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1.
Proc Natl Acad Sci U S A ; 118(46)2021 11 16.
Artigo em Inglês | MEDLINE | ID: mdl-34764222

RESUMO

Benthic N2 production by microbial denitrification and anammox is the largest sink for fixed nitrogen in the oceans. Most N2 production occurs on the continental shelves, where a high flux of reactive organic matter fuels the depletion of nitrate close to the sediment surface. By contrast, N2 production rates in abyssal sediments are low due to low inputs of reactive organics, and nitrogen transformations are dominated by aerobic nitrification and the release of nitrate to the bottom water. Here, we demonstrate that this trend is reversed in the deepest parts of the oceans, the hadal trenches, where focusing of reactive organic matter enhances benthic microbial activity. Thus, at ∼8-km depth in the Atacama Trench, underlying productive surface waters, nitrate is depleted within a few centimeters of the sediment surface, N2 production rates reach those reported from some continental margin sites, and fixed nitrogen loss is mainly conveyed by anammox bacteria. These bacteria are closely related to those known from shallow oxygen minimum zone waters, and comparison of activities measured in the laboratory and in situ suggest they are piezotolerant. Even the Kermadec Trench, underlying oligotrophic surface waters, exhibits substantial fixed N removal. Our results underline the role of hadal sediments as hot spots of deep-sea biological activity, revealing a fully functional benthic nitrogen cycle at high hydrostatic pressure and pointing to hadal sediments as a previously unexplored niche for anaerobic microbial ecology and diagenesis.


Assuntos
Sedimentos Geológicos/microbiologia , Fixação de Nitrogênio/fisiologia , Bactérias Fixadoras de Nitrogênio/metabolismo , Nitrogênio/metabolismo , Oxidação Anaeróbia da Amônia/fisiologia , Desnitrificação/fisiologia , Microbiota/fisiologia , Nitratos/metabolismo , Nitrificação/fisiologia , Ciclo do Nitrogênio/fisiologia , Oceanos e Mares
2.
Environ Res ; 220: 115240, 2023 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-36621544

RESUMO

In order to solve nitrogen pollution in environmental water, two heterotrophic nitrifying and aerobic denitrifying strains isolated from acid paddy soil were identified as Achromobacter sp. strain HNDS-1 and Enterobacter sp. strain HNDS-6 respectively. Strain HNDS-1 and strain HNDS-6 exhibited amazing ability to nitrogen removal. When (NH4)2SO4, KNO3, NaNO2 were used as nitrogen resource respectively, the NH4+-N, NO3--N, NO2--N removal efficiencies of strain HNDS-1 were 93.31%, 89.47%, and 100% respectively, while those of strain HNDS-6 were 82.39%, 96.92%, and 100%. And both of them could remove mixed nitrogen effectively in low C/N (C/N = 5). Strain HNDS-1 could remove 76.86% NH4+-N and 75.13% NO3--N. And strain HNDS-6 can remove 65.07% NH4+-N and 78.21% NO3--N. A putative ammonia monooxygenase, nitrite reductase, nitrate reductase, assimilatory nitrate reductase, nitrate/nitrite transport protein and nitric oxide reductase of strain HNDS-1, while hydroxylamine reductase, nitrite reductase, nitrate reductase, assimilatory nitrate reductase, nitrate/nitrite transport protein, and nitric oxide reductase of strain HNDS-6 were identified by genomic analysis. DNA-SIP analysis showed that genes Nxr, narG, nirK, norB, nosZ were involved in nitrogen removal pathway, which indicates that the denitrification pathway of strain HNDS-1 and strain HNDS-6 was NO3-→NO2-→NO→N2O→N2 during NH4+-N removal process. And the nitrification pathway of strain HNDS-1 and strain HNDS-6 was NO2-→NO3-, but the nitrification pathway of NH4+→ NO2- needs further studies.


