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1.
Biomolecules ; 10(9)2020 09 07.
Artigo em Inglês | MEDLINE | ID: mdl-32906756

RESUMO

ß-1,3 xylanase is an important enzyme in the biorefinery process for some algae. The discovery and characterization of new ß-1,3 xylanase is a hot research topic. In this paper, a novel ß-1,3 xylanase (Xyl88) is revealed from the annotated genome of Flammeovirga pacifica strain WPAGA1. Bioinformatic analysis shows that Xyl88 belongs to the glycoside hydrolase 26 (GH26) with a suspected CBM (carbohydrate-binding module) sequence. The activity of rXyl88 is 75% of the highest enzyme activity (1.5 mol/L NaCl) in 3 mol/L NaCl buffer, which suggests good salt tolerance of rXy188. The optimum reaction temperature in the buffer without NaCl and with 1.5 mol/L NaCl is 45 °C and 55 °C, respectively. Notably, the catalytic efficiency of rXyl88 (kcat/Km) is approximately 20 higher than that of the thermophilic ß-1,3 xylanase that has the highest catalytic efficiency. Xyl88 in this study becomes the most efficient enzyme ever found, and it is also the first reported moderately thermophilic and salt-tolerant ß-1,3 xylanase. Results of molecular dynamics simulation further prove the excellent thermal stability of Xyl88. Moreover, according to the predicted 3D structure of the Xyl88, the surface of the enzyme is distributed with more negative charges, which is related to its salt tolerance, and significantly more hydrogen bonds and Van der Waals force between the intramolecular residues, which is related to its thermal stability.


Assuntos
Bacteroidetes/enzimologia , Xilano Endo-1,3-beta-Xilosidase/química , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Bacteroidetes/genética , Cátions/metabolismo , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Cinética , Modelos Moleculares , Receptores de Superfície Celular/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Tolerância ao Sal , Alinhamento de Sequência , Cloreto de Sódio , Temperatura , Xilano Endo-1,3-beta-Xilosidase/genética , Xilano Endo-1,3-beta-Xilosidase/isolamento & purificação , Xilanos/metabolismo
2.
Appl Microbiol Biotechnol ; 104(12): 5347-5360, 2020 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32318768

RESUMO

Lytic polysaccharide monooxygenases (LPMOs) with synergistic effect on polysaccharide hydrolase represent a revolution in biotechnology, which may accelerate the conversion of biomass to the second-generation biofuels. Discovering more hydrolases that have synergism with LPMOs will considerably expand the knowledge and application of biomass degradation. The LPMOs named CgAA9 were verified to exhibit 1.52-fold synergism when incubated with ß-1,3-xylanase at a molar ratio of 3:1. The ion chromatography results proved that CgAA9 did not alter the endogenous hydrolysis mode of ß-1,3-xylanase. Meanwhile, to decrease the operational cost of enzymes, a novel strategy for immobilizing LPMOs and ß-1,3-xylanases based on the biomimetic silica nanoparticles was developed. It enabled preparation of immobilized enzymes directly from the cell lysate. The immobilization efficiency and activity recovery reached 84.6 and 81.4%. They showed excellent reusability for 12 cycles by retaining 68% of initial activity. The optimum temperature for both free and immobilized biocatalyst were 40 and 37 °C, indicating they were ideal candidates for typical simultaneous saccharification and fermentation (SSF) in ethanol production from algea biomass. This was the first report on the synergy between LPMOs and ß-1,3-xylanase, and the strategy for enzyme self-immobilization was simple, timesaving, and efficient, which might have great potentials in algae biomass hydrolysis. KEY POINTS: • The lytic polysaccharide monooxygenases (LPMOs) from Chaetomium globosum were firstly verified to boost the hydrolysis of ß-1,3-xylanases for ß-1,3-xylan. • A novel strategy for simple preparation of SpyCather-modifed silica nanopartilcles and intelligent immobilization of target enzymes from the cell lysate was proposed. • The immobilized LPMOs and ß-1,3-xylanases could be reasonable alternatives for typical simultaneous saccharification and fermentation (SSF) in manipulation of algae biomass.


