Template-Free Synthesized Gold Nanobowls Composed with Graphene Oxide for Ultrasensitive SERS Platforms.

Engineering of plasmonic properties of gold nanostructures expands the field of their applications from photocatalysis and photothermal effects to ultrasensitive surface-enhanced Raman spectroscopy (SERS). The known methods of preparation of gold nanobowls involve the deposition of gold layer on polymers or silicon nanotemplates and the removal of the top layer of gold together with the template. Such gold nanobowls are characterized by very broad plasmonic bands due to the plasmon hybridization. The sharp edges on the top of nanobowls are potential sources of the strong electromagnetic field beneficial for SERS. We present a novel template-free synthesis of gold nanobowls (AuNBs). The AuNB layers are deposited on graphene oxide (GO) layers. We compare AuNBs with gold nanospheres (AuNSs) and gold nanourchins (AuNUs) having similar size. The gold nanoparticles are combined with pristine GO or graphene oxide conditioned in ammonia (GONH3) or graphene oxide conditioned in sodium hydroxide (GONaOH). The SERS properties of the hybrid supports were studied using rhodamine 6G (R6G) as the SERS probe. The 633 nm laser line was used, which falls out of the molecular resonance with R6G. The results indicate that AuNBs show largely higher enhancement factors when compared to AuNUs and AuNSs. Furthermore, the GO materials are able to modify the SERS enhancement by 1 order of magnitude. We explain the influence of the GO material by three factors: (1) enabling or disabling the charge transfer between gold and R6G, which is crucial for the chemical part of SERS enhancement; (2) causing the aggregation of gold nanoparticles and formation of hot spots; (3) dipole contribution to the electromagnetic enhancement through the abundance of polar groups on the surface.

Investigation of Peptides for Molecular Recognition of C-Reactive Protein-Theoretical and Experimental Studies.

We investigate the interactions between C-reactive protein (CRP) and new CRP-binding peptide materials using experimental (biological and physicochemical) methods with the support of theoretical simulations (computational modeling analysis). Three specific CRP-binding peptides (P2, P3, and P9) derived from an M13 bacteriophage have been identified using phage-display technology. The binding efficiency of the peptides exposed on phages toward the CRP protein was demonstrated via biological methods. Fibers of the selected phages/peptides interact differently due to different compositions of amino acid sequences on the exposed peptides, which was confirmed by transmission electron microscopy. Numerical and experimental studies consistently showed that the P3 peptide is the best CRP binder. A combination of theoretical and experimental methods demonstrates that identifying the best binder can be performed simply, cheaply, and fast. Such an approach has not been reported previously for peptide screening and demonstrates a new trend in science where calculations can replace or support laborious experimental techniques. Finally, the best CRP binder─the P3 peptide─was used for CRP recognition on silicate-modified indium tin oxide-coated glass electrodes. The obtained electrodes exhibit a wide range of operation (1.0-100 µg mL-1) with a detection limit (LOD = 3σ/S) of 0.34 µg mL-1. Moreover, the dissociation constant Kd of 4.2 ± 0.144 µg mL-1 (35 ± 1.2 nM) was evaluated from the change in the current. The selectivity of the obtained electrode was demonstrated in the presence of three interfering proteins. These results prove that the presented P3 peptide is a potential candidate as a receptor for CRP, which can replace specific antibodies.

Silver-Graphene Oxide Nanohybrids for Highly Sensitive, Stable SERS Platforms.

Graphene oxide-silver nanoparticle nanohybrids were synthesized by simple reduction of the silver nitrate and graphene oxide (GO) mixture in water using the mild reducing agent ascorbic acid. The concentration of ascorbic acid was varied to verify the possible influence of the GO surface composition on the efficiency of the hybrid material as substrates for surface enhanced Raman spectroscopy (SERS). Furthermore, the composites were conditioned in ammonia solution or in potassium hydroxide diluted solution. For comparison, the graphene oxide-silver nanoparticle composite has been synthesized using the ammonia-treated GO. All materials were characterized using spectroscopic and microscopic methods including UV-Vis, infrared, and Raman spectroscopy and scanning electron microscopy. The SERS efficiency of the nanohybrids was tested using 4-aminothiophenol (PATP). The optimal synthesis conditions were found. Ammonia and potassium peroxide drop-casted on the composite changed the SERS properties. The sample treated with KOH showed the best SERS enhancement. The variation of the SERS enhancement was correlated with the shape of the UV-Vis characteristics and the surface structure of the composites.

