Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 67
Filtrar
1.
Biophys J ; 2024 Jun 26.
Artigo em Inglês | MEDLINE | ID: mdl-38937973

RESUMO

Cytochromes c'-α are nitric oxide (NO)-binding heme proteins derived from bacteria that can thrive in a wide range of temperature environments. Studies of mesophilic Alcaligenes xylosoxidans cytochrome c'-α (AxCP-α) have revealed an unusual NO-binding mechanism involving both heme faces, in which NO first binds to form a distal hexa-coordinate Fe(II)-NO (6cNO) intermediate and then displaces the proximal His to form a proximal penta-coordinate Fe(II)-NO (5cNO) final product. Here we characterize a thermally stable cytochrome c'-α from thermophilic Hydrogenophilus thermoluteolus (PhCP-α) to understand how protein thermal stability affects NO binding. Electron paramagnetic and resonance Raman spectroscopies reveal the formation of a PhCP-α 5cNO product, with time-resolved (stopped-flow) UV-visible absorbance indicating the involvement of a 6cNO intermediate. Relative to AxCP-α, the rates of 6cNO and 5cNO formation in PhCP-α are ∼11-fold and ∼13-fold lower, respectively. Notably, X-ray crystal structures of PhCP-α in the presence and absence of NO suggest that the sluggish formation of the proximal 5cNO product results from conformational rigidity: the Arg-132 residue (adjacent to the proximal His ligand) is held in place by a salt bridge between Arg-75 and Glu-135 (an interaction not present in AxCP-α or a psychrophilic counterpart). Overall, our data provide fresh insights into structural factors controlling NO binding in heme proteins, including 5cNO complexes relevant to eukaryotic NO sensors.

2.
J Biol Chem ; 299(6): 104742, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-37100286

RESUMO

The structural basis by which gas-binding heme proteins control their interactions with NO, CO, and O2 is fundamental to enzymology, biotechnology, and human health. Cytochromes c' (cyts c') are a group of putative NO-binding heme proteins that fall into two families: the well-characterized four alpha helix bundle fold (cyts c'-α) and an unrelated family with a large beta-sheet fold (cyts c'-ß) resembling that of cytochromes P460. A recent structure of cyt c'-ß from Methylococcus capsulatus Bath revealed two heme pocket phenylalanine residues (Phe 32 and Phe 61) positioned near the distal gas-binding site. This feature, dubbed the "Phe cap," is highly conserved within the sequences of other cyts c'-ß but is absent in their close homologs, the hydroxylamine-oxidizing cytochromes P460, although some do contain a single Phe residue. Here, we report an integrated structural, spectroscopic, and kinetic characterization of cyt c'-ß from Methylococcus capsulatus Bath complexes with diatomic gases, focusing on the interaction of the Phe cap with NO and CO. Significantly, crystallographic and resonance Raman data show that orientation of the electron-rich aromatic ring face of Phe 32 toward distally bound NO or CO is associated with weakened backbonding and higher off rates. Moreover, we propose that an aromatic quadrupole also contributes to the unusually weak backbonding reported for some heme-based gas sensors, including the mammalian NO sensor, soluble guanylate cyclase. Collectively, this study sheds light on the influence of highly conserved distal Phe residues on heme-gas complexes of cytochrome c'-ß, including the potential for aromatic quadrupoles to modulate NO and CO binding in other heme proteins.


Assuntos
Citocromos c' , Methylococcus capsulatus , Humanos , Citocromos c'/química , Gases , Heme/metabolismo , Hemeproteínas/genética , Hemeproteínas/metabolismo , Methylococcus capsulatus/química
3.
Int J Mol Sci ; 25(12)2024 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-38928500

RESUMO

Hell's Gate globin-I (HGb-I) is a thermally stable globin from the aerobic methanotroph Methylacidiphilium infernorum. Here we report that HGb-I interacts with lipids stoichiometrically to induce structural changes in the heme pocket, changing the heme iron distal ligation coordination from hexacoordinate to pentacoordinate. Such changes in heme geometry have only been previously reported for cytochrome c and cytoglobin, linked to apoptosis regulation and enhanced lipid peroxidation activity, respectively. However, unlike cytoglobin and cytochrome c, the heme iron of HGb-I is altered by lipids in ferrous as well as ferric oxidation states. The apparent affinity for lipids in this thermally stable globin is highly pH-dependent but essentially temperature-independent within the range of 20-60 °C. We propose a mechanism to explain these observations, in which lipid binding and stability of the distal endogenous ligand are juxtaposed as a function of temperature. Additionally, we propose that these coupled equilibria may constitute a mechanism through which this acidophilic thermophile senses the pH of its environment.