Assuntos
Enzimas Imobilizadas/metabolismo , Oxigenases de Função Mista/metabolismo , Nanopartículas/química , Dióxido de Silício/metabolismo , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Xilanos/metabolismo , Biocatálise , Biomassa , Materiais Biomiméticos/química , Fermentação , Hidrólise
3.
Carbohydr Polym ; 237: 116121, 2020 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-32241400

RESUMO

Here, we proposed an effective strategy to enhance a novel endoxylanase (Taxy11) activity and elucidated an efficient catalysis mechanism to produce xylooligosaccharides (XOSs). Codon optimization and recruitment of natural propeptide in Pichia pastoris resulted in achievement of Taxy11 activity to 1405.65 ±â€¯51.24 U/mL. Analysis of action mode reveals that Taxy11 requires at least three xylose (xylotriose) residues for hydrolysis to yield xylobiose. Results of site-directed mutagenesis indicate that residues Glu119, Glu210, and Asp53 of Taxy11 are key catalytic sites, while Asp203 plays an auxiliary role. The novel mechanism whereby Taxy11 catalyzes conversion of xylan or XOSs into major product xylobiose involves transglycosylation of xylose to xylotriose or xylotetraose as substrate, to form xylotetraose or xylopentaose intermediate, respectively. Taxy11 displayed highly hydrolytic activity toward corncob xylan, producing 50.44 % of xylobiose within 0.5 h. This work provides a cost-effective and sustainable way to produce value-added biomolecules XOSs (xylobiose-enriched) from agricultural waste.


Assuntos
Dissacarídeos/biossíntese , Endo-1,4-beta-Xilanases/metabolismo , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Xilanos/metabolismo , Clonagem Molecular , Hidrólise , Cinética , Pichia/genética , Especificidade por Substrato , Trichoderma/enzimologia , Trissacarídeos/biossíntese , Xilose/metabolismo
4.
Br Poult Sci ; 60(4): 423-430, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30958027

RESUMO

1. In this study, 240 ISA Brown hens were fed diets containing different levels of hybrid rye, and the influence of xylanase addition on laying performance and egg quality was evaluated. 2. Birds were allocated to 10 treatment groups with 12 replicates (cages) of two hens and were fed, from week 26 to 50, isocaloric and isonitrogenous experimental diets. A 5 × 2 experimental arrangement was applied, using diets with increasing level of rye (0%, 10%, 15%, 20% or 25%) with or without xylanase supplementation (200 mg/kg of feed; Ronozyme WX (CT) with minimum xylanase activity of 1,000 FXU/g). 3. Increasing dietary level of rye did not affect daily mass of eggs, mean egg weight or feed conversion ratio (P > 0.05). Laying rate decreased in all groups fed with rye. Egg and eggshell quality indices were unaffected by dietary rye grain (P > 0.05); however, rye inclusion significantly decreased yolk colour on the DSM scale (P < 0.05). In comparison with the control group, high dietary levels of rye (25%) significantly increased viscosity of small intestine content (P < 0.05). Diet supplementation with xylanase had no significant effect on egg production indices and egg quality (except for yolk colour) but decreased the viscosity of intestinal content in laying hens fed high levels of rye (P < 0.05). 4. The results of this experiment suggest that rye may be incorporated to a level of 25% in the diet of laying hens without any strong negative effect on egg performance, while xylanase added to high-rye grain reduced the viscosity of intestinal content; however, it did not positively affect the laying performance or egg quality.


Assuntos
Galinhas/fisiologia , Óvulo/efeitos dos fármacos , Reprodução/efeitos dos fármacos , Secale/química , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Ração Animal/análise , Fenômenos Fisiológicos da Nutrição Animal/efeitos dos fármacos , Animais , Dieta/veterinária , Suplementos Nutricionais/análise , Casca de Ovo/efeitos dos fármacos , Casca de Ovo/fisiologia , Feminino , Óvulo/fisiologia , Reprodução/fisiologia , Xilano Endo-1,3-beta-Xilosidase/administração & dosagem
5.
Plant Cell Physiol ; 60(7): 1567-1580, 2019 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-31020320