Noble Metal Nanoparticles in Pectin Matrix. Preparation, Film Formation, Property Analysis, and Application in Electrocatalysis.

Stable polymeric materials with embedded nano-objects, retaining their specific properties, are indispensable for the development of nanotechnology. Here, a method to obtain Pt, Pd, Au, and Ag nanoparticles (ca. 10 nm, independent of the metal) by the reduction of their ions in pectin, in the absence of additional reducing agents, is described. Specific interactions between the pectin functional groups and nanoparticles were detected, and they depend on the metal. Bundles and protruding nanoparticles are present on the surface of nanoparticles/pectin films. These films, deposited on the electrode surface, exhibit electrochemical response, characteristic for a given metal. Their electrocatalytic activity toward the oxidation of a few exemplary organic molecules was demonstrated. In particular, a synergetic effect of simultaneously prepared Au and Pt nanoparticles in pectin films on glucose electro-oxidation was found.

Microplastics on sandy beaches of the southern Baltic Sea.

Microplastic occurrence and composition were investigated along the Polish coast (southern Baltic Sea) on 12 beaches differing in terms of intensity of their touristic exploitation, urbanisation and sediment characteristics. Their mean concentrations varied between 76 and 295 items per kg dry sediment. Fibres and plastic fragments were the dominant microplastic types. Overall, no relationship was found between their concentrations and sediment characteristics. Fine sediments were not identified as microplastic pollution traps. The highest microplastic concentrations were recorded at some urban beaches indicating that population density and the level of coastal infrastructure development are important factors affecting microplastic pollution level on beaches. On the other hand, microplastic concentrations in national parks did not differ substantially from the other beaches. Our results suggest that sediment accumulation processes may exceed microplastic accumulation, and overcome the effect of tourism and/or urbanisation, highlighting the role of the beach hydrodynamic status in structuring beach microplastic pollution.

Enantioselective recognition of sutezolid by cyclodextrin modified non-aqueous capillary electrophoresis and explanation of complex formation by means of infrared spectroscopy, NMR and molecular modelling.

A method for the enantioseparation of sutezolid, the next analogue after linezolid and tedizolid, belonging to the truly new class of antibacterial agents, the oxazolidinones, was developed based on non-aqueous capillary electrophoresis (NACE), using a single isomer of cyclodextrins as a chiral pseudophase. During the experiment, the enantioseparation of sutezolid together with its predecessor, linezolid, both weak base antibacterial agents, was evaluated using anionic single-isomers of cyclodextrins from hydrophilic, up to hydrophobic: heptakis-(2,3-dihydroxy-6-sulfo)-ß-cyclodextrin, heptakis-(2,3-diacetyl-6-sulfo)-ß-cyclodextrin (HDAS-ß-CD), as well as heptakis-(2,3-dimethyl-6-sulfo)-ß-cyclodextrin (HDMS-ß-CD), respectively. Based on the observed results, the cyclodextrins, HDAS-ß-CD and HDMS-ß-CD which carry the acetyl and methyl groups at the C2 and C3 positions, respectively, provided the baseline separation of sutezolid enantiomers. However, HDMS-ß-CD led to a reversal of enantiomer migration order (EMO) in comparison to HDAS-ß-CD. Instead, enantiomers of linezolid were separated only by HDMS-ß-CD. During the experiments, different organic solvents and their mixtures in various ratios were tested. The selectivity and separation efficiency were critically affected by the nature of the buffer system, the type of organic solvent, and the concentrations of trifluoroacetic acid (TFA) in the NACE buffer system. Focusing on the desired EMO in which the eutomers (S)-sutezolid and (S)-linezolid migrated last, the highest enantioresolution using the NACE method was achieved at normal polarity mode with 45 mM HDMS-ß-CD dissolved in MeOH/ACN (85:15, v/v) containing 200 mM TFA/20 mM ammonium formate. Moreover, infrared spectroscopy, NMR and molecular modelling were investigated to provide information about complex formation.