Assuntos
Achromobacter , Desnitrificação , Enterobacter , Nitrificação , Achromobacter/genética , Achromobacter/metabolismo , Aerobiose/genética , Aerobiose/fisiologia , Desnitrificação/genética , Desnitrificação/fisiologia , Enterobacter/genética , Enterobacter/metabolismo , Nitratos/metabolismo , Nitrificação/genética , Nitrificação/fisiologia , Nitrito Redutases/metabolismo , Nitritos/metabolismo , Nitrogênio/metabolismo , Dióxido de Nitrogênio/metabolismo
3.
Proc Natl Acad Sci U S A ; 114(31): 8319-8324, 2017 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-28716941

RESUMO

Oxygen availability drives changes in microbial diversity and biogeochemical cycling between the aerobic surface layer and the anaerobic core in nitrite-rich anoxic marine zones (AMZs), which constitute huge oxygen-depleted regions in the tropical oceans. The current paradigm is that primary production and nitrification within the oxic surface layer fuel anaerobic processes in the anoxic core of AMZs, where 30-50% of global marine nitrogen loss takes place. Here we demonstrate that oxygenic photosynthesis in the secondary chlorophyll maximum (SCM) releases significant amounts of O2 to the otherwise anoxic environment. The SCM, commonly found within AMZs, was dominated by the picocyanobacteria Prochlorococcus spp. Free O2 levels in this layer were, however, undetectable by conventional techniques, reflecting a tight coupling between O2 production and consumption by aerobic processes under apparent anoxic conditions. Transcriptomic analysis of the microbial community in the seemingly anoxic SCM revealed the enhanced expression of genes for aerobic processes, such as nitrite oxidation. The rates of gross O2 production and carbon fixation in the SCM were found to be similar to those reported for nitrite oxidation, as well as for anaerobic dissimilatory nitrate reduction and sulfate reduction, suggesting a significant effect of local oxygenic photosynthesis on Pacific AMZ biogeochemical cycling.


Assuntos
Ciclo do Carbono/fisiologia , Nitrificação/fisiologia , Oxigênio/metabolismo , Fotossíntese/fisiologia , Prochlorococcus/metabolismo , Anaerobiose , Organismos Aquáticos/metabolismo , Clorofila/metabolismo , Aquecimento Global , México , Microbiota/fisiologia , Nitrogênio/metabolismo , Oceanos e Mares , Peru
4.
World J Microbiol Biotechnol ; 36(10): 151, 2020 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-32924078

RESUMO

Nitrogen and phosphorous are important inorganic water pollutants that pose a major threat to the environment and health of both humans and animals. The physical and chemical ways to remove these pollutants from water and soil are expensive and harsh, so biological removal becomes the method of choice to alleviate the problem without any side effects. The identification of microorganisms capable of simultaneous heterotrophic nitrification and aerobic denitrification has greatly simplified the sequestration of nitrogen from ammonium (NH4+) into dinitrogen (N2). Further, the discovery of phosphorous accumulating organisms offers greater economic benefits because these organisms can favourably and simultaneously remove both nitrogen and phosphorous from wastewaters hence reducing the nutrient burden. The stability of the system and removal efficiency of inorganic pollutants can be enhanced by the use of immobilized organisms. However, limited work has been done so far in this direction and there is a need to further the efforts towards refining process efficiency by testing low-cost substrates and diverse microbial populations for the total eradication of these contaminants from wastewaters.


Assuntos
Desnitrificação/fisiologia , Nitrificação/fisiologia , Fosfatos/metabolismo , Purificação da Água/métodos , Biodegradação Ambiental , Poluentes Ambientais , Processos Heterotróficos , Imobilização , Nitrogênio/análise , Fósforo , Águas Residuárias
5.
Environ Microbiol ; 21(10): 3831-3854, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31271506

RESUMO

Marine sponges represent one of the few eukaryotic groups that frequently harbour symbiotic members of the Thaumarchaeota, which are important chemoautotrophic ammonia-oxidizers in many environments. However, in most studies, direct demonstration of ammonia-oxidation by these archaea within sponges is lacking, and little is known about sponge-specific adaptations of ammonia-oxidizing archaea (AOA). Here, we characterized the thaumarchaeal symbiont of the marine sponge Ianthella basta using metaproteogenomics, fluorescence in situ hybridization, qPCR and isotope-based functional assays. 'Candidatus Nitrosospongia ianthellae' is only distantly related to cultured AOA. It is an abundant symbiont that is solely responsible for nitrite formation from ammonia in I. basta that surprisingly does not harbour nitrite-oxidizing microbes. Furthermore, this AOA is equipped with an expanded set of extracellular subtilisin-like proteases, a metalloprotease unique among archaea, as well as a putative branched-chain amino acid ABC transporter. This repertoire is strongly indicative of a mixotrophic lifestyle and is (with slight variations) also found in other sponge-associated, but not in free-living AOA. We predict that this feature as well as an expanded and unique set of secreted serpins (protease inhibitors), a unique array of eukaryotic-like proteins, and a DNA-phosporothioation system, represent important adaptations of AOA to life within these ancient filter-feeding animals.