RESUMO

The surface of most aerial plant organs is covered with the cuticle, a membrane consisting of a variety of organic compounds, including waxes, cutin (a polyester) and polysaccharides. The cuticle serves as the multifunctional interface between the plant and the environment, and plays a major role in protecting plants against various environmental stress factors. Characterization of the molecular arrangements in the intact cuticle is critical for the fundamental understanding of its physicochemical properties; however, this analysis remains technically challenging. Here, we describe the nondestructive characterization of the intact cuticle of Brassica oleracea L. leaves using polarization modulation-infrared (IR) reflection-absorption spectroscopy (PM-IRRAS). PM-IRRAS has a probing depth of less than several hundreds of nanometers, and reveals the crystalline structure of the wax covering the cuticle surface (epicuticular wax) and the nonhydrogen-bonding character of cutin. Combined analysis using attenuated total reflection-IR spectra suggested that hemicelluloses xylan and xyloglucan are present in the outer cuticle region close to the epicuticular wax, whereas pectins are dominant in the inner cuticle region (depth of ≤2 µm). PM-IRRAS can also determine the average orientation of the cuticular molecules, as indicated by the positive and negative spectral peaks. This unique advantage reveals the orientational order in the intact cuticle; the hydrocarbon chains of the epicuticular wax and cutin and the backbones of hemicelluloses are oriented perpendicular to the leaf surface. PM-IRRAS is a versatile, informative and easy-to-use technique for studying plant cuticles because it is nondestructive and does not require sample pretreatment and background measurements.


Assuntos
Brassica/metabolismo , Folhas de Planta/metabolismo , Espectroscopia de Luz Próxima ao Infravermelho/métodos , Brassica/química , Glucanos/química , Glucanos/metabolismo , Lipídeos de Membrana/química , Lipídeos de Membrana/metabolismo , Epiderme Vegetal/química , Epiderme Vegetal/metabolismo , Folhas de Planta/química , Xilano Endo-1,3-beta-Xilosidase/química , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Xilanos/química , Xilanos/metabolismo
6.
Enzyme Microb Technol ; 112: 72-78, 2018 May.
Artigo em Inglês | MEDLINE | ID: mdl-29499784

RESUMO

In previous reports, we characterized four endo-xylanases produced by Streptomyces sp. strain SWU10 that degrade xylans to several xylooligosaccharides. To obtain a set of enzymes to achieve complete xylan degradation, a ß-d-xylosidase gene was cloned and expressed in Escherichia coli, and the recombinant protein, named rSWU43A, was characterized. SWU43A is composed of 522 amino acids and does not contain a signal peptide, indicating that the enzyme is an intracellular protein. SWU43A was revealed to contain a Glyco_hydro_43 domain and possess the three conserved amino acid residues of the glycoside hydrolase family 43 proteins. The molecular mass of rSWU43A purified by Ni-affinity column chromatography was estimated to be 60kDa. The optimum reaction conditions of rSWU43A were pH 6.5 and 40°C. The enzyme was stable up to 40°C over a wide pH range (3.1-8.9). rSWU43A activity was enhanced by Fe2+ and Mn2+ and inhibited by various metals (Ag+, Cd2+, Co2+, Cu2+, Hg2+, Ni2+, and Zn2+), d-xylose, and l-arabinose. rSWU43A showed activity on p-nitrophenyl-ß-d-xylopyranoside and p-nitrophenyl-α-l-arabinofuranoside substrates, with specific activities of 0.09 and 0.06U/mg, respectively, but not on any xylosidic or arabinosidic polymers. rSWU43A efficiently degraded ß-1,3-xylooligosaccharides to produce xylose but showed little activity towards ß-1,4-xylobiose, with specific activities of 1.33 and 0.003U/mg, respectively. These results demonstrate that SWU43A is a ß-1,3-d-xylosidase (EC 3.2.1.72), which to date has only been described in the marine bacterium Vibrio sp. Therefore, rSWU43A of Streptomyces sp. is the first ß-1,3-xylosidase found in gram-positive bacteria. SWU43A could be useful as a specific tool for the structural elucidation and production of xylose from ß-1,3-xylan in seaweed cell walls.


Assuntos
Proteínas de Bactérias/metabolismo , Streptomyces/enzimologia , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Biotecnologia , Clonagem Molecular , Estabilidade Enzimática , Genes Bacterianos , Glucuronatos/metabolismo , Cinética , Peso Molecular , Oligossacarídeos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Streptomyces/genética , Especificidade por Substrato , Xilano Endo-1,3-beta-Xilosidase/química , Xilano Endo-1,3-beta-Xilosidase/genética , Xilanos/metabolismo
7.
BMC Biotechnol ; 17(1): 26, 2017 03 07.
Artigo em Inglês | MEDLINE | ID: mdl-28270131