Assuntos
Temperatura , Concentração de Íons de Hidrogênio , Globinas/química , Globinas/metabolismo , Lipídeos/química , Heme/metabolismo , Heme/química , Conformação Proteica , Modelos Moleculares , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo
4.
Angew Chem Int Ed Engl ; 63(16): e202401379, 2024 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-38407997

RESUMO

Ferritins are multimeric cage-forming proteins that play a crucial role in cellular iron homeostasis. All H-chain-type ferritins harbour a diiron site, the ferroxidase centre, at the centre of a 4 α-helical bundle, but bacterioferritins are unique in also binding 12 hemes per 24 meric assembly. The ferroxidase centre is known to be required for the rapid oxidation of Fe2+ during deposition of an immobilised ferric mineral core within the protein's hollow interior. In contrast, the heme of bacterioferritin is required for the efficient reduction of the mineral core during iron release, but has little effect on the rate of either oxidation or mineralisation of iron. Thus, the current view is that these two cofactors function in iron uptake and release, respectively, with no functional overlap. However, rapid electron transfer between the heme and ferroxidase centre of bacterioferritin from Escherichia coli was recently demonstrated, suggesting that the two cofactors may be functionally connected. Here we report absorbance and (magnetic) circular dichroism spectroscopies, together with in vitro assays of iron-release kinetics, which demonstrate that the ferroxidase centre plays an important role in the reductive mobilisation of the bacterioferritin mineral core, which is dependent on the heme-ferroxidase centre electron transfer pathway.


Assuntos
Ceruloplasmina , Ferro , Ferro/química , Ceruloplasmina/química , Escherichia coli/metabolismo , Ferritinas/química , Proteínas de Bactérias/metabolismo , Grupo dos Citocromos b/química , Minerais , Oxirredução , Heme/metabolismo
5.
Proc Natl Acad Sci U S A ; 116(6): 2058-2067, 2019 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-30659147

RESUMO

The gene encoding the cyanobacterial ferritin SynFtn is up-regulated in response to copper stress. Here, we show that, while SynFtn does not interact directly with copper, it is highly unusual in several ways. First, its catalytic diiron ferroxidase center is unlike those of all other characterized prokaryotic ferritins and instead resembles an animal H-chain ferritin center. Second, as demonstrated by kinetic, spectroscopic, and high-resolution X-ray crystallographic data, reaction of O2 with the di-Fe2+ center results in a direct, one-electron oxidation to a mixed-valent Fe2+/Fe3+ form. Iron-O2 chemistry of this type is currently unknown among the growing family of proteins that bind a diiron site within a four α-helical bundle in general and ferritins in particular. The mixed-valent form, which slowly oxidized to the more usual di-Fe3+ form, is an intermediate that is continually generated during mineralization. Peroxide, rather than superoxide, is shown to be the product of O2 reduction, implying that ferroxidase centers function in pairs via long-range electron transfer through the protein resulting in reduction of O2 bound at only one of the centers. We show that electron transfer is mediated by the transient formation of a radical on Tyr40, which lies ∼4 Å from the diiron center. As well as demonstrating an expansion of the iron-O2 chemistry known to occur in nature, these data are also highly relevant to the question of whether all ferritins mineralize iron via a common mechanism, providing unequivocal proof that they do not.


Assuntos
Compostos Férricos/química , Compostos Ferrosos/química , Oxigênio/química , Peróxidos/química , Proteínas/química , Ceruloplasmina/química , Transporte de Elétrons , Ferritinas/química , Ferro/química , Modelos Moleculares , Conformação Molecular , Oxirredução , Relação Estrutura-Atividade
6.
Proc Natl Acad Sci U S A ; 116(40): 19911-19916, 2019 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-31527239