Assuntos
Amônia/metabolismo , Archaea/genética , Archaea/metabolismo , Poríferos/microbiologia , Animais , Archaea/isolamento & purificação , Crescimento Quimioautotrófico/fisiologia , Hibridização in Situ Fluorescente , Nitrificação/fisiologia , Nitritos/metabolismo , Oxirredução , Filogenia , Microbiologia do Solo
6.
Environ Microbiol ; 21(2): 584-602, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30548107

RESUMO

Lateral intrusions of oxygen caused by small-scale mixing are thought to shape microbial activity in marine redoxclines. To examine the response of prokaryotes to such mixing events we employed a shipboard mixing experiment in the euxinic central Baltic Sea: oxic, nitrate containing and sulfidic water samples without detectable oxygenized substances were incubated directly or after mixing. While nitrate, nitrite and ammonium concentrations stayed approximately constant in all incubations, we observed a decrease of sulfide after the contact with oxygen in the sulfide containing incubations. The transcription of marker genes from chemolithoauthotrophic key players including archaeal nitrifiers as well as gammaproteobacterial and campylobacterial autotrophic organisms that couple denitrification with sulfur-oxidation were followed at four time points within 8.5 h. The temporally contrasting transcriptional profiles of gammaproteobacterial and campylobacterial denitrifiers that depend on the same inorganic substrates pointed to a niche separation. Particular archaeal and campylobacterial marker genes involved in nitrification, denitrification and sulfur oxidation, which depend on oxidized substrates, were highly upregulated in the anaerobic sulfidic samples. We suggest that, despite the absence of measurable oxygenated compounds in the sulfidic water, frequent intermittent small-scale intrusions stimulate the permanent upregulation of genes involved in nitrification, denitrification and sulfur oxidation.


Assuntos
Archaea/metabolismo , Processos Autotróficos/fisiologia , Campylobacter/metabolismo , Gammaproteobacteria/metabolismo , Oxigênio/metabolismo , Água do Mar/microbiologia , Compostos de Amônio/metabolismo , Archaea/genética , Processos Autotróficos/genética , Países Bálticos , Campylobacter/genética , Desnitrificação/fisiologia , Gammaproteobacteria/genética , Nitratos/metabolismo , Nitrificação/fisiologia , Nitritos/metabolismo , Oxirredução , Oxigênio/análise , Sulfetos/metabolismo
7.
Environ Microbiol ; 21(11): 4092-4108, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31344308

RESUMO

The low temperature and elevated hydrostatic pressure in hadal trenches at water depths below 6000 m render sample collection difficult. Here, in situ hadal water microbial samples were collected from the Mariana Trench and analysed. The hadal microbial communities at different depths were revealed to be consistent and were dominated by heterotrophic Marinimicrobia. Thirty high-quality metagenome-assembled genomes (MAGs) were retrieved to represent the major hadal microbes affiliated with 12 prokaryotic phyla. Most of the MAGs were newly reported and probably derived from novel hadal inhabitants as exemplified by a potentially new candidate archaeal phylum in the DPANN superphylum. Metabolic reconstruction indicated that a great number of the MAGs participated in nitrogen and sulfur cycling, in which the nitrification process was driven sequentially by Thaumarchaeota and Nitrospirae and sulfur oxidization by Rhodospirillales in the Alphaproteobacteria class. Moreover, several groups of hadal microbes were revealed to be potential carbon monoxide oxidizers. Metatranscriptomic result highlighted the contribution of Chloroflexi in degrading recalcitrant dissolved organic matter and Marinimicrobia in extracellular protein decomposition. The present work provides an in-depth view on the hadal microbial communities regarding their endemism and element cycles.


