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1.
Methods Mol Biol ; 2442: 233-245, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35320530

RESUMO

A multi-specific fungal galectin from the mushroom Agrocybe cylindracea (ACG) binds a broad range of ß-galactosides, as well as their derivative GalNAcα1-3Gal. Site-directed mutagenesis of the hydrophilic residues His, Asn, Arg, and Glu, involved in carbohydrate recognition, abolished the binding affinity of the derived mutants to ß-galactosides, whereas only N46A caused increased affinity to GalNAcα1-3Gal-containing oligosaccharides and loss of ß-galactoside-binding activity. Detailed structural analysis revealed that Pro45, the preceding residue of Asn46 of the wild-type ACG, takes the cis imide conformation to tether Asn46 onto a loop region to make new hydrogen bonds with ß-galactosides and to compensate for the lack of evolutionarily conserved Asn. In contrast, in the N46A mutant, Pro45 takes the more stable trans conformation, resulting in "switched" specificity to αGalNAc. Such an altered recognition system in the binding specificity of galectins can be observed in other lectin molecules not only in nature but will also be observed in those engineered in the future.


Assuntos
Agrocybe , Agrocybe/genética , Agrocybe/metabolismo , Galectinas/metabolismo
2.
Microbiologyopen ; 10(6): e1229, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34964294

RESUMO

The filamentous fungus Magnaporthe oryzae has the potential to be developed as an alternative platform organism for the heterologous production of industrially important enzymes. M. oryzae is easy to handle, fast-growing and unlike yeast, posttranslational modifications like N-glycosylations are similar to the human organism. Here, we established M. oryzae as a host for the expression of the unspecific peroxygenase from the basidiomycete Agrocybe aegerita (AaeUPO). Note, UPOs are attractive biocatalysts for selective oxyfunctionalization of non-activated carbon-hydrogen bonds. To improve and simplify the isolation of AaeUPO in M. oryzae, we fused a Magnaporthe signal peptide for protein secretion and set it under control of the strong EF1α-promoter. The success of the heterologous production of full-length AaeUPO in M. oryzae and the secretion of the functional enzyme was confirmed by a peroxygenase-specific enzyme assay. These results offer the possibility to establish the filamentous ascomycete M. oryzae as a broad applicable alternative expression system.


Assuntos
Agrocybe/enzimologia , Magnaporthe/genética , Oxigenases de Função Mista/biossíntese , Agrocybe/genética , Fator de Iniciação 1 em Eucariotos/genética , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/genética , Magnaporthe/metabolismo , Oxigenases de Função Mista/genética , Regiões Promotoras Genéticas , Sinais Direcionadores de Proteínas/genética , Proteínas Recombinantes/biossíntese
3.
Biotechnol Bioeng ; 118(8): 3002-3014, 2021 08.
Artigo em Inglês | MEDLINE | ID: mdl-33964174

RESUMO

Fungal unspecific peroxygenases (UPOs) are efficient biocatalysts that insert oxygen atoms into nonactivated C-H bonds with high selectivity. Many oxyfunctionalization reactions catalyzed by UPOs are favored in organic solvents, a milieu in which their enzymatic activity is drastically reduced. Using as departure point the UPO secretion mutant from Agrocybe aegerita (PaDa-I variant), in the current study we have improved its activity in organic solvents by directed evolution. Mutant libraries constructed by random mutagenesis and in vivo DNA shuffling were screened in the presence of increasing concentrations of organic solvents that differed both in regard to their chemical nature and polarity. In addition, a palette of neutral mutations generated by genetic drift that improved activity in organic solvents was evaluated by site directed recombination in vivo. The final UPO variant of this evolutionary campaign carried nine mutations that enhanced its activity in the presence of 30% acetonitrile (vol/vol) up to 23-fold over PaDa-I parental type, and it was also active and stable in aqueous acetone, methanol and dimethyl sulfoxide mixtures. These mutations, which are located at the surface of the protein and in the heme channel, seemingly helped to protect UPO from harmful effects of cosolvents by modifying interactions with surrounding residues and influencing critical loops.