RESUMO

The circadian clock is an endogenous time-keeping system that is ubiquitous in animals and plants as well as some bacteria. In mammals, the clock regulates the sleep-wake cycle via 2 basic helix-loop-helix PER-ARNT-SIM (bHLH-PAS) domain proteins-CLOCK and BMAL1. There is emerging evidence to suggest that heme affects circadian control, through binding of heme to various circadian proteins, but the mechanisms of regulation are largely unknown. In this work we examine the interaction of heme with human CLOCK (hCLOCK). We present a crystal structure for the PAS-A domain of hCLOCK, and we examine heme binding to the PAS-A and PAS-B domains. UV-visible and electron paramagnetic resonance spectroscopies are consistent with a bis-histidine ligated heme species in solution in the oxidized (ferric) PAS-A protein, and by mutagenesis we identify His144 as a ligand to the heme. There is evidence for flexibility in the heme pocket, which may give rise to an additional Cys axial ligand at 20K (His/Cys coordination). Using DNA binding assays, we demonstrate that heme disrupts binding of CLOCK to its E-box DNA target. Evidence is presented for a conformationally mobile protein framework, which is linked to changes in heme ligation and which has the capacity to affect binding to the E-box. Within the hCLOCK structural framework, this would provide a mechanism for heme-dependent transcriptional regulation.


Assuntos
Proteínas CLOCK/química , Elementos E-Box , Heme/química , Transdução de Sinais , Fatores de Transcrição ARNTL/química , Fatores de Transcrição Hélice-Alça-Hélice Básicos/química , Catálise , Relógios Circadianos , Criptocromos/química , DNA/química , Elétrons , Escherichia coli/metabolismo , Humanos , Ligantes , Proteínas do Tecido Nervoso/química , Oxigênio/química , Proteínas Circadianas Period/química , Ligação Proteica , Multimerização Proteica , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Transcrição Gênica
7.
J Biol Inorg Chem ; 26(7): 743-761, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34477969

RESUMO

Structure determination of proteins and enzymes by X-ray crystallography remains the most widely used approach to complement functional and mechanistic studies. Capturing the structures of intact redox states in metalloenzymes is critical for assigning the chemistry carried out by the metal in the catalytic cycle. Unfortunately, X-rays interact with protein crystals to generate solvated photoelectrons that can reduce redox active metals and hence change the coordination geometry and the coupled protein structure. Approaches to mitigate such site-specific radiation damage continue to be developed, but nevertheless application of such approaches to metalloenzymes in combination with mechanistic studies are often overlooked. In this review, we summarize our recent structural and kinetic studies on a set of three heme peroxidases found in the bacterium Streptomyces lividans that each belong to the dye decolourizing peroxidase (DyP) superfamily. Kinetically, each of these DyPs has a distinct reactivity with hydrogen peroxide. Through a combination of low dose synchrotron X-ray crystallography and zero dose serial femtosecond X-ray crystallography using an X-ray free electron laser (XFEL), high-resolution structures with unambiguous redox state assignment of the ferric and ferryl (FeIV = O) heme species have been obtained. Experiments using stopped-flow kinetics, solvent-isotope exchange and site-directed mutagenesis with this set of redox state validated DyP structures have provided the first comprehensive kinetic and structural framework for how DyPs can modulate their distal heme pocket Asp/Arg dyad to use either the Asp or the Arg to facilitate proton transfer and rate enhancement of peroxide heterolysis.


Assuntos
Ácido Aspártico , Peroxidases , Arginina/metabolismo , Cristalografia por Raios X , Cinética , Oxirredução , Peroxidases/metabolismo , Raios X
8.
Angew Chem Int Ed Engl ; 60(15): 8376-8379, 2021 04 06.
Artigo em Inglês | MEDLINE | ID: mdl-33460502

RESUMO

The iron redox cycle in ferritins is not completely understood. Bacterioferritins are distinct from other ferritins in that they contain haem groups. It is acknowledged that the two iron motifs in bacterioferritins, the di-nuclear ferroxidase centre and the haem B group, play key roles in two opposing processes, iron sequestration and iron mobilisation, respectively, and the two redox processes are independent. Herein, we show that in Escherichia coli bacterioferritin, there is an electron transfer pathway from the haem to the ferroxidase centre suggesting a new role(s) haem might play in bacterioferritins.


Assuntos
Proteínas de Bactérias/metabolismo , Ceruloplasmina/metabolismo , Grupo dos Citocromos b/metabolismo , Ferritinas/metabolismo , Heme/metabolismo , Proteínas de Bactérias/química , Ceruloplasmina/química , Grupo dos Citocromos b/química , Transporte de Elétrons , Escherichia coli/química , Escherichia coli/metabolismo , Ferritinas/química , Heme/química
9.
Angew Chem Int Ed Engl ; 60(15): 8361-8369, 2021 04 06.
Artigo em Inglês | MEDLINE | ID: mdl-33482043