Assuntos
Alphaproteobacteria/metabolismo , Archaea/metabolismo , Chloroflexi/metabolismo , Gammaproteobacteria/metabolismo , Alphaproteobacteria/classificação , Alphaproteobacteria/genética , Organismos Aquáticos/classificação , Organismos Aquáticos/genética , Organismos Aquáticos/metabolismo , Archaea/classificação , Archaea/genética , Chloroflexi/classificação , Chloroflexi/genética , Ecologia , Gammaproteobacteria/classificação , Gammaproteobacteria/genética , Processos Heterotróficos , Metagenoma , Microbiota/genética , Nitrificação/fisiologia , Oceano Pacífico
8.
Appl Microbiol Biotechnol ; 103(3): 1255-1265, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30539255

RESUMO

Anammox bacteria have attracted attention due to their apparent importance in saving energy and reducing organic chemical demands. Here, we report the detection and quantification of anammox bacteria with an improved primer set in a validation wastewater treatment plant. The improved primer set was shown to detect a broad range of anammox bacteria (47.3%) facilitating more accurate analyses of nitrogen removal mechanisms. Nitrogen removal efficiency and dominant nitrogen removal mechanisms were compared in the modification-Johannesburg (Mod-JHB), modified Ludzack-Ettinger (MLE) single-feed, and anoxic-oxic-anoxic-oxic (AOAO) step-feed modes. In the Mod-JHB configuration, simultaneous nitrification and denitrification (SND) and anammox were found to be responsible for more than 80% of total inorganic nitrogen (TIN) removal (98.5 ± 0.8% of TIN removal). Decrease of anoxic SRT from 5 to 2.5 days did not have any obvious effect on nitrogen removal or the abundance of functional microorganisms. Microbial batch tests demonstrated that both partial nitrification and dissimilatory nitrate reduction to ammonium (DNRA) were responsible for maintaining the anammox process. Short SRT (2 days) in the aerobic zone may explain the presence of partial nitrification. This study provides insights to the analysis of nitrogen removal mechanisms in validation wastewater treatment plants (WWTPs) aiming for high nitrogen removal efficiency.


Assuntos
Compostos de Amônio/metabolismo , Bactérias/metabolismo , Reatores Biológicos/microbiologia , Desnitrificação/fisiologia , Nitrificação/fisiologia , Esgotos/microbiologia , Purificação da Água/métodos , Anaerobiose/fisiologia , Bactérias/genética , Primers do DNA/genética , Cinética , Nitrogênio/metabolismo , Oxirredução , RNA Ribossômico 16S/genética
9.
Bioprocess Biosyst Eng ; 42(5): 853-866, 2019 May.
Artigo em Inglês | MEDLINE | ID: mdl-30963243

RESUMO

Excess inorganic nitrogen in water poses a severe threat to enviroment. Removal of inorganic nitrogen by heterotrophic nitrifying-aerobic denitrifying microorganism is supposed to be a promising and applicable technology only if the removal rate can be maintained sufficiently high in real wastewater under various conditions, such as high concentration of salt and wide range of different nitrogen concentrations. Here, a new heterotrophic nitrifying-aerobic denitrifying bacterium was isolated and named as Pseudomonas mendocina TJPU04, which removes NH4+-N, NO3--N and NO2--N with average rate of 4.69, 5.60, 4.99 mg/L/h, respectively. It also maintains high nitrogen removal efficiency over a wide range of nitrogen concentrations. When concentration of NH4+-N, NO3--N and NO2--N was up to 150, 150 and 50 mg/L, 98%, 93%, and 100% removal efficiency could be obtained, respectively, after 30-h incubation under sterile condition. When it was applied under non-sterile condition, the ammonia removal efficiency was slightly lower than that under sterile condition. However, the nitrate and nitrite removal efficiencies under non-sterile condition were significantly higher than those under sterile condition. Strain TJPU04 also showed efficient nitrogen removal performance in the presence of high concentration of salt and nitrogen. In addition, the removal efficiencies of NH4+-N, NO3--N and TN in real wastewater were 91%, 52%, and 75%, respectively. These results suggest that strain TJPU04 is a promising candidate for efficient removal of inorganic nitrogen in wastewater treatment.