RESUMO

BACKGROUND: Xylanase inhibitors have been confirmed to be involved in plant defence. OsXIP is a XIP-type rice xylanase inhibitor, yet its transcriptional regulation remains unknown. RESULTS: Herbivore infestation, wounding and methyl jasmonate (MeJA) treatment enhanced mRNA levels and protein levels of OsXIP. By analyzing different 5' deletion mutants of OsXIP promoter exposed to rice brown planthopper Nilaparvata lugens stress, a 562 bp region (-1451 - -889) was finally identified as the key sequence for the herbivores stress response. Using yeast one-hybrid screening, coupled with chromatin immunoprecipitation analysis, a basic helix-loop-helix protein (OsbHLH59) and an APETALA2/ETHYLENE RESPONSE FACTOR (AP2/ERF) transcription factor OsERF71 directly binding to the 562 bp key sequence to activate the expression of OsXIP were identified, which is further supported by transient expression assay. Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues. CONCLUSIONS: Our data shows that two proteins as direct transcriptional activators of OsXIP responding to stress were identified. These results reveal a coordinated regulatory mechanism of OsXIP, which may probably be involved in defence responses via a JA-mediated signaling pathway.


Assuntos
Regulação da Expressão Gênica de Plantas/fisiologia , Oryza/fisiologia , Oryza/parasitologia , Proteínas de Plantas/metabolismo , Fatores de Transcrição/metabolismo , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Animais , Ativação Enzimática , Hemípteros/patogenicidade , Hemípteros/fisiologia , Doenças das Plantas/parasitologia , Ativação Transcricional/fisiologia , Xilano Endo-1,3-beta-Xilosidase/antagonistas & inibidores
8.
Carbohydr Res ; 407: 79-96, 2015 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-25723624

RESUMO

A range of α-L-arabinofuranosyl-(1-4)-ß-D-xylo-oligosaccharides (AXOS) were produced by hydrolysis of wheat flour arabinoxylan (WAX) and acid debranched arabinoxylan (ADWAX), in the presence and absence of an AXH-d3 α-L-arabinofuranosidase, by several GH10 and GH11 ß-xylanases. The structures of the oligosaccharides were characterised by GC-MS and NMR and by hydrolysis by a range of α-L-arabinofuranosidases and ß-xylosidase. The AXOS were purified and used to characterise the action patterns of the specific α-L-arabinofuranosidases. These enzymes, in combination with either Cellvibrio mixtus or Neocallimastix patriciarum ß-xylanase, were used to produce elevated levels of specific AXOS on hydrolysis of WAX, such as 3(2)-α-L-Araf-(1-4)-ß-D-xylobiose (A(3)X), 2(3)-α-L-Araf-(1-4)-ß-D-xylotriose (A(2)XX), 3(3)-α-L-Araf-(1-4)-ß-D-xylotriose (A(3)XX), 2(2)-α-L-Araf-(1-4)-ß-D-xylotriose (XA(2)X), 3(2)-α-L-Araf (1-4)-ß-D-xylotriose (XA(3)X), 2(3)-α-L-Araf-(1-4)-ß-D-xylotetraose (XA(2)XX), 3(3)-α-L-Araf-(1-4)-ß-D-xylotetraose (XA(3)XX), 2(3),3(3)-di-α-L-Araf-(1-4)-ß-D-xylotriose (A(2+3)XX), 2(3),3(3)-di-α-L-Araf-(1-4)-ß-D-xylotetraose (XA(2+3)XX), 2(4),3(4)-di-α-L-Araf-(1-4)-ß-D-xylopentaose (XA(2+3)XXX) and 3(3),3(4)-di-α-L-Araf-(1-4)-ß-D-xylopentaose (XA(3)A(3)XX), many of which have not previously been produced in sufficient quantities to allow their use as substrates in further enzymic studies. For A(2,3)XX, yields of approximately 16% of the starting material (wheat arabinoxylan) have been achieved. Mixtures of the α-L-arabinofuranosidases, with specific action on AXOS, have been combined with ß-xylosidase and ß-xylanase to obtain an optimal mixture for hydrolysis of arabinoxylan to L-arabinose and D-xylose.