Graphene and Graphene Oxide Applications for SERS Sensing and Imaging.

Surface Enhanced Raman Spectroscopy (SERS) has a long history as an ultrasensitive platform for the detection of biological species from small aromatic molecules to complex biological systems as circulating tumor cells. Thanks to unique properties of graphene, the range of SERS applications has largely expanded. Graphene is efficient fluorescence quencher improving quality of Raman spectra. It contributes also to the SERS enhancement factor through the chemical mechanism. In turn, the chemical flexibility of Reduced Graphene Oxide (RGO) enables tunable adsorption of molecules or cells on SERS active surfaces. Graphene oxide composites with SERS active nanoparticles have been also applied for Raman imaging of cells. This review presents a survey of SERS assays employing graphene or RGO emphasizing the improvement of SERS enhancement brought by graphene or RGO. The structure and physical properties of graphene and RGO will be discussed too.

Influence of amine and thiol modifications at the 3' ends of single stranded DNA molecules on their adsorption on gold surface and the efficiency of their hybridization.

Adsorption of molecules of DNA (deoxyribonucleic acid) or modified DNA on gold surfaces is often the first step in construction of many various biosensors, including biosensors for detection of DNA with a particular sequence. In this work we study the influence of amine and thiol modifications at the 3' ends of single stranded DNA (ssDNA) molecules on their adsorption on the surface of gold substrates and on the efficiency of hybridization of immobilized DNA with the complementary single stranded DNA. The characterization of formed layers has been carried out using infrared spectroscopy and atomic force microscopy. As model single stranded DNA we used DNA containing 20 adenine bases, whereas the complementary DNA contained 20 thymine bases. We found that the bands in polarization modulation-infrared reflection-adsorption spectroscopy (PM-IRRAS) spectra of layers formed from thiol-modified DNA are significantly narrower and sharper, indicating their higher regularity in the orientation of DNA on gold surface when using thiol linker. Also, hybridization of the layer of thiol-modified DNA containing 20 adenine bases with the respective DNA containing thymine bases leads to formation of much more organized structures than in the case of unmodified DNA or DNA with the amine linker. We conclude that the thiol-modified ssDNA is more promising for the preparation of biosensors, in comparison with the amine-modified or unmodified ssDNA. We have also found that the above-mentioned modifications at the 3' end of ssDNA significantly influence the IR spectrum (and hence the structure) of polycrystalline films formed from such compounds, even though adsorbed fragments contain less than 5% of the DNA chain. This effect should be taken into account when comparing IR spectra of various polycrystalline films formed from modified and unmodified DNA.

Modified Filamentous Bacteriophage as a Scaffold for Carbon Nanofiber.

With the advent of nanotechnology, carbon nanomaterials such as carbon nanofibers (CNF) have aroused substantial interest in various research fields, including energy storage and sensing. Further improvement of their properties might be achieved via the application of viral particles such as bacteriophages. In this report, we present a filamentous M13 bacteriophage with a point mutation in gene VII (pVII-mutant-M13) that selectively binds to the carbon nanofibers to form 3D structures. The phage-display technique was utilized for the selection of the pVII-mutant-M13 phage from the phage display peptide library. The properties of this phage make it a prospective candidate for a scaffold material for CNFs. The results for binding of CNF by mutant phage were compared with those for maternal bacteriophage (pVII-M13). The efficiency of binding between pVII-mutant-M13 and CNF is about 2 orders of magnitude higher compared to that of the pVII-M13. Binding affinity between pVII-mutant-M13 and CNF was also characterized using atomic force microscopy, scanning electron microscopy, and transmission electron microscopy, which confirmed the specificity of the interaction of the phage pVII-mutant-M13 and the CNF; the binding occurs via the phage's ending, where the mutated pVII protein is located. No similar behavior has been observed for other carbon nanomaterials such as graphite, reduced graphene oxide, single-walled carbon nanotubes, and multiwalled carbon nanotubes. Infrared spectra confirmed differences in the interaction with CNF between the pVII-mutant-M13 and the pVII-M13. Basing on conducted research, we hypothesize that the interactions are noncovalent in nature, with π-π interactions playing the dominant role. Herein, the new bioconjugate material is introduced.