Assuntos
Desnitrificação/fisiologia , Nitrificação/fisiologia , Pseudomonas mendocina/metabolismo , Amônia/metabolismo , Biodegradação Ambiental , Nitratos/metabolismo , Nitrogênio/metabolismo
10.
Water Sci Technol ; 79(7): 1397-1405, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31123239

RESUMO

The Marselisborg WWTP (Aarhus, Denmark) fed the mainstream nitrification/denitrification tanks with excess sludge from a sidestream DEMON tank for more than three years to investigate if anammox can supplement conventional nitrification/denitrification in a mainstream of a temperate region. To evaluate this long-term attempt, anammox and also denitrification rates were measured in activated sludge from the main- and sidestream at 10, 20 and 30 °C using 15N-labelling (stable isotope) experiments. The results show that anammox contributes by approximately 1% of the total nitrogen removal in the mainstream tanks and that anammox conversion rates there are approximately 800-900 times lower than in the DEMON. A distinct temperature dependence of both anammox and denitrification rates was also confirmed, however, results from different temperatures did not significantly alter relative shares, e.g. anammox rates in activated sludge from the nitrification/denitrification tanks are also negligible at 30 °C. This indicates that the anammox bacteria abundance in the nitrification/denitrification tanks is too low to play an important role and that an adaptation to lower temperatures had not occurred. Additional in situ measurements in the nitrification/denitrification tanks further revealed that full nitrification dominates over partial nitritation. Dominant nitritation-anammox is therefore excluded per se and also nitrite shunt activities are not particularly supported.


Assuntos
Reatores Biológicos , Eliminação de Resíduos Líquidos/métodos , Águas Residuárias , Biodegradação Ambiental , Desnitrificação , Dinamarca , Nitrificação/fisiologia , Nitrogênio , Oxirredução
11.
Appl Microbiol Biotechnol ; 102(7): 3399-3410, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29497800

RESUMO

Surface sediments are the inner source of contaminations in aquatic systems and usually maintain aerobic conditions. As the key participators of nitrification process, little is known about the activities and contributions of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in the surface sediments. In this study, we determined the net and potential nitrification rates and used 1-octyne as an AOB specific inhibitor to detect the contributions of AOA and AOB to nitrification in surface sediments of Danjiangkou reservoir, which is the water source area of the middle route of South-to-North Water Diversion Project in China. Quantitative PCR and Illumina high-throughput sequencing were used to evaluate the abundance and diversity of the amoA gene. The net and potential nitrification rates ranged from 0.42 to 1.93 and 2.06 to 8.79 mg N kg-1 dry sediments d-1, respectively. AOB dominated in both net and potential nitrification, whose contribution accounted for 52.7-78.6% and 59.9-88.1%, respectively. The cell-specific ammonia oxidation rate calculation also revealed the cell-specific rates of AOB were higher than that of AOA. The Spearman's rank correlation analysis suggested that ammonia accumulation led to the AOB predominant role in net nitrification activity, and AOB abundance played the key role in potential nitrification activity. Furthermore, phylogenetic analysis suggested AOB were predominantly characterized by the Nitrosospira cluster, while AOA by the Nitrososphaera and Nitrososphaera sister clusters. This study will help us to better understand the contributions and characteristics of AOA and AOB in aquatic sediments and provide improved strategies for nitrogen control in large reservoirs.


Assuntos
Amônia/metabolismo , Archaea/metabolismo , Bactérias/metabolismo , Sedimentos Geológicos/microbiologia , Nitrificação/fisiologia , Microbiologia do Solo , Archaea/classificação , Bactérias/classificação , China , Oxirredução , Filogenia
12.
Appl Microbiol Biotechnol ; 102(21): 9389-9398, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30264339

RESUMO

Constructed wetland (CW) is popular in wastewater treatment for its prominent advantage of low construction and operation cost. However, the nitrogen removal in conventional CW is usually limited by the low dissolved oxygen (DO) and insufficient electron donor. This paper investigated the nitrogen removal performance and mechanisms in the poly (butylenes succinate)-based CW (PBS-CW) while treating ammonia wastewater under different DO levels. The average DO contents in limited-aeration and full-aeration phases were 1.68 mg L-1 and 5.71 mg L-1, respectively. Results indicated that, with the ammonia nitrogen loading rate of 25 g N m-3 day-1, total nitrogen removal ratios in the PBS-CW under the limited-aeration and full-aeration phases were 72% and 99%, respectively. Combined analyses revealed that simultaneous nitrification and denitrification (SND) via nitrite/nitrate were the main microbial nitrogen removal pathways in the aeration phase of the PBS-CW (> 89%). The microbial carrier of biodegradable material was believed to play a significant role in prompting SND performance while dealing with low C/N wastewater. Due to the coexistence of micro-anaerobic zone and carbon supply inside the coated biofilm, the high DO level in the PBS-CW increased the abundance of the nitrifying bacteria (amoA and nxrA), denitrifying bacteria (narG, nirK, nirS, and nosZ), and even anammox bacteria (anammox 16s rRNA). These features are beneficial to many microbial processes which require the simultaneous aerobic, anoxic, and anaerobic environment.