Assuntos
Glicosídeo Hidrolases/metabolismo , Oligossacarídeos/química , Triticum/química , Xilanos/química , Sequência de Carboidratos , Endo-1,4-beta-Xilanases/metabolismo , Hidrólise , Especificidade por Substrato , Xilano Endo-1,3-beta-Xilosidase/metabolismo
9.
Biotechnol Lett ; 37(1): 89-94, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25214227

RESUMO

Cold-adapted ß-1,3-xylanase (P.t.Xyn26A) from the psychrotrophic bacterium, Psychroflexus torquis, was expressed as a fusion protein with tandem repeats of the N-terminal domain of Protein S from Myxocuccus xanthus (ProS2) in Escherichia coli. After cell lysis in phosphate buffer, most of the ProS2-P.t.Xyn26A was located in the insoluble fraction and aggregated during purification. Arginine hydrochloride (ArgHCl) efficiently solubilized the ProS2-P.t.Xyn26A. The solubilized ProS2-P.t.Xyn26A was purified using immobilized metal affinity chromatography (IMAC) with 500 mM ArgHCl. After cleavage of ProS2-P.t.Xyn26A by human rhinovirus 3C protease, we confirmed that recombinant P.t.Xyn26A maintained its native fold. This is the first report of the expression of a cold-adapted enzyme fused with a ProS2 tag under IMAC purification using a high concentration of ArgHCl. These insights into the expression and purification should be useful during the handling of cold-adapted enzymes.


Assuntos
Arginina/química , Proteínas de Bactérias/genética , Cromatografia de Afinidade/métodos , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Xilano Endo-1,3-beta-Xilosidase/isolamento & purificação , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Escherichia coli/genética , Flavobacteriaceae/enzimologia , Flavobacteriaceae/genética , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Xilano Endo-1,3-beta-Xilosidase/química , Xilano Endo-1,3-beta-Xilosidase/genética
10.
Appl Microbiol Biotechnol ; 97(15): 6749-57, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23149756

RESUMO

The biochemical properties of a putative ß-1,3-xylanase from the hyperthermophilic eubacterium Thermotoga neapolitana DSM 4359 were determined from a recombinant protein (TnXyn26A) expressed in Escherichia coli. This enzyme showed specific hydrolytic activity against ß-1,3-xylan and released ß-1,3-xylobiose and ß-1,3-xylotriose as main products. It displayed maximum activity at 85 °C during a 10-min incubation, and its activity half-life was 23.9 h at 85 °C. Enzyme activity was stable in the pH range 3-10, with pH 6.5 being optimal. Enzyme activity was significantly inhibited by the presence of N-bromosuccinimide (NBS). The insoluble ß-1,3-xylan K m value was 10.35 mg/ml and the k cat value was 588.24 s(-1). The observed high thermostability and catalytic efficiency of TnXyn26A is both industrially desirable and also aids an understanding of the chemistry of its hydrolytic reaction.


Assuntos
Thermotoga neapolitana/enzimologia , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Biocatálise , Primers do DNA , Estabilidade Enzimática , Hidrólise , Cinética , Mutagênese Sítio-Dirigida , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Xilano Endo-1,3-beta-Xilosidase/química
11.
J Am Chem Soc ; 134(8): 3895-902, 2012 Feb 29.
Artigo em Inglês | MEDLINE | ID: mdl-22296113

RESUMO

Xylanases capable of degrading the crystalline microfibrils of 1,3-xylan that reinforce the cell walls of some red and siphonous green algae have not been well studied, yet they could prove to be of great utility in algaculture for the production of food and renewable chemical feedstocks. To gain a better mechanistic understanding of these enzymes, a suite of reagents was synthesized and evaluated as substrates and inhibitors of an endo-1,3-xylanase. With these reagents, a retaining mechanism was confirmed for the xylanase, its catalytic nucleophile identified, and the existence of -3 to +2 substrate-binding subsites demonstrated. Protein crystal X-ray diffraction methods provided a high resolution structure of a trapped covalent glycosyl-enzyme intermediate, indicating that the 1,3-xylanases likely utilize the (1)S(3) → (4)H(3) → (4)C(1) conformational itinerary to effect catalysis.


Assuntos
Biomassa , Xilano Endo-1,3-beta-Xilosidase/química , Cristalografia por Raios X , Modelos Moleculares , Oligossacarídeos/biossíntese , Oligossacarídeos/química , Xilano Endo-1,3-beta-Xilosidase/metabolismo
12.
Artigo em Inglês | MEDLINE | ID: mdl-21795792

RESUMO

Crystals of ß-1,3-xylanase (1,3-ß-D-xylan xylanohydrolase; EC 3.2.1.32) from Thermotoga neapolitana strain DSM 4359 with maximum dimensions of 0.2×0.1×0.02 mm were grown using the sitting-drop vapour-diffusion method at 293 K over 24 h. The crystals diffracted to a resolution of 1.82 Å, allowing structure determination. The crystals belonged to space group P2(1), with unit-cell parameters a=39.061, b=75.828, c=52.140 Å; each asymmetric unit cell contained a single molecule.