Assuntos
Agrocybe , Evolução Molecular Direcionada , Proteínas Fúngicas , Oxigenases de Função Mista , Mutação de Sentido Incorreto , Solventes/química , Acetona/química , Acetonitrilas/química , Agrocybe/enzimologia , Agrocybe/genética , Dimetil Sulfóxido/química , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Metanol/química , Oxigenases de Função Mista/química , Oxigenases de Função Mista/genética
4.
Int J Mol Sci ; 21(19)2020 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-32998313

RESUMO

The edible mushroom Agrocybe aegerita produces a ribotoxin-like protein known as Ageritin. In this work, the gene encoding Ageritin was characterized by sequence analysis. It contains several typical features of fungal genes such as three short introns (60, 55 and 69 bp) located at the 5' region of the coding sequence and typical splice junctions. This sequence codes for a precursor of 156 amino acids (~17-kDa) containing an additional N-terminal peptide of 21 amino acid residues, absent in the purified toxin (135 amino acid residues; ~15-kDa). The presence of 17-kDa and 15-kDa forms was investigated by Western blot in specific parts of fruiting body and in mycelia of A. aegerita. Data show that the 15-kDa Ageritin is the only form retrieved in the fruiting body and the principal form in mycelium. The immunolocalization by confocal laser scanning microscopy and transmission electron microscopy proves that Ageritin has vacuolar localization in hyphae. Coupling these data with a bioinformatics approach, we suggest that the N-terminal peptide of Ageritin (not found in the purified toxin) is a new signal peptide in fungi involved in intracellular routing from endoplasmic reticulum to vacuole, necessary for self-defense of A. aegerita ribosomes from Ageritin toxicity.


Assuntos
Agrocybe/genética , Citotoxinas/genética , Carpóforos/metabolismo , Proteínas Fúngicas/genética , Micélio/metabolismo , Ribonucleases/genética , Agrocybe/metabolismo , Agrocybe/ultraestrutura , Sequência de Aminoácidos , Biologia Computacional , Citotoxinas/biossíntese , Citotoxinas/isolamento & purificação , Retículo Endoplasmático/metabolismo , Retículo Endoplasmático/ultraestrutura , Éxons , Carpóforos/ultraestrutura , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/isolamento & purificação , Expressão Gênica , Íntrons , Micélio/ultraestrutura , Fases de Leitura Aberta , Sinais Direcionadores de Proteínas/genética , Transporte Proteico , Ribonucleases/biossíntese , Ribonucleases/isolamento & purificação , Ribossomos/genética , Ribossomos/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Vacúolos/metabolismo , Vacúolos/ultraestrutura
5.
Genomics Proteomics Bioinformatics ; 18(3): 341-351, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32561469

RESUMO

Agrocybe cylindracea, an edible mushroom, is widely cultivated for its abundance of nutrients and flavor, and many of its metabolites are reported to have beneficial roles, such as medicinal effects on tumors and chronical illnesses. However, the lack of genomic information has hindered further molecular studies on this fungus. Here, we present a genome assembly of A. cylindracea together with comparative genomics and pathway analyses of Agaricales species. The draft, generated from both next-generation sequencing (NGS) and single-molecule real-time (SMRT) sequencing platforms to overcome high genetic heterozygosity, is composed of a 56.5 Mb sequence and 15,384 predicted genes. This mushroom possesses a complex reproductive system, including tetrapolar heterothallic and secondary homothallic mechanisms, and harbors several hydrolases and peptidases for gradual and effective degradation of various carbon sources. Our pathway analysis reveals complex processes involved in the biosynthesis of polysaccharides and other active substances, including B vitamins, unsaturated fatty acids, and N-acetylglucosamine. RNA-seq data show that A. cylindracea stipes tend to synthesize carbohydrate for carbon sequestration and energy storage, whereas pilei are more active in carbon utilization and unsaturated fatty acid biosynthesis. These results reflect diverse functions of the two anatomical structures of the fruiting body. Our comprehensive genomic and transcriptomic data, as well as preliminary comparative analyses, provide insights into the molecular details of the medicinal effects in terms of active compounds and nutrient components.


Assuntos
Agrocybe/genética , Regulação Fúngica da Expressão Gênica , Genoma Fúngico , Genômica/métodos , Redes e Vias Metabólicas , Transcriptoma , Agrocybe/classificação , Agrocybe/metabolismo , Biologia Computacional , Sequenciamento de Nucleotídeos em Larga Escala , Sequenciamento Completo do Genoma
6.
ACS Chem Biol ; 15(5): 1268-1277, 2020 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-32233445

RESUMO

Terpenoids constitute a structurally diverse group of natural products with wide applications in the pharmaceutical, nutritional, flavor and fragrance industries. Fungi are known to produce a large variety of terpenoids, yet fungal terpene synthases remain largely unexploited. Here, we report the sesquiterpene network and gene clusters of the black poplar mushroom Agrocybe aegerita. Among 11 putative sesquiterpene synthases (STSs) identified in its genome, nine are functional, including two novel synthases producing viridiflorol and viridiflorene. On this basis, an additional 1133 STS homologues from higher fungi have been curated and used for a sequence similarity network to probe isofunctional STS groups. With the focus on two STS groups, one producing viridiflorene/viridiflorol and one Δ6-protoilludene, the isofunctionality was probed and verified. Three new Δ6-protoilludene synthases and two new viridflorene/viridiflorol synthases from five different fungi were correctly predicted. The study herein serves as a fundamental predictive framework for the discovery of fungal STSs and biosynthesis of novel terpenoids. Furthermore, it becomes clear that fungal STS function differs between the phyla Ascomycota and Basidiomycota with the latter phylum being more dominant in the overall number and variability. This study aims to encourage the scientific community to further work on fungal STS and the products, biological functions, and potential applications of this vast source of natural products.