RESUMO

Both O2 and H2 O2 can oxidize iron at the ferroxidase center (FC) of Escherichia coli bacterioferritin (EcBfr) but mechanistic details of the two reactions need clarification. UV/Vis, EPR, and Mössbauer spectroscopies have been used to follow the reactions when apo-EcBfr, pre-loaded anaerobically with Fe2+ , was exposed to O2 or H2 O2 . We show that O2 binds di-Fe2+ FC reversibly, two Fe2+ ions are oxidized in concert and a H2 O2 molecule is formed and released to the solution. This peroxide molecule further oxidizes another di-Fe2+ FC, at a rate circa 1000 faster than O2 , ensuring an overall 1:4 stoichiometry of iron oxidation by O2 . Initially formed Fe3+ can further react with H2 O2 (producing protein bound radicals) but relaxes within seconds to an H2 O2 -unreactive di-Fe3+ form. The data obtained suggest that the primary role of EcBfr in vivo may be to detoxify H2 O2 rather than sequester iron.


Assuntos
Proteínas de Bactérias/metabolismo , Ceruloplasmina/metabolismo , Grupo dos Citocromos b/metabolismo , Escherichia coli/química , Ferritinas/metabolismo , Peróxido de Hidrogênio/metabolismo , Ferro/metabolismo , Oxigênio/metabolismo , Proteínas de Bactérias/química , Ceruloplasmina/química , Grupo dos Citocromos b/química , Escherichia coli/metabolismo , Ferritinas/química , Peróxido de Hidrogênio/química , Ferro/química , Modelos Moleculares , Oxirredução , Oxigênio/química
10.
Angew Chem Int Ed Engl ; 59(48): 21656-21662, 2020 11 23.
Artigo em Inglês | MEDLINE | ID: mdl-32780931

RESUMO

Obtaining structures of intact redox states of metal centers derived from zero dose X-ray crystallography can advance our mechanistic understanding of metalloenzymes. In dye-decolorising heme peroxidases (DyPs), controversy exists regarding the mechanistic role of the distal heme residues aspartate and arginine in the heterolysis of peroxide to form the catalytic intermediate compound I (FeIV =O and a porphyrin cation radical). Using serial femtosecond X-ray crystallography (SFX), we have determined the pristine structures of the FeIII and FeIV =O redox states of a B-type DyP. These structures reveal a water-free distal heme site that, together with the presence of an asparagine, imply the use of the distal arginine as a catalytic base. A combination of mutagenesis and kinetic studies corroborate such a role. Our SFX approach thus provides unique insight into how the distal heme site of DyPs can be tuned to select aspartate or arginine for the rate enhancement of peroxide heterolysis.


Assuntos
Arginina/metabolismo , Corantes/metabolismo , Heme/metabolismo , Compostos de Ferro/metabolismo , Oxigênio/metabolismo , Peroxidase/metabolismo , Arginina/química , Biocatálise , Corantes/química , Cristalografia por Raios X , Heme/química , Compostos de Ferro/química , Modelos Moleculares , Oxirredução , Oxigênio/química , Peroxidase/química , Streptomyces lividans/enzimologia
11.
Chemistry ; 25(24): 6141-6153, 2019 Apr 26.
Artigo em Inglês | MEDLINE | ID: mdl-30945782

RESUMO

Dye decolouring peroxidases (DyPs) are the most recent class of heme peroxidase to be discovered. On reacting with H2 O2 , DyPs form a high-valent iron(IV)-oxo species and a porphyrin radical (Compound I) followed by stepwise oxidation of an organic substrate. In the absence of substrate, the ferryl species decays to form transient protein-bound radicals on redox active amino acids. Identification of radical sites in DyPs has implications for their oxidative mechanism with substrate. Using a DyP from Streptomyces lividans, referred to as DtpA, which displays low reactivity towards synthetic dyes, activation with H2 O2 was explored. A Compound I EPR spectrum was detected, which in the absence of substrate decays to a protein-bound radical EPR signal. Using a newly developed version of the Tyrosyl Radical Spectra Simulation Algorithm, the radical EPR signal was shown to arise from a pristine tyrosyl radical and not a mixed Trp/Tyr radical that has been widely reported in DyP members exhibiting high activity with synthetic dyes. The radical site was identified as Tyr374, with kinetic studies inferring that although Tyr374 is not on the electron-transfer pathway from the dye RB19, its replacement with a Phe does severely compromise activity with other organic substrates. These findings hint at the possibility that alternative electron-transfer pathways for substrate oxidation are operative within the DyP family. In this context, a role for a highly conserved aromatic dyad motif is discussed.