Assuntos
Thermotoga neapolitana/enzimologia , Xilano Endo-1,3-beta-Xilosidase/química , Cristalização , Cristalografia por Raios X , Estabilidade Enzimática , Expressão Gênica
13.
Prikl Biokhim Mikrobiol ; 47(3): 308-17, 2011.
Artigo em Russo | MEDLINE | ID: mdl-21790031

RESUMO

A heterologous gene expression system was created in a domestic Aspergillus awamori Co-6804 strain, which is a producer of the glucoamylase gene. Vector pGa was prepared using promoter and terminator areas of the glucoamylase gene, and A. niger phytase, Trichoderma reesei endoglucanase, and Penicillium canescens xylanase genes were then cloned into pGa vector. Separation of enzyme samples using FPLC showed the amount of the recombinant proteins to be within the 0.6-14% range of total protein.


Assuntos
Aspergillus/genética , Regulação Fúngica da Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/isolamento & purificação , Proteínas Recombinantes/biossíntese , 6-Fitase/genética , 6-Fitase/metabolismo , Aspergillus/enzimologia , Sequência de Bases , Biotecnologia , Celulase/genética , Celulase/metabolismo , Clonagem Molecular , Engenharia Genética , Glucana 1,4-alfa-Glucosidase/genética , Glucana 1,4-alfa-Glucosidase/metabolismo , Dados de Sequência Molecular , Penicillium/química , Penicillium/enzimologia , Regiões Promotoras Genéticas , Proteínas Recombinantes/genética , Regiões Terminadoras Genéticas , Trichoderma/química , Trichoderma/enzimologia , Xilano Endo-1,3-beta-Xilosidase/genética , Xilano Endo-1,3-beta-Xilosidase/metabolismo
14.
Biosci Biotechnol Biochem ; 75(6): 1129-34, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21670524

RESUMO

A crude endo-xylanase produced by Aspergillus niger BCC14405 was investigated for its potential in pre-bleaching of chemical pulp from eucalyptus. The optimal fermentation conditions on the basis of optimization using response surface methodology included cultivation in a complex medium comprising wheat bran, rice bran, and soybean meal supplemented with yeast extract, glucose, peptone, and lactose with a starting pH of 6.0 for 7 d. This resulted in production of 89.5 IU/mL of xylanase with minor cellulase activity. Proteomic analysis using LC/MS/MS revealed that the crude enzyme was a composite of hemicellulolytic enzymes, including endo-ß-1,4-xylanase and other hemicellulolytic enzymes attacking arabinoxylan and mannan. Pretreatment of the pulp at a xylanase dosage of 10 IU/g increased the brightness ceiling after the C-Eop-H bleaching step up to 3.0% using a chlorine charge with a C-factor of 0.16-0.20. Xylanase treatment also led to reduction in chlorine charge of at least 20%, with an acceptable brightness level. The enzyme pretreatment resulted in a slight increase in pulp viscosity, suggesting an increase in relative cellulose content. The crude enzyme was potent in the enzyme-aided bleaching of chemical pulp in an environmentally friendly pulping process.


Assuntos
Aspergillus niger/enzimologia , Clareadores/química , Endo-1,4-beta-Xilanases , Eucalyptus/química , Química Verde/métodos , Xilano Endo-1,3-beta-Xilosidase , Aspergillus niger/química , Clareadores/metabolismo , Celulose/metabolismo , Fibras na Dieta/metabolismo , Endo-1,4-beta-Xilanases/biossíntese , Endo-1,4-beta-Xilanases/isolamento & purificação , Eucalyptus/metabolismo , Fermentação , Glucanos/metabolismo , Concentração de Íons de Hidrogênio , Lactose/metabolismo , Mananas/metabolismo , Peptonas/metabolismo , Glycine max/metabolismo , Temperatura , Viscosidade , Xilano Endo-1,3-beta-Xilosidase/biossíntese , Xilano Endo-1,3-beta-Xilosidase/isolamento & purificação , Xilanos/metabolismo
15.
J Agric Food Chem ; 59(12): 6369-75, 2011 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-21561164

RESUMO

A new technique to visualize cereal cell walls by fluorescence microscopy was developed. The novel staining technique is based on an inactive fluorescently labeled xylanase binding to arabinoxylan (AX), an important polysaccharide in grain cell walls in terms of the technological and physiological functionalities of grain. The xylanase probe could stain AX in the seed coat, nucellar epidermis, aleurone layer, and starchy endosperm, but not the highly substituted AX of the pericarp layer. The advantage of this new staining technique over the existing immunolabeling techniques is that the staining procedure is clearly faster and less laborious, and uses a smaller probe that can easily be produced by marking a well characterized enzyme with a fluorescent label. In the future, the here proposed technology can be used to develop probes having specificity also for cell wall components other than AX and thus to study plant cell walls further through fluorescence microscopy.