Synthesis and characterization of porous carbon-MoS2 nanohybrid materials: electrocatalytic performance towards selected biomolecules.

Porous carbon nanohybrids are promising materials as high-performance electrodes for both sensing and energy conversion applications. This is mainly due to their high specific surface area and specific physicochemical properties. Here, new porous nanohybrid materials are developed based on exfoliated MoS2 nanopetals and either negatively charged phenylsulfonated carbon nanoparticles or positively charged sulfonamide functionalized carbon nanoparticles. MoS2 nanopetals not only act as a scaffold for carbon nanoparticles to form 3D porous hierarchical architectures but also result in well-separated electrochemical signals for different compounds. The characteristics of the new carbon nanohybrid materials are studied by dynamic light scattering, zeta potential analysis, high resolution X-ray photoelectron spectroscopy, transmission electron microscopy, scanning electron microscopy, infrared spectroscopy and electrochemistry. The new hybrid materials show superior charge transport capability and electrocatalytic activity toward selected biologically relevant compounds compared to earlier reports on porous carbon electrodes.

Dependence of interfacial film organization on lipid molecular structure.

Combination of surface analytical techniques was employed to investigate the interfacial behavior of the two designed lipids-N-stearoylglycine (1) and its bulky neutral headgroup-containing derivative N-stearoylvaline ethyl ester (2)-at the air-solution interface and as transferred layers on different substrates. Formation of monolayers at the air-water interface was monitored on pure water and on aqueous solutions of different pH. Crystallization effects were visualized at pure water by recording the hystereses in the Langmuir-Blodgett (LB) isotherms and by transferring the layers onto mica, gold (111), and ITO (indium-tin oxide on glass) electrodes. Subphase pH affects the morphology and patch formation in monolayers of 1, as evidenced by BAM measurements. At pH 8.2, formation of well-ordered crystallites is observed, which upon compression elongate according to predominantly 1-D growth mechanism to form a dense layer of crystallites. This effect is not observed in monolayers of 2, whose headgroup is not protonated. The orientation of layers of 1 transferred to the solid supports is also pH dependent, and their stability can be related to formation of a hydrogen-bonded networks. AFM images of 1 exhibited platelets of multilayer phase. The IR spectra of the ITO substrates covered by 1 indicated formation of hydrogen bonds between the amide groups. The nature of the adsorption layer and its organization as a function of potential were studied in-depth by EC STM using Au(111) as the substrate. A model showing the arrangement of hydrogen bonds between adsorbed molecules is presented and related to the observed organization of the layer.

The electrochemical properties of nanocomposite films obtained by chemical in situ polymerization of aniline and carbon nanostructures.

Interactions between the π bonds in the aromatic rings of polyaniline (PANI) with carbon nanostructures (CNs) facilitate charge transfer between the two components. Different types of phenyleneamine-terminated CNs, including carbon nano-onions (CNOs) and single-walled and multi-walled carbon nanotubes (SWNTs and MWNTs, respectively), were prepared as templates, and the CN/PANI nanocomposites were easily prepared with uniform core-shell structures. By varying the ratio of the aniline monomers relative to the CNs in the in situ chemical polymerization process, the thickness of the PANI layers was effectively controlled. The morphological and electrical properties of the nanocomposite were determined and compared. The thickness and structure of the PANI films on the CNs were characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM), and infrared spectroscopy. TEM and SEM revealed that the composite films consisted of nanoporous networks of CNs coated with polymeric aniline. The electrochemical properties of the composites were investigated by cyclic voltammetry and electrochemical impedance spectroscopy. These studies showed that the CN/PANI composite films had lower resistance than pure polymeric films of PANI, and the presence of CNs much improved the mechanical stability. The specific electrochemical capacitance of the CNO/PANI composite films was significantly larger than for pure PANI.

Intermolecular interactions in electron transfer through stretched helical peptides.