Assuntos
Corantes/química , Radicais Livres/química , Peroxidases/química , Algoritmos , Motivos de Aminoácidos , Biocatálise , Simulação por Computador , Cinética , Modelos Moleculares , Oxirredução , Conformação Proteica , Streptomyces lividans/enzimologia
12.
Biochemistry ; 57(29): 4276-4288, 2018 07 24.
Artigo em Inglês | MEDLINE | ID: mdl-29949346

RESUMO

Naturally occurring mutations found in one of the two Ω-loop substructures in human cytochrome c are associated with low blood platelet count (thrombocytopenia). Both Ω-loops participate in the formation of conformers associated with cytochrome c peroxidase activity and apoptotic function. At alkaline pH values, the Met80 ligand to the ferric heme iron dissociates, and a lysine residue in the 71-85 Ω-loop coordinates to the iron. The alkaline isomerization has been the focus of extensive kinetic studies, and it is established that a deprotonation triggers the release of the Met80 ligand (p Ktrigger). A second deprotonation stabilizes a pentacoordinate heme form (p Ka2). In this study, site-directed variants at the 41 and 48 positions in the 40-57 Ω-loop and at the 81 and 83 positions in the 71-85 Ω-loop reveal that conformational transitions in the 71-85 Ω-loop, leading to the alkaline or peroxidatic conformers, are controlled by the 40-57 Ω-loop. We find that the variants causing thrombocytopenia, G41S and Y48H, lower the p Ktrigger and increase p Ka2. Our results are presented in a mechanistic framework, depicted by a cube, that accounts for the pH dependencies of the equilibrium and kinetic parameters governing the alkaline transition of the native protein and Ω-loop variants. The data are most consistent with the trigger for Met80 replacement by a lysine being a deprotonation within a hydrogen bonded unit that links the two Ω-loops rather than an individual group. Such a proposal aligns with the entatic contribution made by the same unit in controlling the Met80-Fe(III) bond strength.


Assuntos
Álcalis/química , Citocromos c/química , Citocromos c/genética , Mutação Puntual , Trombocitopenia/genética , Citocromos c/metabolismo , Humanos , Concentração de Íons de Hidrogênio , Isomerismo , Cinética , Modelos Moleculares , Peroxidase/química , Peroxidase/genética , Peroxidase/metabolismo , Conformação Proteica , Desnaturação Proteica , Estabilidade Proteica , Trombocitopenia/metabolismo
13.
Biochim Biophys Acta Proteins Proteom ; 1866(2): 230-241, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29128676

RESUMO

The coelomic hemoglobin of Amphitrite ornata, termed dehaloperoxidase (DHP), is the first known multifunctional catalytic globin to possess biologically-relevant peroxidase and peroxygenase activities. Although the two isoenzymes of DHP, A and B, differ in sequence by only 5 amino acids out of 137 residues, DHP B consistently exhibits a greater activity than isoenzyme A. To delineate the contributions of each amino acid substitution to the activity of either isoenzyme, the substitutions of the five amino acids were systematically investigated, individually and in combination, using 22 mutants. Biochemical assays and mechanistic studies demonstrated that the mutants that only contained the I9L substitution showed increased i) kcat values (peroxidase activity), ii) 5-Br-indole conversion and binding affinity (peroxygenase activity), and iii) rate of Compound ES formation (enzyme activation). Whereas the X-ray structures of the oxyferrous forms of DHP B (L9I) (1.96Å), DHP A (I9L) (1.20Å), and WT DHP B (1.81Å) showed no significant differences, UV-visible spectroscopy (ASoret/A380 ratio) revealed that the I9L substitution increased the 5-coordinate high-spin heme population characterized by the "open" conformation (i.e., distal histidine swung out of the pocket), which likely favors substrate binding. The positioning of the distal histidine closer to the heme cofactor in the solution state also appears to facilitate activation of DHP via the Compound ES intermediate. Taken together, the studies undertaken here shed light on the structure-function relationship in dehaloperoxidase, but also help to establish the foundation for understanding how enzymatic activity can be tuned in isoenzymes of a multifunctional catalytic globin.


