significant reduction of enzymatic activity. Maintenance of ionizable carboxylic group in side chains of amino acids at positions 12, 13, and 130 seems to be necessary for catalytic efficiency. The absence of conserved serine excludes a possibility that the enzyme is a serine esterase, in contrast to acetylxylan esterases of carbohydrate esterase families 1, 5, and 7. On the contrary, total conservation of Asp-12, Asp-13, Asp-130, and His-155 along with dramatic decrease in enzyme activity of mutants of either of these residues lead us to a suggestion that acetylxylan esterase A from Streptomyces lividans and, by inference, other members of carbohydrate esterase family 4 are aspartic deacetylases. We propose that one component of the aspartate dyad/triad functions as a catalytic nucleophile and the other one(s) as a catalytic acid/base. The ester/amide bond cleavage would proceed via a double displacement mechanism through covalently linked acetyl-enzyme intermediate of mixed anhydride type.


Assuntos
Acetilesterase/química , Proteínas de Bactérias/química , Domínio Catalítico/genética , Streptomyces lividans/enzimologia , Acetilesterase/genética , Acetilesterase/isolamento & purificação , Motivos de Aminoácidos , Sequência de Aminoácidos , Asparagina/química , Asparagina/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Catálise , Sequência Conservada , Histidina/química , Histidina/genética , Dados de Sequência Molecular , Mutação , Conformação Proteica
19.
Protein Expr Purif ; 46(2): 274-84, 2006 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16256365

RESUMO

Acetyl xylan esterase A (AxeA) from Streptomyces lividans belongs to a large family of industrially relevant polysaccharide esterases. AxeA and its truncated form containing only the catalytically competent domain, AxeA(tr), catalyze both the deacetylation of xylan and the N-deacetylation of chitosan. This broad substrate specificity lends additional interest to their characterization and production. Here, we report three systems for extracellular production of AxeA(tr): secretion from the native host S. lividans with the native signal peptide, extracellular production in Escherichia coli with the native signal peptide, and in E. coli with the OmpA signal peptide. Over five to seven days of a shake flask culture, the native host S. lividans with the native signal peptide secreted AxeA(tr) into the extracellular medium in high yield (388 mg/L) with specific activity of 19 U/mg corresponding to a total of 7000 U/L. Over one day of shake flask culture, E. coli with the native secretion signal peptide produced 84-fold less in the extracellular medium (4.6 mg/L), but the specific activity was higher (100 U/mg) corresponding to a total of 460 U/L. A similar E. coli culture using the OmpA signal peptide, produced 10mg/L with a specific activity of 68 U/mg, corresponding to a total of 680 U/L. In 96-well microtiter plates, extracellular production with E. coli gave approximately 30 and approximately 86 microg/mL in S. lividans. Expression in S. lividans with the native signal peptide is best for high level production, while expression in E. coli using the OmpA secretion signal peptide is best for high-throughput expression and screening of variants in microtiter plate format.


Assuntos
Acetilesterase/biossíntese , Proteínas de Bactérias/biossíntese , Escherichia coli , Proteínas Recombinantes/biossíntese , Streptomyces lividans/enzimologia , Acetilesterase/química , Acetilesterase/genética , Sequência de Aminoácidos , Proteínas da Membrana Bacteriana Externa/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Expressão Gênica/genética , Sinais Direcionadores de Proteínas/genética , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Deleção de Sequência , Streptomyces lividans/genética
20.
J Food Prot ; 68(12): 2571-9, 2005 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-16355828

RESUMO

This study was carried out to evaluate the effects of gamma radiation alone or in combination with oregano essential oil on the murein composition of Escherichia coli O157:H7 and on the intracellular and extracellular concentrations of ATP. The bacterial strain was treated with three radiation doses: 0.4 kGy to induce cell damage, 1.1 kGy to obtain a viable but non-culturable state, and 1.3 kGy to cause cell death. Oregano essential oil was used at 0.006 and 0.025% (wt/vol), which is the MIC. All treatments had a significant effect (P < or = 0.05) on the murein composition, although some muropeptides did not seem to be affected by the treatment. Each treatment had a different effect on the relative percentage and number of muropeptides. There was a significant correlation (P < or = 0.05) between the decrease in intracellular ATP and the increase in extracellular ATP following treatment of the cells with oregano oil. The reduction of intracellular ATP was even more important when oregano oil was combined with irradiation, but irradiation alone at a high dose (< or = 1.1 kGy) significantly decreased (P < or = 0.05) the internal ATP without affecting the external ATP. Transmission electron microscopic examination revealed that oregano oil and irradiation have an effect on cell wall structure.


Assuntos
Trifosfato de Adenosina/metabolismo , Escherichia coli O157 , Irradiação de Alimentos , Origanum/fisiologia , Peptidoglicano/metabolismo , Cromatografia Líquida de Alta Pressão , Contagem de Colônia Microbiana , Relação Dose-Resposta à Radiação , Escherichia coli O157/efeitos dos fármacos , Escherichia coli O157/crescimento & desenvolvimento , Escherichia coli O157/metabolismo , Escherichia coli O157/efeitos da radiação , Escherichia coli O157/ultraestrutura , Microbiologia de Alimentos , Raios gama , Testes de Sensibilidade Microbiana , Microscopia Eletrônica de Transmissão , Óleos Voláteis/farmacologia
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