Assuntos
Agrocybe/enzimologia , Alquil e Aril Transferases/metabolismo , Produtos Biológicos/química , Sesquiterpenos/química , Agrocybe/genética , Agrocybe/metabolismo , Alquil e Aril Transferases/genética , Sequência de Aminoácidos , Sequência de Bases , Basidiomycota/enzimologia , Basidiomycota/genética , Basidiomycota/metabolismo , Produtos Biológicos/metabolismo , Vias Biossintéticas , Clonagem Molecular , Escherichia coli/genética , Regulação Fúngica da Expressão Gênica , Genoma Fúngico , Estrutura Molecular , Família Multigênica , Homologia de Sequência do Ácido Nucleico , Sesquiterpenos/metabolismo
7.
Appl Environ Microbiol ; 85(21)2019 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-31444206

RESUMO

Fungi produce various defense proteins against antagonists, including ribotoxins. These toxins cleave a single phosphodiester bond within the universally conserved sarcin-ricin loop of ribosomes and inhibit protein biosynthesis. Here, we report on the structure and function of ageritin, a previously reported ribotoxin from the edible mushroom Agrocybe aegerita The amino acid sequence of ageritin was derived from cDNA isolated from the dikaryon A. aegerita AAE-3 and lacks, according to in silico prediction, a signal peptide for classical secretion, predicting a cytoplasmic localization of the protein. The calculated molecular weight of the protein is slightly higher than the one reported for native ageritin. The A. aegerita ageritin-encoding gene, AaeAGT1, is highly induced during fruiting, and toxicity assays with AaeAGT1 heterologously expressed in Escherichia coli showed a strong toxicity against Aedes aegypti larvae yet not against nematodes. The activity of recombinant A. aegerita ageritin toward rabbit ribosomes was confirmed in vitro Mutagenesis studies revealed a correlation between in vivo and in vitro activities, indicating that entomotoxicity is mediated by ribonucleolytic cleavage. The strong larvicidal activity of ageritin makes this protein a promising candidate for novel biopesticide development.IMPORTANCE Our results suggest a pronounced organismal specificity of a protein toxin with a very conserved intracellular molecular target. The molecular details of the toxin-target interaction will provide important insight into the mechanism of action of protein toxins and the ribosome. This insight might be exploited to develop novel bioinsecticides.


Assuntos
Agaricales/metabolismo , Agrocybe/metabolismo , Micotoxinas/metabolismo , Micotoxinas/toxicidade , Ribonucleases/metabolismo , Ribonucleases/toxicidade , Agaricales/genética , Agrocybe/genética , Sequência de Aminoácidos , Animais , Culicidae/efeitos dos fármacos , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Larva/efeitos dos fármacos , Mutagênese , Mutação , Micotoxinas/química , Micotoxinas/genética , Proteínas Recombinantes , Ribonucleases/química , Ribonucleases/genética , Ribossomos/efeitos dos fármacos , Células Sf9/efeitos dos fármacos
8.
Mol Genet Genomics ; 294(3): 663-677, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30778675

RESUMO

Agrocybe aegerita is a cultivated edible mushroom in numerous countries, which also serves as a model basidiomycete to study fruiting body formation. Aiming to create an easily expandable customised molecular toolset for transformation and constitutive gene of interest expression, we first created a homologous dominant marker for transformant selection. Progeny monokaryons of the genome-sequenced dikaryon A. aegerita AAE-3 used here were identified as sensitive to the systemic fungicide carboxin. We cloned the wild-type gene encoding the iron-sulphur protein subunit of succinate dehydrogenase AaeSdi1 including its up- and downstream regions, and introduced a single-point mutation (His237 to Leu) to make it confer carboxin resistance. PEG-mediated transformation of protoplasts derived from either oidia or vegetative monokaryotic mycelium with the resulting carboxin resistance marker (CbxR) plasmid pSDI1E3 yielded carboxin-resistant transformants in both cases. Plasmid DNA linearised within the selection marker resulted in transformants with ectopic multiple insertions of plasmid DNA in a head-to-tail repeat-like fashion. When circular plasmid was used, ectopic single integration into the fungal genome was favoured, but also gene conversion at the homologous locus was seen in 1 out of 11 analysed transformants. Employing CbxR as selection marker, two versions of a reporter gene construct were assembled via Golden Gate cloning which allows easy recombination of its modules. These consisted of an eGFP expression cassette controlled by the native promoter PAaeGPDII and the heterologous terminator Tnos, once with and once without an intron in front of the eGFP start codon. After protoplast transformation with either construct as circular plasmid DNA, GFP fluorescence was detected with either transformants, indicating that expression of eGFP is intron-independent in A. aegerita. This paves the way for functional genetics approaches to A. aegerita, e.g., via constitutive expression of fruiting-related genes.