The helical peptide Cys-Ala-Lys-(Glu-Ala-Ala-Ala-Lys)(2)-Ala-NH-(CH(2))(2)-SH has been organized forming a self-assembled monolayer on gold (0.602 peptides per nm(2)), its conductance behavior under stretching conditions being studied using scanning tunnelling microscopy and current sensing atomic force microscopy. The helical conformation of the peptide has been found to play a fundamental role in the conductance. Moreover, variation of the current upon molecular stretching indicates that peptides can be significantly elongated before the conductance drops to zero, the critical elongation being 1.22 ± 0.47 nm. Molecular dynamics simulations of a single peptide in the free state and of a variable number of peptides tethered to a gold surface (i.e. densities ranging from 0.026 to 1.295 peptides per nm(2)) have indicated that the helical conformation is intrinsically favored in solvated environments while in desolvated environments it is retained because of the fundamental role played by peptide-peptide intermolecular interactions. The structure obtained for the system with 24 tethered peptides, with a density of 0.634 peptides per nm(2) closest to the experimental one, is in excellent agreement with experimental observations. On the other hand, simulations in which a single molecule is submitted to different compression and stretching processes while the rest remain in the equilibrium have been used to mimic the variation of the tip-substrate distance in experimental measures. Results allowed us to identify the existence, and in some cases coexistence, of intermolecular and intramolecular ionic ladders, suggesting that peptide-mediated electron transfer occurs through the hopping mechanism. Finally, quantum mechanical calculations have been used to investigate the variation of the electronic structure upon compression and stretching deformations.

Preparation and characterization of composites that contain small carbon nano-onions and conducting polyaniline.

Small multilayer fullerenes, also known as carbon nano-onions (CNOs; 5-6 nm in diameter, 6-8 shells), show higher reactivity than other larger carbon nanostructures. Here we report the first example of an in situ polymerization of aniline on phenyleneamine-terminated CNO surfaces. The green, protonated, conducting emeraldine polyaniline (PANI) was directly synthesized on the surface of the CNO. The functionalized and soluble CNO/PANI composites were characterized by TEM, SEM, DSC, Raman, and infrared spectroscopy. The electrochemical properties of the conducting CNO/PANI films were also investigated. In comparison with pristine CNOs, functionalized carbon nanostructures show dramatically improved solubility in protic solvents, thus enabling their easy processing for coatings, nanocomposites, and biomedical applications.

Poly-o-aminophenol as a laccase mediator and influence of the enzyme on the polymer electrodeposition.

Applicability of poly-o-aminophenol (POAP) as a redox mediator for fungal laccase is investigated. Laccase has been entrapped by means of electrochemical polymerization. The obtained layers have been characterized by cyclic voltammetry, as well as by spectroscopic methods. The enzyme activity has been verified by the standard test using syringaldazine. Laccase immobilized in the POAP matrix catalyses oxygen reduction without any additional mediators. POAP is able to mediate the electron transfer between the enzyme active site and the electrode surface similarly to poly-o-phenylenediamine which has been studied previously, but its redox potential is shifted significantly towards positive values. The role of laccase in electrodeposition of POAP has been studied. It has been found that the presence of the enzyme influences the structure of electrodeposited films. Furthermore, laccase facilitates the electrodeposition. The monomer-o-aminophenol (OAP) belongs to typical laccase substrates. The polymer can be precipitated from the solution containing the monomer and laccase. The morphology of POAP formed by laccase differs from typical polymer samples synthesized chemically or electrochemically. It contains round microstructures composed of nano-needles. Laccase is therefore a promising polymerization initiator for synthesis of nanostructured conducting polymers.

Interactions of dithiolated tetraazamacrocyclic copper(II) and nickel(II) complexes self-assembled on gold electrodes with pi-electron deficient molecules in solution.

Self-assembled monolayers of dithiolated neutral monotetraazamacrocyclic complexes of copper(II) and nickel(II) can provide molecularly defined platforms for the formation of a pseudorotaxane-like nanostructures on the gold electrode surface. We propose these complexes as pi-donor building blocks for the construction of new molecular devices. We show that these perpendicularly oriented macrocyclic complexes anchored to the electrode surface act as pi-electron rich species interacting with pi-electron deficient compounds dissolved in solution, such as fluorine derivatives of tetracyanoquinodimethane (F(4)TCNQ) or a charged bismacrocyclic tetraaza complex of copper(II). The interactions of the surface immobilized macrocyclic complexes with F(4)TCNQ and with ring-shaped acceptor molecules are monitored and characterized by linear scan voltammetry. The interactions with the bismacrocyclic compound lead to a new pseudorotaxane array supported on the electrode surface and switched on and off by the application of appropriate potentials.