Assuntos
Hemoglobinas/química , Peroxidase/química , Poliquetos/enzimologia , Substituição de Aminoácidos , Animais , Cristalografia por Raios X , Hemoglobinas/genética , Hemoglobinas/metabolismo , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Mutação de Sentido Incorreto , Peroxidase/genética , Peroxidase/metabolismo , Poliquetos/genética , Domínios Proteicos
14.
Biochem J ; 474(5): 809-825, 2017 02 20.
Artigo em Inglês | MEDLINE | ID: mdl-28093470

RESUMO

GlxA from Streptomyces lividans is a mononuclear copper-radical oxidase and a member of the auxiliary activity family 5 (AA5). Its domain organisation and low sequence homology make it a distinct member of the AA5 family in which the fungal galactose 6-oxidase (Gox) is the best characterised. GlxA is a key cuproenzyme in the copper-dependent morphological development of S. lividans with a function that is linked to the processing of an extracytoplasmic glycan. The catalytic sites in GlxA and Gox contain two distinct one-electron acceptors comprising the copper ion and a 3'-(S-cysteinyl) tyrosine. The latter is formed post-translationally through a covalent bond between a cysteine and a copper-co-ordinating tyrosine ligand and houses a radical. In GlxA and Gox, a second co-ordination sphere tryptophan residue (Trp288 in GlxA) is present, but the orientation of the indole ring differs between the two enzymes, creating a marked difference in the π-π stacking interaction of the benzyl ring with the 3'-(S-cysteinyl) tyrosine. Differences in the spectroscopic and enzymatic activity have been reported between GlxA and Gox with the indole orientation suggested as a reason. Here, we report a series of in vivo and in vitro studies using the W288F and W288A variants of GlxA to assess the role of Trp288 on the morphology, maturation, spectroscopic and enzymatic properties. Our findings point towards a salient role for Trp288 in the kinetics of copper loading and maturation of GlxA, with its presence essential for stabilising the metalloradical site required for coupling catalytic activity and morphological development.


Assuntos
Proteínas de Bactérias/química , Cobre/química , Galactose Oxidase/química , Oxirredutases/química , Streptomyces lividans/química , Triptofano/química , Motivos de Aminoácidos , Substituição de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Domínio Catalítico , Cátions Bivalentes , Clonagem Molecular , Cobre/metabolismo , Cristalografia por Raios X , Cisteína/química , Cisteína/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Fusarium/química , Fusarium/enzimologia , Fusarium/crescimento & desenvolvimento , Galactose Oxidase/genética , Galactose Oxidase/metabolismo , Expressão Gênica , Cinética , Ligantes , Mutação , Oxirredutases/genética , Oxirredutases/metabolismo , Ligação Proteica , Domínios Proteicos , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Streptomyces lividans/enzimologia , Streptomyces lividans/crescimento & desenvolvimento , Homologia Estrutural de Proteína , Especificidade por Substrato , Triptofano/metabolismo , Tirosina/química , Tirosina/metabolismo
15.
J Biol Chem ; 291(16): 8663-72, 2016 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-26887943

RESUMO

NsrR is an iron-sulfur cluster protein that regulates the nitric oxide (NO) stress response of many bacteria. NsrR from Streptomyces coelicolor regulates its own expression and that of only two other genes, hmpA1 and hmpA2, which encode HmpA enzymes predicted to detoxify NO. NsrR binds promoter DNA with high affinity only when coordinating a [4Fe-4S] cluster. Here we show that reaction of [4Fe-4S] NsrR with NO affects DNA binding differently depending on the gene promoter. Binding to the hmpA2 promoter was abolished at ∼2 NO per cluster, although for the hmpA1 and nsrR promoters, ∼4 and ∼8 NO molecules, respectively, were required to abolish DNA binding. Spectroscopic and kinetic studies of the NO reaction revealed a rapid, multi-phase, non-concerted process involving up to 8-10 NO molecules per cluster, leading to the formation of several iron-nitrosyl species. A distinct intermediate was observed at ∼2 NO per cluster, along with two further intermediates at ∼4 and ∼6 NO. The NsrR nitrosylation reaction was not significantly affected by DNA binding. These results show that NsrR regulates different promoters in response to different concentrations of NO. Spectroscopic evidence indicates that this is achieved by different NO-FeS complexes.