Assuntos
Agaricales/genética , Agrocybe/genética , Regulação Fúngica da Expressão Gênica , Transformação Genética , Agaricales/efeitos dos fármacos , Agrocybe/efeitos dos fármacos , Carboxina/farmacologia , Farmacorresistência Fúngica/genética , Carpóforos/efeitos dos fármacos , Carpóforos/genética , Proteínas Fúngicas/genética , Fungicidas Industriais/farmacologia , Genoma Fúngico/genética , Íntrons/genética , Mutação , Micélio/efeitos dos fármacos , Micélio/genética , Plasmídeos/genética , Succinato Desidrogenase/genética
9.
Dev Comp Immunol ; 90: 1-9, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30031870

RESUMO

Lectin is a protein with multiple functions. In this study, the full-length cDNA of the Agrocybe aegerita lectin (AAL) gene was cloned, recombinant AAL (AAL-His) was expressed, and the activities of AAL-His were analyzed. Northern blot analysis showed that the major AAL transcript is approximately 900 bp. Sequence analysis showed that the coding region of AAL is 489 bp with a transcription start site located 39 nucleotides upstream of the translation initiation codon. In an agglutination test, AAL-His agglutinated rabbit erythrocytes at 12.5 µg/ml. AAL-His also showed antiviral activity in protecting shrimp from white spot syndrome virus (WSSV) infection. This anti-WSSV effect might be due to the binding of AAL-His on WSSV virions via the direct interactions with four WSSV structural proteins, VP39B, VP41B, VP53A and VP216. AAL demonstrates the potential for development as an anti-WSSV agent for shrimp culture. It also implies that these four AAL interaction WSSV proteins may play important roles in virus infection.


Assuntos
Agrocybe/genética , Antígenos de Fungos/genética , Infecções por Vírus de DNA/imunologia , Lectinas/genética , Penaeidae/imunologia , Transgenes/genética , Vírus da Síndrome da Mancha Branca 1/fisiologia , Animais , Antivirais/metabolismo , Clonagem Molecular , Agregação Eritrocítica , Imunidade Inata , Lectinas/metabolismo , Penaeidae/virologia , Ligação Proteica , Proteínas Virais/metabolismo
10.
BMC Genomics ; 19(1): 48, 2018 01 15.
Artigo em Inglês | MEDLINE | ID: mdl-29334897

RESUMO

BACKGROUND: Agrocybe aegerita is an agaricomycete fungus with typical mushroom features, which is commercially cultivated for its culinary use. In nature, it is a saprotrophic or facultative pathogenic fungus causing a white-rot of hardwood in forests of warm and mild climate. The ease of cultivation and fructification on solidified media as well as its archetypal mushroom fruit body morphology render A. aegerita a well-suited model for investigating mushroom developmental biology. RESULTS: Here, the genome of the species is reported and analysed with respect to carbohydrate active genes and genes known to play a role during fruit body formation. In terms of fruit body development, our analyses revealed a conserved repertoire of fruiting-related genes, which corresponds well to the archetypal fruit body morphology of this mushroom. For some genes involved in fruit body formation, paralogisation was observed, but not all fruit body maturation-associated genes known from other agaricomycetes seem to be conserved in the genome sequence of A. aegerita. In terms of lytic enzymes, our analyses suggest a versatile arsenal of biopolymer-degrading enzymes that likely account for the flexible life style of this species. Regarding the amount of genes encoding CAZymes relevant for lignin degradation, A. aegerita shows more similarity to white-rot fungi than to litter decomposers, including 18 genes coding for unspecific peroxygenases and three dye-decolourising peroxidase genes expanding its lignocellulolytic machinery. CONCLUSIONS: The genome resource will be useful for developing strategies towards genetic manipulation of A. aegerita, which will subsequently allow functional genetics approaches to elucidate fundamentals of fruiting and vegetative growth including lignocellulolysis.