Covalent binding of sensor phases--a recipe for stable potentials of solid-state ion-selective sensors.

In this work, a new concept of the solid-state sensors free from EMF instabilities is proposed. In order to prevent the formation of an aqueous layer underneath the ion-selective membrane, instead of improving the hydrophobicity of the monolayer, the moieties terminated with acrylate groups were incorporated within the redox-active monolayer structure. It allowed to "sew" all phases of the sensor (i.e., the transducer, the intermediate layer and the ion-selective membrane) and to obtain a stable and durable ion-selective sensor. It is shown that newly designed monolayer containing both the ferrocene- and the acrylate-terminated molecules does not affect the working parameters of the electrode, such as selectivity or the slope of the calibration curve, although the EMF drift of the sensor is significantly reduced to 0.2 mV per day.

pH-tunable equilibria in azocrown ethers with histidine moieties.

The crown ethers with electro- and photoactive azo moieties containing substituents with mobile protons such as in the -COOH groups of histidine, show unique effect of pH switched on/off presence of the azo form. The differences observed for the electrochemical behavior of azocrown ethers with N-acetylhistidine and imidazole moieties reveal the interference of a chemical reduction pathway in strongly acidified solutions. This chemical reduction process leads to the formation of a hydrazine derivative which can be detected by its further electroreduction on the electrode surface. The involvement of chemical reduction is seen clearly in the presence of mobile protons of the -COOH group and mercury as the electrode substrate. The behaviour of the N-acetylhistidine azomacrocyle is similar to that of compounds known to exist in quinone-hydrazone tautomeric equilibria.

Polyoxometallates as inorganic templates for electrocatalytic network films of ultra-thin conducting polymers and platinum nanoparticles.

We develop a concept of fabrication of the multilayer network films on electrodes by exploring the ability of a Keggin-type polyoxometallate, phosphododecamolybdate (PMo(12)O(40)(3-)), to form stable anionic monolayers (templates) on carbon and metals including platinum. By repeated alternate treatments in the solution of PMo(12)O(40)(3-) (or in the colloidal suspension of polyoxometallate-protected Pt-nanoparticles) and in the solution of monomer (e.g. anilinium) cations, the amount of the material can be increased systematically (layer-by-layer) to form stable three-dimensional assemblies on electrode (e.g. glassy carbon) surfaces. In the resulting hybrid (organic-inorganic) films, the layers of negatively charged polyoxometallate, or polyoxometallate-protected (stabilized) Pt-nanoparticles, are linked or electrostatically attracted by ultra-thin layers of such positively charged conducting polymers as polyaniline (PANI), polypyrrole (PPy) or poly(3,4-ethylenedioxythiophene), PEDOT. Consequently, the attractive physicochemical properties of polymers and reactivity of polyoxometallate or noble metal particles are combined. The films are functionalized and show electrocatalytic properties towards reduction of nitrite, bromate, hydrogen peroxide or oxygen. They are of importance to the chemical and biochemical sensing as well as to the biochemical and medical applications.

Asymmetry of electron transmission through monolayers of helical polyalanine adsorbed on gold surfaces.

Polyalanine derivatives containing cysteamine linker R-(Ala)14NH-(CH2)2-SH, where R is ferrocenecarbonyl or hydrogen, were synthesized and then used to form self-assembled monolayers on gold. The tilt angles and the packing density of the molecules within monolayer assemblies were determined by FTIR spectroscopy and scanning tunneling microscopy, respectively. Electrochemical properties of monolayer-modified electrodes were studied using cyclic voltammetry and impedance spectroscopy. Measurements of electron-transfer rates using electrochemical techniques and scanning tunneling spectroscopy revealed asymmetry dependent on the applied voltage. It is suggested that the observed electron-transfer behavior is connected with the electric field generated by the molecular dipole of the polyalanine helix.