Assuntos
Proteínas de Bactérias/metabolismo , DNA Bacteriano/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Óxido Nítrico/metabolismo , Regiões Promotoras Genéticas/fisiologia , Streptomyces coelicolor/metabolismo , Fatores de Transcrição/metabolismo , Proteínas de Bactérias/genética , DNA Bacteriano/genética , Proteínas Ferro-Enxofre/genética , Streptomyces coelicolor/genética , Fatores de Transcrição/genética
16.
J Biol Chem ; 291(24): 12838-12850, 2016 Jun 10.
Artigo em Inglês | MEDLINE | ID: mdl-27129229

RESUMO

Copper-dependent lytic polysaccharide monooxygenases (LPMOs) are enzymes that oxidatively deconstruct polysaccharides. The active site copper in LPMOs is coordinated by a histidine-brace. This utilizes the amino group and side chain of the N-terminal His residue with the side chain of a second His residue to create a T-shaped arrangement of nitrogen ligands. We report a structural, kinetic, and thermodynamic appraisal of copper binding to the histidine-brace in an auxiliary activity family 10 (AA10) LPMO from Streptomyces lividans (SliLPMO10E). Unexpectedly, we discovered the existence of two apo-SliLPMO10E species in solution that can each bind copper at a single site with distinct kinetic and thermodynamic (exothermic and endothermic) properties. The experimental EPR spectrum of copper-bound SliLPMO10E requires the simulation of two different line shapes, implying two different copper-bound species, indicative of three and two nitrogen ligands coordinating the copper. Amino group coordination was probed through the creation of an N-terminal extension variant (SliLPMO10E-Ext). The kinetics and thermodynamics of copper binding to SliLPMO10E-Ext are in accord with copper binding to one of the apo-forms in the wild-type protein, suggesting that amino group coordination is absent in the two-nitrogen coordinate form of SliLPMO10E. Copper binding to SliLPMO10B was also investigated, and again it revealed the presence of two apo-forms with kinetics and stoichiometry of copper binding identical to that of SliLPMO10E. Our findings highlight that heterogeneity exists in the active site copper coordination sphere of LPMOs that may have implications for the mechanism of loading copper in the cell.


Assuntos
Proteínas de Bactérias/química , Cobre/química , Histidina/química , Oxigenases de Função Mista/química , Compostos Organometálicos/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Domínio Catalítico , Cobre/metabolismo , Cristalografia por Raios X , Espectroscopia de Ressonância de Spin Eletrônica , Regulação Bacteriana da Expressão Gênica , Regulação Enzimológica da Expressão Gênica , Histidina/metabolismo , Cinética , Espectrometria de Massas , Oxigenases de Função Mista/genética , Oxigenases de Função Mista/metabolismo , Modelos Moleculares , Mutação , Compostos Organometálicos/metabolismo , Polissacarídeos/metabolismo , Ligação Proteica , Estrutura Terciária de Proteína , Espectrometria de Fluorescência , Streptomyces lividans/enzimologia , Streptomyces lividans/genética , Especificidade por Substrato , Termodinâmica
17.
Angew Chem Int Ed Engl ; 56(23): 6502-6506, 2017 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-28464409

RESUMO

The concerted redox action of a metal ion and an organic cofactor is a unique way to maximize the catalytic power of an enzyme. An example of such synergy is the fungal galactose 6-oxidase, which has inspired the creation of biomimetic copper oxidation catalysts. Galactose 6-oxidase and its bacterial homologue, GlxA, possess a metalloradical catalytic site that contains a free radical on a covalently linked Cys-Tyr and a copper atom. Such a catalytic site enables for the two-electron oxidation of alcohols to aldehydes. When the ability to form the Cys-Tyr in GlxA is disrupted, a radical can still be formed. Surprisingly, the radical species is not the Tyr residue but rather a copper second-coordination sphere Trp residue. This is demonstrated through the introduction of a new algorithm for Trp-radical EPR spectra simulation. Our findings suggest a new mechanism of free-radical transfer between aromatic residues and that the Cys-Tyr cross-link prevents radical migration away from the catalytic site.


Assuntos
Cobre/química , Cisteína/química , Galactose Oxidase/química , Galactose Oxidase/metabolismo , Triptofano/química , Tirosina/química , Algoritmos , Domínio Catalítico , Cristalografia por Raios X , Espectroscopia de Ressonância de Spin Eletrônica , Oxirredução
18.
J Biol Inorg Chem ; 21(1): 63-70, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26666777

RESUMO

A cationic class III peroxidase from Sorghum bicolor was purified to homogeneity. The enzyme contains a high-spin heme, as evidenced by UV-visible spectroscopy and EPR. Steady state oxidation of guaiacol was demonstrated and the enzyme was shown to have higher activity in the presence of calcium ions. A Fe(III)/Fe(II) reduction potential of -266 mV vs NHE was determined. Stopped-flow experiments with H2O2 showed formation of a typical peroxidase Compound I species, which converts to Compound II in the presence of calcium. A crystal structure of the enzyme is reported, the first for a sorghum peroxidase. The structure reveals an active site that is analogous to those for other class I heme peroxidase, and a substrate binding site (assigned as arising from binding of indole-3-acetic acid) at the γ-heme edge. Metal binding sites are observed in the structure on the distal (assigned as a Na(+) ion) and proximal (assigned as a Ca(2+)) sides of the heme, which is consistent with the Ca(2+)-dependence of the steady state and pre-steady state kinetics. It is probably the case that the structural integrity (and, thus, the catalytic activity) of the sorghum enzyme is dependent on metal ion incorporation at these positions.