Assuntos
Agrocybe/genética , Carpóforos/genética , Genoma Fúngico , Agrocybe/citologia , Agrocybe/enzimologia , Sequência de Aminoácidos , Biopolímeros/metabolismo , Sequência Conservada , Carpóforos/citologia , Genes Fúngicos , Genômica , Oxirredutases/genética
11.
Immunopharmacol Immunotoxicol ; 40(1): 6-12, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29077528

RESUMO

CONTEXT: Accumulated evidence has indicated that recombinant Agrocybe aegerita lectin (AAL) possesses immunoadjuvant activity to enhance antigen-specific immune responses. However, the mechanism of how AAL regulates immune response remains poorly defined. AIM: This study is aimed to reveal the mechanism of AAL's immunoadjuvant activity. METHODS: In this study, AAL alone or combined with inactivated avian influenza virus H9N2 was immunized to mice and the transcriptome profile of immunized mice was analyzed. RESULTS: In line with previous studies, our results showed that H9N2-specific IgG level was significantly increased in AAL-treated mice, suggesting the immunoadjuvant activity of AAL. More importantly, transcriptome data revealed that genes participating in the primary adherence, lymphocyte activation, secondary adherence and transmembrane migration of leukocyte migration, were up-regulated by AAL. CONCLUSION: These findings suggest that AAL exerts immunoadjuvant effects by promoting chemotaxis and phagotrophy activity of neutrophil leucocyte and macrophage to improve innate immunity and antigen presentation.


Assuntos
Adjuvantes Imunológicos/farmacologia , Agrocybe/química , Apresentação de Antígeno/efeitos dos fármacos , Proteínas Fúngicas/farmacologia , Imunidade Inata/efeitos dos fármacos , Vírus da Influenza A Subtipo H9N2/imunologia , Vacinas contra Influenza/farmacologia , Lectinas/farmacologia , Adjuvantes Imunológicos/química , Agrocybe/genética , Agrocybe/imunologia , Animais , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/imunologia , Vacinas contra Influenza/química , Vacinas contra Influenza/imunologia , Lectinas/química , Lectinas/genética , Lectinas/imunologia , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/imunologia , Proteínas Recombinantes/farmacologia
12.
Curr Microbiol ; 74(6): 772-778, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28393263

RESUMO

Agrocybe salicacola is a delicious and cultivable mushroom. It is important to understand this species' inherent characteristics, especially to elucidate the constitution and segregation of mating genes. In this study, two compatible B mating loci in strain YAASM0711 of A. salicacola were cloned from the monokaryons, and sequence and phylogeny analyses showed two conserved genes encoding pheromone receptors maybe lost mating activity, which determined by comparing with those of other mushrooms. In the conserved regions of mating loci, partial insertion/deletion fragments made non-coding regions posses polymorphisms, and monokaryotic strains of different mating types were distinguished from each other according to the amplification profile of variable regions, which suggested mating loci were integrally assigned to offspring strains during mitosis in A. salicacola. As our known, it is the first to develop molecular markers for B mating-type identification using variable non-coding fragments of mating loci in basidiomycetes.


Assuntos
Agrocybe/genética , Proteínas Fúngicas/genética , Genes Fúngicos Tipo Acasalamento/genética , RNA não Traduzido/genética , Receptores de Feromônios/genética , Agrocybe/classificação , Sequência de Bases , Clonagem Molecular , Sequência Conservada/genética , Filogenia , Polimorfismo Genético/genética , Alinhamento de Sequência , Análise de Sequência de DNA
13.
Protein Eng Des Sel ; 30(3): 189-196, 2017 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-28044007

RESUMO

Unspecific peroxygenase (UPO) is a heme-thiolate peroxidase capable of performing with high-selectivity C-H oxyfunctionalizations of great interest in organic synthesis through its peroxygenative activity. However, the convergence of such activity with an unwanted peroxidative activity encumbers practical applications. In this study, we have modified the peroxygenative:peroxidative activity ratio (P:p ratio) of UPO from Agrocybe aegerita by structure-guided evolution. Several flexible loops (Glu1-Pro35, Gly103-Asp131, Ser226-Gly243, Gln254-Thr276 and Ty293-Arg327) were selected on the basis on their B-factors and ΔΔG values. The full ensemble of segments (43% of UPO sequence) was subjected to focused evolution by the Mutagenic Organized Recombination Process by Homologous IN vivo Grouping (MORPHING) method in Saccharomyces cerevisiae. Five independent mutant libraries were screened in terms of P:p ratio and thermostability. We identified several variants that harbored substitutions at positions 120 and 320 with a strong enhancement in the P:p ratio albeit at the cost of stability. The most thermostable mutant of this process (S226G with an increased T50 of 2°C) was subjected to further combinatorial saturation mutagenesis on Thr120 and Thr320 yielding a collection of variants with modified P:p ratio and recovered stability. Our results seem to indicate the coexistence of several oxidation sites for peroxidative and peroxygenative activities in UPO.