Assuntos
Alcenos/metabolismo , Amônia/metabolismo , Nitrogênio/metabolismo , Oxigênio/metabolismo , Ácido Succínico/metabolismo , Águas Residuárias/microbiologia , Bactérias/metabolismo , Reatores Biológicos/microbiologia , Carbono/metabolismo , Desnitrificação/fisiologia , Nitratos/metabolismo , Nitrificação/fisiologia , Nitritos/metabolismo , Eliminação de Resíduos Líquidos/métodos , Purificação da Água/métodos , Áreas Alagadas
13.
Bioprocess Biosyst Eng ; 41(8): 1115-1120, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-29679130

RESUMO

This study assessed the simultaneous nitrification and denitrification processes and remaining organic matter removal from anaerobic reactor effluent treating wastewater in a single reactor. A structured-bed reactor, with polyurethane foam as support media, was subjected to intermittent aeration and effluent recirculation. Aerated/non-aerated periods varied in the range of 2/1-1/3 h. The chemical oxygen demand (COD) in the effluent remained between 26 and 42 mg L-1 throughout all the aeration conditions. Aeration periods of 1/2 h removed 80 and 26% of Total Kjeldahl Nitrogen and Total Nitrogen, respectively. A low solid production was observed during the 300 days of operation, resulting in a solid retention time of 139 days. The results indicate that the non-aerated periods generated alkalinity that favored nitrification, maintaining low COD concentrations in the effluent. The structured bed reactor presented a low solid production and effluent loss below 20 mgSSV L-1, similar to concentrations obtained in secondary decanters.


Assuntos
Reatores Biológicos , Nitrificação/fisiologia , Consumo de Oxigênio/fisiologia , Esgotos/microbiologia , Microbiologia da Água
14.
Environ Microbiol ; 19(12): 4978-4992, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29194965

RESUMO

The diazotrophic cyanobacterium, Trichodesmium, is an integral component of the marine nitrogen cycle and contributes significant amounts of new nitrogen to oligotrophic, tropical/subtropical ocean surface waters. Trichodesmium forms macroscopic, fusiform (tufts), spherical (puffs) and raft-like colonies that provide a pseudobenthic habitat for a host of other organisms including marine invertebrates, microeukaryotes and numerous other microbes. The diversity and activity of denitrifying bacteria found in association with the colonies was interrogated using a series of molecular-based methodologies targeting the gene encoding the terminal step in the denitrification pathway, nitrous oxide reductase (nosZ). Trichodesmium spp. sampled from geographically isolated ocean provinces (the Atlantic Ocean, the Red Sea and the Indian Ocean) were shown to harbor highly similar, taxonomically related communities of denitrifiers whose members are affiliated with the Roseobacter clade within the Rhodobacteraceae (Alphaproteobacteria). These organisms were actively expressing nosZ in samples taken from the mid-Atlantic Ocean and Red Sea implying that Trichodesmium colonies are potential sites of nitrous oxide consumption and perhaps earlier steps in the denitrification pathway also. It is proposed that coupled nitrification of newly fixed N is the most likely source of nitrogen oxides supporting nitrous oxide cycling within Trichodesmium colonies.


Assuntos
Ciclo do Nitrogênio/fisiologia , Fixação de Nitrogênio/fisiologia , Nitrogênio/metabolismo , Óxido Nitroso/metabolismo , Rhodobacteraceae/metabolismo , Trichodesmium/metabolismo , Organismos Aquáticos/metabolismo , Oceano Atlântico , Desnitrificação , Ecossistema , Oceano Índico , Nitrificação/fisiologia , Oxirredutases/genética , Trichodesmium/genética
15.
Environ Microbiol ; 19(6): 2119-2132, 2017 06.
Artigo em Inglês | MEDLINE | ID: mdl-28142226

RESUMO

Global climate is, in part, regulated by the effect of microbial processes on biogeochemical cycling. The nitrogen cycle, in particular, is driven by microorganisms responsible for the fixation and loss of nitrogen, and the reduction-oxidation transformations of bio-available nitrogen. Within marine systems, nitrogen availability is often the limiting factor in the growth of autotrophic organisms, intrinsically linking the nitrogen and carbon cycles. In order to elucidate the state of these cycles in the past, and help envisage present and future variability, it is essential to understand the specific microbial processes responsible for transforming bio-available nitrogen species. As most microorganisms are soft-bodied and seldom leave behind physical fossils in the sedimentary record, recalcitrant lipid biomarkers are used to unravel microbial processes in the geological past. This review emphasises the recent advances in marine nitrogen cycle lipid biomarkers, underlines the missing links still needed to fully elucidate past shifts in this biogeochemically-important cycle, and provides examples of biomarker applications in the geological past.


