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1.

Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region.

Schoeder, Clara T; Gilchuk, Pavlo; Sangha, Amandeep K; Ledwitch, Kaitlyn V; Malherbe, Delphine C; Zhang, Xuan; Binshtein, Elad; Williamson, Lauren E; Martina, Cristina E; Dong, Jinhui; Armstrong, Erica; Sutton, Rachel; Nargi, Rachel; Rodriguez, Jessica; Kuzmina, Natalia; Fiala, Brooke; King, Neil P; Bukreyev, Alexander; Crowe, James E; Meiler, Jens.

PLoS Pathog; 18(5): e1010518, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35584193

2.

Discovery of Marburg virus neutralizing antibodies from virus-naïve human antibody repertoires using large-scale structural predictions.

Bozhanova, Nina G; Sangha, Amandeep K; Sevy, Alexander M; Gilchuk, Pavlo; Huang, Kai; Nargi, Rachel S; Reidy, Joseph X; Trivette, Andrew; Carnahan, Robert H; Bukreyev, Alexander; Crowe, James E; Meiler, Jens.

Proc Natl Acad Sci U S A; 117(49): 31142-31148, 2020 12 08.

Artículo en Inglés | MEDLINE | ID: mdl-33229516

3.

Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design.

Schoeder, Clara T; Schmitz, Samuel; Adolf-Bryfogle, Jared; Sevy, Alexander M; Finn, Jessica A; Sauer, Marion F; Bozhanova, Nina G; Mueller, Benjamin K; Sangha, Amandeep K; Bonet, Jaume; Sheehan, Jonathan H; Kuenze, Georg; Marlow, Brennica; Smith, Shannon T; Woods, Hope; Bender, Brian J; Martina, Cristina E; Del Alamo, Diego; Kodali, Pranav; Gulsevin, Alican; Schief, William R; Correia, Bruno E; Crowe, James E; Meiler, Jens; Moretti, Rocco.

Biochemistry; 60(11): 825-846, 2021 03 23.

Artículo en Inglés | MEDLINE | ID: mdl-33705117

4.

Protocols for Molecular Modeling with Rosetta3 and RosettaScripts.

Bender, Brian J; Cisneros, Alberto; Duran, Amanda M; Finn, Jessica A; Fu, Darwin; Lokits, Alyssa D; Mueller, Benjamin K; Sangha, Amandeep K; Sauer, Marion F; Sevy, Alexander M; Sliwoski, Gregory; Sheehan, Jonathan H; DiMaio, Frank; Meiler, Jens; Moretti, Rocco.

Biochemistry; 55(34): 4748-63, 2016 Aug 30.

Artículo en Inglés | MEDLINE | ID: mdl-27490953

5.

The Impact of Natural Selection on the Evolution and Function of Placentally Expressed Galectins.

Ely, Zackery A; Moon, Jiyun M; Sliwoski, Gregory R; Sangha, Amandeep K; Shen, Xing-Xing; Labella, Abigail L; Meiler, Jens; Capra, John A; Rokas, Antonis.

Genome Biol Evol; 11(9): 2574-2592, 2019 09 01.

Artículo en Inglés | MEDLINE | ID: mdl-31504490

6.

The Marburgvirus-Neutralizing Human Monoclonal Antibody MR191 Targets a Conserved Site to Block Virus Receptor Binding.

King, Liam B; Fusco, Marnie L; Flyak, Andrew I; Ilinykh, Philipp A; Huang, Kai; Gunn, Bronwyn; Kirchdoerfer, Robert N; Hastie, Kathryn M; Sangha, Amandeep K; Meiler, Jens; Alter, Galit; Bukreyev, Alexander; Crowe, James E; Saphire, Erica Ollmann.

Cell Host Microbe; 23(1): 101-109.e4, 2018 Jan 10.

Artículo en Inglés | MEDLINE | ID: mdl-29324225

7.

Role of Non-local Interactions between CDR Loops in Binding Affinity of MR78 Antibody to Marburg Virus Glycoprotein.

Sangha, Amandeep K; Dong, Jinhui; Williamson, Lauren; Hashiguchi, Takao; Saphire, Erica Ollmann; Crowe, James E; Meiler, Jens.

Structure; 25(12): 1820-1828.e2, 2017 12 05.

Artículo en Inglés | MEDLINE | ID: mdl-29153506

8.

Relative Binding Affinities of Monolignols to Horseradish Peroxidase.

Sangha, Amandeep K; Petridis, Loukas; Cheng, Xiaolin; Smith, Jeremy C.

J Phys Chem B; 120(31): 7635-40, 2016 08 11.

Artículo en Inglés | MEDLINE | ID: mdl-27447548

9.

Chemical factors that control lignin polymerization.

Sangha, Amandeep K; Davison, Brian H; Standaert, Robert F; Davis, Mark F; Smith, Jeremy C; Parks, Jerry M.

J Phys Chem B; 118(1): 164-70, 2014 Jan 09.

Artículo en Inglés | MEDLINE | ID: mdl-24341896

10.

L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study.

Langan, Paul; Sangha, Amandeep K; Wymore, Troy; Parks, Jerry M; Yang, Zamin Koo; Hanson, B Leif; Fisher, Zoe; Mason, Sax A; Blakeley, Matthew P; Forsyth, V Trevor; Glusker, Jenny P; Carrell, Horace L; Smith, Jeremy C; Keen, David A; Graham, David E; Kovalevsky, Andrey.

Structure; 22(9): 1287-1300, 2014 Sep 02.

Artículo en Inglés | MEDLINE | ID: mdl-25132082

11.

Radical coupling reactions in lignin synthesis: a density functional theory study.

Sangha, Amandeep K; Parks, Jerry M; Standaert, Robert F; Ziebell, Angela; Davis, Mark; Smith, Jeremy C.

J Phys Chem B; 116(16): 4760-8, 2012 Apr 26.

Artículo en Inglés | MEDLINE | ID: mdl-22475051

12.

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog.

Tschaplinski, Timothy J; Standaert, Robert F; Engle, Nancy L; Martin, Madhavi Z; Sangha, Amandeep K; Parks, Jerry M; Smith, Jeremy C; Samuel, Reichel; Jiang, Nan; Pu, Yunqiao; Ragauskas, Arthur J; Hamilton, Choo Y; Fu, Chunxiang; Wang, Zeng-Yu; Davison, Brian H; Dixon, Richard A; Mielenz, Jonathan R.

Biotechnol Biofuels; 5(1): 71, 2012 Sep 21.

Artículo en Inglés | MEDLINE | ID: mdl-22998926

13.

Protein folding and confinement: inherent structure analysis of chaperonin action.

Sangha, Amandeep K; Keyes, Tom.

J Phys Chem B; 114(50): 16908-17, 2010 Dec 23.

Artículo en Inglés | MEDLINE | ID: mdl-21114309

14.

Proteins fold by subdiffusion of the order parameter.

Sangha, Amandeep K; Keyes, T.

J Phys Chem B; 113(48): 15886-94, 2009 Dec 03.

Artículo en Inglés | MEDLINE | ID: mdl-19902909

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