Assuntos
Agrocybe , Evolução Molecular Direcionada , Proteínas Fúngicas , Oxigenases de Função Mista , Agrocybe/enzimologia , Agrocybe/genética , Estabilidade Enzimática , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Oxigenases de Função Mista/química , Oxigenases de Função Mista/genética , Domínios Proteicos , Estrutura Secundária de Proteína
14.
Chembiochem ; 17(4): 341-9, 2016 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-26677801

RESUMO

There is an increasing interest in enzymes that catalyze the hydroxylation of naphthalene under mild conditions and with minimal requirements. To address this challenge, an extracellular fungal aromatic peroxygenase with mono(per)oxygenase activity was engineered to convert naphthalene selectively into 1-naphthol. Mutant libraries constructed by random mutagenesis and DNA recombination were screened for peroxygenase activity on naphthalene together with quenching of the undesired peroxidative activity on 1-naphthol (one-electron oxidation). The resulting double mutant (G241D-R257K) obtained from this process was characterized biochemically and computationally. The conformational changes produced by directed evolution improved the substrate's catalytic position. Powered exclusively by catalytic concentrations of H2 O2 , this soluble and stable biocatalyst has a total turnover number of 50 000, with high regioselectivity (97 %) and reduced peroxidative activity.


Assuntos
Agrocybe/enzimologia , Evolução Molecular Direcionada , Oxigenases de Função Mista/metabolismo , Naftalenos/metabolismo , Naftóis/metabolismo , Engenharia de Proteínas , Agrocybe/genética , Agrocybe/metabolismo , Oxigenases de Função Mista/genética , Modelos Moleculares , Mutação Puntual
15.
Enzyme Microb Technol ; 73-74: 29-33, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-26002501

RESUMO

Unspecific peroxygenase (UPO) is a highly efficient biocatalyst with a peroxide dependent monooxygenase activity and many biotechnological applications, but the absence of suitable heterologous expression systems has precluded its use in different industrial settings. Recently, the UPO from Agrocybe aegerita was evolved for secretion and activity in Saccharomyces cerevisiae [8]. In the current work, we describe a tandem-yeast expression system for UPO engineering and large scale production. By harnessing the directed evolution process in S. cerevisiae, the beneficial mutations for secretion enabled Pichia pastoris to express the evolved UPO under the control of the methanol inducible alcohol oxidase 1 promoter. Whilst secretion levels were found similar for both yeasts in flask fermentation (∼8mg/L), the recombinant UPO from P. pastoris showed a 27-fold enhanced production in fed-batch fermentation (217mg/L). The P. pastoris UPO variant maintained similar biochemical properties of the S. cerevisiae counterpart in terms of catalytic constants, pH activity profiles and thermostability. Thus, this tandem-yeast expression system ensures the engineering of UPOs to use them in future industrial applications as well as large scale production.


Assuntos
Agrocybe/enzimologia , Evolução Molecular Direcionada/métodos , Proteínas Fúngicas/biossíntese , Oxigenases de Função Mista/biossíntese , Pichia/metabolismo , Engenharia de Proteínas/métodos , Saccharomyces cerevisiae/metabolismo , Agrocybe/genética , Oxirredutases do Álcool/genética , Fermentação , Proteínas Fúngicas/genética , Genes Fúngicos , Oxigenases de Função Mista/genética , Regiões Promotoras Genéticas/genética , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo
16.
Curr Microbiol ; 71(2): 204-13, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25903265

RESUMO

The large number of spores produced by edible mushrooms cause many problems, including causing lung disease, depleting natural genetic diversity, and reduced quality of fruiting bodies. Obtaining spore-deficient strains and understanding the underlying molecular mechanisms of such strains are important for breeding work. In this study, we crossed monokaryotic strains isolated from the edible fungi Agrocybe salicacola to obtain three spore-deficient strains with losses of the sterigmata on the surface of the lamella. A mating test revealed that recessive alleles distributed in some strains might control sterigmata development during the mitotic or meiotic phases. Transcriptome analysis revealed that the majority of the genes involved in DNA mismatch repair, base excision repair, and homologous recombination exhibited down-regulated expression patterns in the mutant fruiting bodies. Five genetic fragments, which were highly similar to the GTP-cyclohydrolase encoding gene, the DNA repair gene rad 8, and cell wall integrity and stress response component-encoding genes, were all expressed exclusively in the wild-type strains; these findings provide important information for the study of the spore development of edible fungi.