Assuntos
Parede Celular/química , Grão Comestível/química , Microscopia de Fluorescência/métodos , Xilano Endo-1,3-beta-Xilosidase/química , Xilanos/química , Parede Celular/metabolismo , Grão Comestível/metabolismo , Microscopia de Fluorescência/instrumentação , Ligação Proteica , Xilanos/metabolismo
16.
Biosci Biotechnol Biochem ; 75(3): 531-7, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21389598

RESUMO

Cellulase-free xylanase production by thermophilic Streptomyces thermovulgaris TISTR1948 was cultivated in a basal medium with rice straw as sole source of carbon and as an inducible substrate. Variable medium components were selected in accordance with the Plackett-Burman experimental design. The optimization conditions of physical factors (pH and temperature levels) were then combined in further studies through the response surface methodology approach. Only two significant components, rice straw and yeast extract, were chosen for the optimization studies. A second-order quadratic model was constructed by central composite design (CCD). The model revealed that both pH and temperature levels were significant, and were dependent on xylanase production. Under these experimental designs, the xylanase yield increased from 51.11 to 274.49 U/mL (3,400 to 10,000 U/g of rice straw) or about 537% higher than an unoptimized basal medium. The optimum conditions to achieve maximum yield of xylanase were 27.45 g/L of rice straw and 5.42 g/L of yeast extract under relatively neutral conditions of pH 7.11, 50.03 °C, and a incubation period.


Assuntos
Endo-1,4-beta-Xilanases/biossíntese , Proteínas Fúngicas/biossíntese , Streptomyces/enzimologia , Xilano Endo-1,3-beta-Xilosidase/biossíntese , Carbono/metabolismo , Celulase/metabolismo , Misturas Complexas/química , Misturas Complexas/metabolismo , Meios de Cultura , Fermentação , Concentração de Íons de Hidrogênio , Modelos Estatísticos , Oryza/química , Oryza/metabolismo , Projetos de Pesquisa , Temperatura , Leveduras/química , Leveduras/metabolismo
17.
Appl Biochem Biotechnol ; 164(6): 819-30, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21298357

RESUMO

A fungal strain, marked as ECU0913, producing high activities of both cellulase and xylanase was newly isolated from soil sample collected near decaying straw and identified as Penicillium sp. based on internal transcribed spacer sequence homology. The cultivation of this fungus produced both cellulase (2.40 FPU/ml) and xylanase (241 IU/ml) on a stepwisely optimized medium at 30 °C for 144 h. The cellulase and xylanase from Penicillium sp. ECU0913 was stable at an ambient temperature with half-lives of 28 and 12 days, respectively. Addition of 3 M sorbitol greatly improved the thermostability of the two enzymes, with half-lives increased by 2.3 and 188-folds, respectively. Catalytic performance of the Penicillium cellulase and xylanase was evaluated by the hydrolysis of corn stover pretreated by steam explosion. With an enzyme dosage of 50 FPU/g dry substrate, the conversions of cellulose and hemicellulose reached 77.2% and 47.5%, respectively, without adding any accessory enzyme.


Assuntos
Celulase/química , Proteínas Fúngicas/química , Penicillium/enzimologia , Penicillium/isolamento & purificação , Xilano Endo-1,3-beta-Xilosidase/química , Zea mays/química , Biocatálise , Celulase/isolamento & purificação , Celulase/metabolismo , Estabilidade Enzimática , Proteínas Fúngicas/isolamento & purificação , Proteínas Fúngicas/metabolismo , Dados de Sequência Molecular , Penicillium/química , Penicillium/genética , Microbiologia do Solo , Xilano Endo-1,3-beta-Xilosidase/isolamento & purificação , Xilano Endo-1,3-beta-Xilosidase/metabolismo
18.
Extremophiles ; 15(2): 311-7, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21331632