Assuntos
Cianobactérias/metabolismo , Desnitrificação/fisiologia , Lipídeos/fisiologia , Nitrificação/fisiologia , Fixação de Nitrogênio/fisiologia , Bactérias Fixadoras de Nitrogênio/metabolismo , Biomarcadores , Clima , Nitrogênio/metabolismo , Oxirredução
16.
Environ Microbiol ; 19(12): 4939-4952, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29098760

RESUMO

Obligate acidophilic members of the thaumarchaeotal genus Candidatus Nitrosotalea play an important role in nitrification in acidic soils, but their evolutionary and physiological adaptations to acidic environments are still poorly understood, with only a single member of this genus (Ca. N. devanaterra) having its genome sequenced. In this study, we sequenced the genomes of two additional cultured Ca. Nitrosotalea strains, extracted an almost complete Ca. Nitrosotalea metagenome-assembled genome from an acidic fen, and performed comparative genomics of the four Ca. Nitrosotalea genomes with 19 other archaeal ammonia oxidiser genomes. Average nucleotide and amino acid identities revealed that the four Ca. Nitrosotalea strains represent separate species within the genus. The four Ca. Nitrosotalea genomes contained a core set of 103 orthologous gene families absent from all other ammonia-oxidizing archaea and, for most of these gene families, expression could be demonstrated in laboratory culture or the environment via proteomic or metatranscriptomic analyses respectively. Phylogenetic analyses indicated that four of these core gene families were acquired by the Ca. Nitrosotalea common ancestor via horizontal gene transfer from acidophilic representatives of Euryarchaeota. We hypothesize that gene exchange with these acidophiles contributed to the competitive success of the Ca. Nitrosotalea lineage in acidic environments.


Assuntos
Amônia/metabolismo , Euryarchaeota/genética , Euryarchaeota/metabolismo , Genoma Arqueal/genética , Nitrificação/fisiologia , Sequência de Bases , Evolução Biológica , DNA Arqueal/genética , Transferência Genética Horizontal , Genômica , Oxirredução , Filogenia , Proteômica , Análise de Sequência de DNA , Solo/química , Microbiologia do Solo
17.
Appl Microbiol Biotechnol ; 101(4): 1653-1660, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27826723

RESUMO

Wastewater treatment under low dissolved oxygen (DO) conditions is promising for its low energy consumption. However, the removal process of some organic micropollutants, such as triclosan (TCS), could be inhibited under anaerobic conditions. So, it is worth investigating the TCS removal performance at low-oxygen condition. In this study, simultaneous nitrification and denitrification (SND) process, with DO ranging from 0.30 to 0.80 mg L-1, was chosen to investigate. Results showed that the water quality of the effluent was deteriorated after TCS addition at the beginning, with removal efficiency of NH4+-N dropped from almost 100 ± 0.70 to 88.30 ± 0.98% and COD decreased from 95.15 ± 1.55 to 65.81 ± 2.42 %. However, the performance recovered from the 3rd day and almost stabilized on the 14th day with the removal efficiencies of NH4+-N were over 98.00 ± 0.60 %, and COD was above 94.00 ± 1.70 % in effluent. Besides, TCS removal efficiencies were more than 93.00 %, and the contributions for TCS removal by the water effluent, sludge sorption, and other effects including biodegradation were 6.46 ± 2.25, 16.27 ± 3.30, and 77.27 ± 4.45 %, respectively. Although the results of absolute abundances of related genes showed no difference (P > 0.05), Illumina MiSeq sequencing analysis presented the variation of microbial community after TCS addition, in which T-45 had the highest Shannon and Simpson diversity index, followed by T-0 and T-2. Relative abundances of alpha and beta-Proteobacteria, which were related to TCS biodegradation, were increased. Compared with Bacteroidetes in T-0, the abundance of Bacteroidetes took up more than 15.6 % in T-45, which should play a more important role under low-oxygen conditions with TCS addition.