Assuntos
Agrocybe/genética , Proteínas Fúngicas/genética , Esporos Fúngicos/crescimento & desenvolvimento , Transcriptoma , Agrocybe/crescimento & desenvolvimento , Agrocybe/metabolismo , Proteínas Fúngicas/metabolismo , Regulação da Expressão Gênica no Desenvolvimento , Regulação Fúngica da Expressão Gênica , Esporos Fúngicos/genética , Esporos Fúngicos/metabolismo
17.
Appl Environ Microbiol ; 80(11): 3496-507, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24682297

RESUMO

Unspecific peroxygenase (UPO) represents a new type of heme-thiolate enzyme with self-sufficient mono(per)oxygenase activity and many potential applications in organic synthesis. With a view to taking advantage of these properties, we subjected the Agrocybe aegerita UPO1-encoding gene to directed evolution in Saccharomyces cerevisiae. To promote functional expression, several different signal peptides were fused to the mature protein, and the resulting products were tested. Over 9,000 clones were screened using an ad hoc dual-colorimetric assay that assessed both peroxidative and oxygen transfer activities. After 5 generations of directed evolution combined with hybrid approaches, 9 mutations were introduced that resulted in a 3,250-fold total activity improvement with no alteration in protein stability. A breakdown between secretion and catalytic activity was performed by replacing the native signal peptide of the original parental type with that of the evolved mutant; the evolved leader increased functional expression 27-fold, whereas an 18-fold improvement in the kcat/Km value for oxygen transfer activity was obtained. The evolved UPO1 was active and highly stable in the presence of organic cosolvents. Mutations in the hydrophobic core of the signal peptide contributed to enhance functional expression up to 8 mg/liter, while catalytic efficiencies for peroxidative and oxygen transfer reactions were increased by several mutations in the vicinity of the heme access channel. Overall, the directed-evolution platform described is a valuable point of departure for the development of customized UPOs with improved features and for the study of structure-function relationships.


Assuntos
Agrocybe/enzimologia , Evolução Molecular Direcionada , Oxigenases de Função Mista/genética , Oxigenases de Função Mista/metabolismo , Engenharia de Proteínas/métodos , Saccharomyces cerevisiae/enzimologia , Agrocybe/genética , Colorimetria/métodos , Estabilidade Enzimática , Perfilação da Expressão Gênica , Testes Genéticos , Cinética , Oxigenases de Função Mista/química , Sinais Direcionadores de Proteínas/genética , Saccharomyces cerevisiae/genética
18.
Fungal Genet Biol ; 72: 131-136, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24657475

RESUMO

Agrocybe praecox is a litter-decomposing Basidiomycota species of the order Agaricales, and is frequently found in forests and open woodlands. A. praecox grows in leaf-litter and the upper soil and is able to colonize bark mulch and wood chips. It produces extracellular manganese peroxidase (MnP) activities and mineralizes synthetic lignin. In this study, the A. praecox MnP1 isozyme was purified, cloned and enzymatically characterized. The enzyme catalysed the oxidation of Mn(2+) to Mn(3+), which is the specific reaction for manganese-dependent class II heme-peroxidases, in the presence of malonate as chelator with an activity maximum at pH 4.5; detectable activity was observed even at pH 7.0. The coding sequence of the mnp1 gene demonstrates a short-type of MnP protein with a slightly modified Mn(2+) binding site. Thus, A. praecox MnP1 may represent a novel group of atypical short-MnP enzymes. In lignocellulose-containing cultures composed of cereal bran or forest litter, transcription of mnp1 gene was followed by quantitative real-time RT-PCR. On spruce needle litter, mnp1 expression was more abundant than on leaf litter after three weeks cultivation. However, the expression was constitutive in wheat and rye bran cultures. Our data show that the atypical MnP of A. praecox is able to catalyse Mn(2+) oxidation, which suggests its involvement in lignocellulose decay by this litter-decomposer.