RESUMO

The OsmC-region (osmotically induced protein family) of the two-domain esterase EstO from the psychrotolerant bacterium Pseudoalteromonas arctica has been shown to increase thermolability. In an attempt to test if these properties can be conferred to another enzyme, we genetically fused osmC to the 3'-region of the family 8 xylanase encoding gene xyn8 from P. arctica. The chimeric open reading frame xyn8-OsmC was cloned and the chimeric protein was purified after heterologous expression in Escherichia coli. Xyn8 and Xyn8-OsmC showed cold-adapted properties (more than 60% activity at 0°C) using birchwood xylan as the preferred substrate. Maximal catalytic activity is slightly shifted from 15°C (Xyn8) to 20°C for Xyn8-OsmC. Thermostability of Xyn8-OsmC is significantly changed in comparison to wild-type Xyn8. The OsmC-fusion variant showed an apparent decrease in thermostability between 40 and 45°C, while both proteins are highly instable at 50°C.


Assuntos
Proteínas de Bactérias/química , Carboxilesterase/química , Endo-1,4-beta-Xilanases/química , Proteínas de Escherichia coli/química , Regulação Enzimológica da Expressão Gênica , Pseudoalteromonas/enzimologia , Xilano Endo-1,3-beta-Xilosidase/química , Catálise , Clonagem Molecular , Temperatura Baixa , Regulação Bacteriana da Expressão Gênica , Concentração de Íons de Hidrogênio , Cinética , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Temperatura
19.
Appl Biochem Biotechnol ; 164(6): 793-803, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21318368

RESUMO

Solid-state fermentation has been widely used for enzyme production. However, secreted enzymes often bind to the solid substrate preventing their detection and recovery. A series of screening studies was performed to examine the role of extraction buffer composition including NaCl, ethylene glycol, sodium acetate buffer, and Tween 80, on xylanase and cellulase recovery from switchgrass. Our results indicated that the selection of an extraction buffer is highly dependent on the nature and source of the enzyme being extracted. While a buffer containing 50 mM sodium acetate at pH 5 was found to have a positive effect on the recovery of commercial fungal-derived cellulase and xylanase amended to switchgrass, the same buffer had a significant negative effect on enzyme extraction from solid fermentation samples colonized by the bacterium Acidothermus cellulolyticus. Xylanase activity was more affected by components in the extraction buffers compared to cellulase. This study demonstrated that extraction followed by diafiltration is important for assessing enzyme recovery from solid fermentation samples. Reduction in activity due to compounds present in the switchgrass extracts is reversible when the compounds are removed via diafiltration.


Assuntos
Actinomycetales/enzimologia , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Celulase/isolamento & purificação , Fracionamento Químico/métodos , Panicum/microbiologia , Xilano Endo-1,3-beta-Xilosidase/isolamento & purificação , Actinomycetales/química , Actinomycetales/metabolismo , Celulase/metabolismo , Fermentação , Panicum/química , Xilano Endo-1,3-beta-Xilosidase/metabolismo
20.
Mol Biol Rep ; 38(5): 3227-33, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20213504

RESUMO

We studied heterologous expression of xylanase 11A gene of Chaetomium thermophilum in Pichia pastoris and characterized the thermostable nature of the purified gene product. For this purpose, the xylanase 11A gene of C. thermophilum was cloned in P. pastoris GS115 under the control of AOX1 promoter. The maximum extracellular activity of recombinant xylanase (xyn698: gene with intron) was 15.6 U ml(-1) while that of recombinant without intron (xyn669) was 1.26 U ml(-1) after 96 h growth. The gene product was purified apparently to homogeneity level. The optimum temperature of pure recombinant xylanase activity was 70°C and the enzyme retained its 40.57% activity after incubation at 80°C for 10 min. It exhibited quite lower demand of activation energy, enthalpy, Gibbs free energy, entropy, and xylan binding energy during substrate hydrolysis than that required by that of the donor, thus indicating its thermostable nature. pH-dependent catalysis showed that it was quite stable in a pH range of 5.5-8.5. This revealed that gene was successfully processed in P. pastoris and remained heat stable and may qualify for its potential use in paper and pulp and animal feed applications.


Assuntos
Chaetomium/enzimologia , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Pichia/metabolismo , Xilano Endo-1,3-beta-Xilosidase/genética , Xilano Endo-1,3-beta-Xilosidase/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , Estabilidade Enzimática , Dados de Sequência Molecular , Pichia/genética , Regiões Promotoras Genéticas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Termodinâmica
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