Assuntos
Triclosan/metabolismo , Desnitrificação/fisiologia , Nitrificação/fisiologia , Oxigênio/metabolismo
18.
Lett Appl Microbiol ; 65(1): 66-72, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28418627

RESUMO

Biological treatment represents a key step in nutrient removal from wastewater. Until now these process has mainly been considered prokaryotic, with the interactions between prokaryotes and eukaryotes not being properly explored. We therefore investigated the co-occurrence of eukaryotes and prokaryotes in biological nitrogen removal biofilms. We found that biofilms in the nitrifying reactor contained the highest diversity and abundance of both prokaryotes and eukaryotes, with nearly three times higher prokaryote species richness than for the denitrifying reactor. The positive associations between eukaryote abundance and prokaryote diversity could potentially be explained by mutualism - and/or predator/prey interactions. Further mechanistic insight, however, is needed to determine the main diversifying mechanisms. In summary, eukaryote and prokaryote interactions seem to play a fundamental yet underexplored role in biological wastewater treatment. SIGNIFICANCE AND IMPACT OF THE STUDY: Eukaryote and prokaryote interactions may play an important role in wastewater treatment. This study found that prokaryote species richness was nearly three times higher in the aerobe nitrification than in an anaerobe denitrification reactor, coinciding with the highest level of eukaryotes. This knowledge can be important in process control, and potentially in the development of novel approaches based on nitrate accumulating denitrifying eukaryotes.


Assuntos
Biofilmes/crescimento & desenvolvimento , Oligoquetos/crescimento & desenvolvimento , Proteobactérias/isolamento & purificação , Rhizaria/isolamento & purificação , Águas Residuárias/microbiologia , Águas Residuárias/parasitologia , Animais , Reatores Biológicos/microbiologia , Reatores Biológicos/parasitologia , Nitrificação/fisiologia , Nitrogênio/metabolismo
19.
Water Sci Technol ; 75(12): 2900-2907, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28659530

RESUMO

Thiourea is a typical nitrification inhibitor that shows a strong inhibitory effect against the biological nitrification process. The 50% inhibitory concentration (IC50) of thiourea on nitrification was determined to be 0.088 mg g VSS-1, and nitrifiers recovered from the thiourea inhibition after it was completely degraded. The thiourea-degrading ability of the sludge system was improved to 3.06 mg gVSS-1 h-1 through cultivation of thiourea-degrading bacteria by stepwise increasing the influent thiourea concentration. The dominant thiourea-degrading bacteria strain that used thiourea as the sole carbon and nitrogen source in the sludge system was identified as Pseudomonas sp. NCIMB. The results of this study will facilitate further research of the biodegradation characteristics of thiourea and similar pollutants.


Assuntos
Nitrificação/fisiologia , Tioureia/metabolismo , Eliminação de Resíduos Líquidos/métodos , Biodegradação Ambiental , Reatores Biológicos , Nitrificação/efeitos dos fármacos , Nitrogênio , Esgotos
20.
Appl Microbiol Biotechnol ; 100(17): 7699-711, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27170321

RESUMO

The goal of this study was to investigate the effect of transmembrane gas pressure (P g) on the specific ammonium removal rate in a membrane-aerated biofilm reactor (MABR). Our experimental results show that the specific ammonium removal rate increased from 4.98 to 9.26 gN m(-2) day(-1) when P g increased from 2 to 20 kPa in an MABR with a biofilm thickness of approximately 600 µm. However, this improvement was not linear; there was a threshold of P g separating the stronger and weaker effects of P g. The ammonium removal rate was improved less significantly when P g was over the threshold, indicating that there is an optimal threshold of P g for maximizing ammonium removal in an MABR. The change in oxygen penetration depth (d p) is less sensitive to P g in the ammonia-oxidizing active layer than in the inactive layer in membrane-aerated biofilm. The location of the P g threshold is at the same point as the thickness of the active layer on the curve of d p versus P g; thus, the active layer thickness and the optimal P g can be determined on the basis of the changes in the slope of d p to P g.


Assuntos
Compostos de Amônio/metabolismo , Reatores Biológicos , Membranas Artificiais , Oxigênio/metabolismo , Eliminação de Resíduos Líquidos/métodos , Purificação da Água/métodos , Biofilmes , Nitrificação/fisiologia , Águas Residuárias/química
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