Assuntos
Agrocybe/enzimologia , Peroxidases/genética , Peroxidases/metabolismo , Agrocybe/genética , Agrocybe/metabolismo , Clonagem Molecular , DNA Fúngico/química , DNA Fúngico/genética , Fibras na Dieta/metabolismo , Fibras na Dieta/microbiologia , Estabilidade Enzimática , Expressão Gênica , Perfilação da Expressão Gênica , Concentração de Íons de Hidrogênio , Manganês/metabolismo , Dados de Sequência Molecular , Oxirredução , Peroxidases/química , Peroxidases/isolamento & purificação , Folhas de Planta/metabolismo , Folhas de Planta/microbiologia , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Análise de Sequência de DNA
19.
PLoS One ; 8(2): e56686, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23418592

RESUMO

BACKGROUND: Agrocybe aegerita, the black poplar mushroom, has been highly valued as a functional food for its medicinal and nutritional benefits. Several bioactive extracts from A. aegerita have been found to exhibit antitumor and antioxidant activities. However, limited genetic resources for A. aegerita have hindered exploration of this species. METHODOLOGY/PRINCIPAL FINDINGS: To facilitate the research on A. aegerita, we established a deep survey of the transcriptome and proteome of this mushroom. We applied high-throughput sequencing technology (Illumina) to sequence A. aegerita transcriptomes from mycelium and fruiting body. The raw clean reads were de novo assembled into a total of 36,134 expressed sequences tags (ESTs) with an average length of 663 bp. These ESTs were annotated and classified according to Gene Ontology (GO), Clusters of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways. Gene expression profile analysis showed that 18,474 ESTs were differentially expressed, with 10,131 up-regulated in mycelium and 8,343 up-regulated in fruiting body. Putative genes involved in polysaccharide and steroid biosynthesis were identified from A. aegerita transcriptome, and these genes were differentially expressed at the two stages of A. aegerita. Based on one-dimensional gel electrophoresis (1-DGE) coupled with electrospray ionization liquid chromatography tandem MS (LC-ESI-MS/MS), we identified a total of 309 non-redundant proteins. And many metabolic enzymes involved in glycolysis were identified in the protein database. CONCLUSIONS/SIGNIFICANCE: This is the first study on transcriptome and proteome analyses of A. aegerita. The data in this study serve as a resource of A. aegerita transcripts and proteins, and offer clues to the applications of this mushroom in nutrition, pharmacy and industry.


Assuntos
Agrocybe/genética , Agrocybe/metabolismo , Proteoma/análise , Transcriptoma/genética , Eletroforese em Gel de Poliacrilamida , Metabolismo Energético/genética , Etiquetas de Sequências Expressas , Carpóforos/genética , Carpóforos/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Perfilação da Expressão Gênica/métodos , Redes Reguladoras de Genes/genética , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Anotação de Sequência Molecular , Dados de Sequência Molecular , Micélio/genética , Micélio/metabolismo , Polissacarídeos/biossíntese , Proteômica/métodos , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Espectrometria de Massas por Ionização por Electrospray , Esteroides/biossíntese , Espectrometria de Massas em Tandem , Vocabulário Controlado
20.
J Biochem ; 150(5): 545-52, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21813503

RESUMO

Sialic acid represents a critical sugar component located at the outermost position of glycoconjugates, playing important roles in extensive biological processes. To date, however, there have been only few probes which show affinity to α(2,3)-linked sialic acid-containing glycoconjugates. Agrocybe cylindracea galectin is known to have a relatively high affinity towards Neu5Acα(2,3)Galß(1,4)Glc (3'-sialyl lactose), but it significantly recognizes various ß-galactosides, such as Galß(1,4)GlcNAcß (LacNAc) and Galß(1,3)GalNAcα (T-antigen). To eliminate this background specificity, we focused an acidic amino acid residue (Glu86), which interacts with the glucose unit of 3'-sialyl lactose and substituted it with all other amino acids. Carbohydrate-binding specificity of the derived 14 mutants was analysed by surface plasmon resonance, and it was found that E86D mutant (Glu86 substituted with Asp) substantially lost the binding ability to LacNAc and T-antigen, while it retained the high affinity for 3'-sialyl lactose. Further, frontal affinity chromatography analysis using 132 pyridylaminated oligosaccharides confirmed that the E86D mutant had a strong preference for α(2,3)-disialo biantennary N-linked glycan. However, it showed the large decrease in the affinity for any of the asialo complex-type N-glycans and the glycolipid-type glycans. Thus, the developed mutant E86D will be of practical use in various fields relevant to cell biology and glycotechnology.


Assuntos
Agrocybe/metabolismo , Galectinas/metabolismo , Mutagênese/fisiologia , Ácido N-Acetilneuramínico/metabolismo , Polissacarídeos/metabolismo , Engenharia de Proteínas/métodos , Agrocybe/genética , Galectinas/química , Galectinas/genética , Ligação de Hidrogênio , Mutagênese/genética , Ácido N-Acetilneuramínico/química , Ligação Proteica
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