Assuntos
Heme/química , Peroxidases/química , Sorghum/química , Cristalografia por Raios X , Espectroscopia de Ressonância de Spin Eletrônica , Cinética
19.
Biochem J ; 465(1): 127-37, 2015 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-25327890

RESUMO

Cytoglobin (Cygb) is a hexa-co-ordinate haem protein from the globin superfamily with a physiological function that is unclear. We have previously reported that the haem co-ordination is changed in the presence of lipids, potentially transforming the redox properties of the protein and hence the function of Cygb in vivo. Recent research suggests that the protein can exist in a number of states depending on the integrity and position of disulfide bonds. In the present study, we show that the monomeric protein with an internal disulfide bond between the two cysteine residues Cys38 and Cys83, interacts with lipids to induce a change in haem co-ordination. The dimeric protein with intermolecular disulfide bonds and monomeric protein without an intramolecular disulfide bond does not exhibit these changes in haem co-ordination. Furthermore, monomeric Cygb with an intramolecular disulfide bond has significantly different properties, oxidizing lipid membranes and binding ligands more rapidly as compared with the other forms of the protein. The redox state of these cysteine residues in vivo is therefore highly significant and may be a mechanism to modulate the biochemical properties of the haem under conditions of stress.


Assuntos
Dissulfetos/metabolismo , Globinas/metabolismo , Heme/metabolismo , Lipídeos/química , Ácido Ascórbico/metabolismo , Azidas/metabolismo , Monóxido de Carbono/metabolismo , Citoglobina , Eletroforese em Gel de Poliacrilamida , Humanos , Ferro/metabolismo , Ligantes , Proteínas Mutantes/metabolismo , Ácido Oleico/metabolismo , Oxirredução , Multimerização Proteica , Estabilidade Proteica , Proteínas Recombinantes/metabolismo
20.
Biochem J ; 469(3): 433-44, 2015 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-26205496

RESUMO

Streptomyces lividans displays a distinct dependence on copper to fully initiate morphological development. Evidence has accumulated to implicate the participation of an extracytoplasmic cuproenzyme in morphogenesis. In the present study, we show that GlxA fulfils all criteria to be that cuproenzyme. GlxA is membrane associated and has an active site consisting of a mononuclear copper and a cross-linked Y-C cofactor. The domain organization of the tertiary structure defines GlxA as a new structural member of the mono-copper oxidase family, with copper co-ordination geometry similar to, but spectroscopically distinct from fungal galactose oxidase (Gox). EPR spectroscopy reveals that the oxidation of cupric GlxA generates a protein radical residing on the Y-C cross-link. A variety of canonical Gox substrates (including D-galactose) were tested but none were readily turned over by GlxA. A glxA null-mutant leads to loss of glycan accumulation at hyphal tips and consequently a drastically changed morphology both on solid substrates and in liquid-grown environments, a scenario similarly observed in the absence of the neighbouring glycan synthase CslA (cellulase synthase-like protein). In addition the glxA mutant has lost the stimulation of development by copper, supporting a model whereby the enzymatic action of GlxA on the glycan is required for development and morphology. From a biotechnology perspective, the open mycelium morphology observed with the glxA mutant in submerged culture has implications for use as an enzyme production host.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Hifas/crescimento & desenvolvimento , Oxirredutases/química , Oxirredutases/metabolismo , Polissacarídeos/metabolismo , Streptomyces lividans/enzimologia , Proteínas de Bactérias/genética , Cobre/metabolismo , Hifas/enzimologia , Hifas/genética , Hifas/metabolismo , Modelos Moleculares , Morfogênese , Oxirredutases/genética , Streptomyces lividans/genética , Streptomyces lividans/crescimento & desenvolvimento , Streptomyces lividans/metabolismo
SELEÇÃO DE REFERÊNCIAS
Detalhe da pesquisa