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1.
Proc Natl Acad Sci U S A ; 121(24): e2320719121, 2024 Jun 11.
Artigo em Inglês | MEDLINE | ID: mdl-38848299

RESUMO

We demonstrate that the complex spatiotemporal structure in active fluids can feature characteristics of hyperuniformity. Using a hydrodynamic model, we show that the transition from hyperuniformity to nonhyperuniformity and antihyperuniformity depends on the strength of active forcing and can be related to features of active turbulence without and with scaling characteristics of inertial turbulence. Combined with identified signatures of Levy walks and nonuniversal diffusion in these systems, this allows for a biological interpretation and the speculation of nonequilibrium hyperuniform states in active fluids as optimal states with respect to robustness and strategies of evasion and foraging.

2.
Proc Natl Acad Sci U S A ; 118(10)2021 03 09.
Artigo em Inglês | MEDLINE | ID: mdl-33653956

RESUMO

Hydrodynamic theories effectively describe many-body systems out of equilibrium in terms of a few macroscopic parameters. However, such parameters are difficult to determine from microscopic information. Seldom is this challenge more apparent than in active matter, where the hydrodynamic parameters are in fact fields that encode the distribution of energy-injecting microscopic components. Here, we use active nematics to demonstrate that neural networks can map out the spatiotemporal variation of multiple hydrodynamic parameters and forecast the chaotic dynamics of these systems. We analyze biofilament/molecular-motor experiments with microtubule/kinesin and actin/myosin complexes as computer vision problems. Our algorithms can determine how activity and elastic moduli change as a function of space and time, as well as adenosine triphosphate (ATP) or motor concentration. The only input needed is the orientation of the biofilaments and not the coupled velocity field which is harder to access in experiments. We can also forecast the evolution of these chaotic many-body systems solely from image sequences of their past using a combination of autoencoders and recurrent neural networks with residual architecture. In realistic experimental setups for which the initial conditions are not perfectly known, our physics-inspired machine-learning algorithms can surpass deterministic simulations. Our study paves the way for artificial-intelligence characterization and control of coupled chaotic fields in diverse physical and biological systems, even in the absence of knowledge of the underlying dynamics.


Assuntos
Hidrodinâmica , Aprendizado de Máquina
3.
Eur Biophys J ; 51(1): 1-13, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-35072747

RESUMO

Long-timescale viscoelasticity caused by collective cell migration (CCM) significantly influences cell rearrangement and induces generation of mechanical waves. The phenomenon represents a product of the active turbulence occurring at low Reynolds number. The generation of mechanical waves has been a subject of intensive research primarily in 2D multicellular systems, while 3D systems have not been considered in this context. The aim of this contribution is to discuss the generation of mechanical waves during 3D CCM in two model systems: (1) the fusion of two-cell aggregates and (2) cell aggregate rounding after uni-axial compression, pointing out that mechanical waves represent a characteristic of CCM in general. Such perturbations are also involved in various biological processes, such as embryogenesis, wound healing and cancer invasion. The inter-relation between the viscoelasticity and the appearance of active turbulence remains poorly understood even in 2D. The phenomenon represents a consequence of the competition between the viscoelastic force and the surface tension force which induces successive stiffening and softening of parts of multicellular systems. The viscoelastic force is a product of the residual cell stress accumulation and its inhomogeneous distribution caused by CCM. This modeling consideration represents a powerful tool to address the generation of mechanical waves in CCM towards an understanding of this important but still controversial topic.


Assuntos
Fenômenos Mecânicos , Modelos Biológicos , Movimento Celular , Viscosidade
4.
Proc Natl Acad Sci U S A ; 114(49): 12870-12875, 2017 12 05.
Artigo em Inglês | MEDLINE | ID: mdl-29158382

RESUMO

Colloidal particles subject to an external periodic forcing exhibit complex collective behavior and self-assembled patterns. A dispersion of magnetic microparticles confined at the air-liquid interface and energized by a uniform uniaxial alternating magnetic field exhibits dynamic arrays of self-assembled spinners rotating in either direction. Here, we report on experimental and simulation studies of active turbulence and transport in a gas of self-assembled spinners. We show that the spinners, emerging as a result of spontaneous symmetry breaking of clock/counterclockwise rotation of self-assembled particle chains, generate vigorous vortical flows at the interface. An ensemble of spinners exhibits chaotic dynamics due to self-generated advection flows. The same-chirality spinners (clockwise or counterclockwise) show a tendency to aggregate and form dynamic clusters. Emergent self-induced interface currents promote active diffusion that could be tuned by the parameters of the external excitation field. Furthermore, the erratic motion of spinners at the interface generates chaotic fluid flow reminiscent of 2D turbulence. Our work provides insight into fundamental aspects of collective transport in active spinner materials and yields rules for particle manipulation at the microscale.

5.
Proc Natl Acad Sci U S A ; 114(9): 2119-2124, 2017 02 28.
Artigo em Inglês | MEDLINE | ID: mdl-28193853

RESUMO

Classical turbulence theory assumes that energy transport in a 3D turbulent flow proceeds through a Richardson cascade whereby larger vortices successively decay into smaller ones. By contrast, an additional inverse cascade characterized by vortex growth exists in 2D fluids and gases, with profound implications for meteorological flows and fluid mixing. The possibility of a helicity-driven inverse cascade in 3D fluids had been rejected in the 1970s based on equilibrium-thermodynamic arguments. Recently, however, it was proposed that certain symmetry-breaking processes could potentially trigger a 3D inverse cascade, but no physical system exhibiting this phenomenon has been identified to date. Here, we present analytical and numerical evidence for the existence of an inverse energy cascade in an experimentally validated 3D active fluid model, describing microbial suspension flows that spontaneously break mirror symmetry. We show analytically that self-organized scale selection, a generic feature of many biological and engineered nonequilibrium fluids, can generate parity-violating Beltrami flows. Our simulations further demonstrate how active scale selection controls mirror-symmetry breaking and the emergence of a 3D inverse cascade.

6.
Philos Trans A Math Phys Eng Sci ; 372(2029)2014 Nov 28.
Artigo em Inglês | MEDLINE | ID: mdl-25332382

RESUMO

We describe a numerical investigation of a continuum model of an active nematic, concentrating on the regime of active turbulence. Results are presented for the effect of three parameters, activity, elastic constant and rotational diffusion constant, on the order parameter and flow fields. Defects and distortions in the director field act as sources of vorticity, and thus vorticity is strongly correlated to the director field. In particular, the characteristic length of decay of vorticity and order parameter correlations is controlled by the defect density. By contrast, the decay of velocity correlations is determined by a balance between activity and dissipation. We highlight the role of microscopic flow generation mechanisms in determining the flow patterns and characteristic scales of active turbulence and contrast the behaviour of extensile and contractile active nematics.

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