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1.

Epigenetics and genome stability.

Feng, Justina X; Riddle, Nicole C.

Mamm Genome ; 31(5-6): 181-195, 2020 06.

Artículo en Inglés | MEDLINE | ID: mdl-32296924

2.

Variation in the response to exercise stimulation in Drosophila: marathon runner versus sprinter genotypes.

Riddle, Nicole C.

J Exp Biol ; 223(Pt 18)2020 09 21.

Artículo en Inglés | MEDLINE | ID: mdl-32737212

3.

Comparative analysis of metazoan chromatin organization.

Ho, Joshua W K; Jung, Youngsook L; Liu, Tao; Alver, Burak H; Lee, Soohyun; Ikegami, Kohta; Sohn, Kyung-Ah; Minoda, Aki; Tolstorukov, Michael Y; Appert, Alex; Parker, Stephen C J; Gu, Tingting; Kundaje, Anshul; Riddle, Nicole C; Bishop, Eric; Egelhofer, Thea A; Hu, Sheng'en Shawn; Alekseyenko, Artyom A; Rechtsteiner, Andreas; Asker, Dalal; Belsky, Jason A; Bowman, Sarah K; Chen, Q Brent; Chen, Ron A-J; Day, Daniel S; Dong, Yan; Dose, Andrea C; Duan, Xikun; Epstein, Charles B; Ercan, Sevinc; Feingold, Elise A; Ferrari, Francesco; Garrigues, Jacob M; Gehlenborg, Nils; Good, Peter J; Haseley, Psalm; He, Daniel; Herrmann, Moritz; Hoffman, Michael M; Jeffers, Tess E; Kharchenko, Peter V; Kolasinska-Zwierz, Paulina; Kotwaliwale, Chitra V; Kumar, Nischay; Langley, Sasha A; Larschan, Erica N; Latorre, Isabel; Libbrecht, Maxwell W; Lin, Xueqiu; Park, Richard.

Nature ; 512(7515): 449-52, 2014 Aug 28.

Artículo en Inglés | MEDLINE | ID: mdl-25164756

4.

Rho Kinase Inhibition as a Therapeutic for Progressive Supranuclear Palsy and Corticobasal Degeneration.

Gentry, Erik G; Henderson, Benjamin W; Arrant, Andrew E; Gearing, Marla; Feng, Yangbo; Riddle, Nicole C; Herskowitz, Jeremy H.

J Neurosci ; 36(4): 1316-23, 2016 Jan 27.

Artículo en Inglés | MEDLINE | ID: mdl-26818518

5.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko, Peter V; Alekseyenko, Artyom A; Schwartz, Yuri B; Minoda, Aki; Riddle, Nicole C; Ernst, Jason; Sabo, Peter J; Larschan, Erica; Gorchakov, Andrey A; Gu, Tingting; Linder-Basso, Daniela; Plachetka, Annette; Shanower, Gregory; Tolstorukov, Michael Y; Luquette, Lovelace J; Xi, Ruibin; Jung, Youngsook L; Park, Richard W; Bishop, Eric P; Canfield, Theresa K; Sandstrom, Richard; Thurman, Robert E; MacAlpine, David M; Stamatoyannopoulos, John A; Kellis, Manolis; Elgin, Sarah C R; Kuroda, Mitzi I; Pirrotta, Vincenzo; Karpen, Gary H; Park, Peter J.

Nature ; 471(7339): 480-5, 2011 Mar 24.

Artículo en Inglés | MEDLINE | ID: mdl-21179089

6.

Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz, Yuri B; Linder-Basso, Daniela; Kharchenko, Peter V; Tolstorukov, Michael Y; Kim, Maria; Li, Hua-Bing; Gorchakov, Andrey A; Minoda, Aki; Shanower, Gregory; Alekseyenko, Artyom A; Riddle, Nicole C; Jung, Youngsook L; Gu, Tingting; Plachetka, Annette; Elgin, Sarah C R; Kuroda, Mitzi I; Park, Peter J; Savitsky, Mikhail; Karpen, Gary H; Pirrotta, Vincenzo.

Genome Res ; 22(11): 2188-98, 2012 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-22767387

7.

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Alekseyenko, Artyom A; Ho, Joshua W K; Peng, Shouyong; Gelbart, Marnie; Tolstorukov, Michael Y; Plachetka, Annette; Kharchenko, Peter V; Jung, Youngsook L; Gorchakov, Andrey A; Larschan, Erica; Gu, Tingting; Minoda, Aki; Riddle, Nicole C; Schwartz, Yuri B; Elgin, Sarah C R; Karpen, Gary H; Pirrotta, Vincenzo; Kuroda, Mitzi I; Park, Peter J.

PLoS Genet ; 8(4): e1002646, 2012.

Artículo en Inglés | MEDLINE | ID: mdl-22570616

8.

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

Riddle, Nicole C; Jung, Youngsook L; Gu, Tingting; Alekseyenko, Artyom A; Asker, Dalal; Gui, Hongxing; Kharchenko, Peter V; Minoda, Aki; Plachetka, Annette; Schwartz, Yuri B; Tolstorukov, Michael Y; Kuroda, Mitzi I; Pirrotta, Vincenzo; Karpen, Gary H; Park, Peter J; Elgin, Sarah C R.

PLoS Genet ; 8(9): e1002954, 2012 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-23028361

9.

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.

Riddle, Nicole C; Minoda, Aki; Kharchenko, Peter V; Alekseyenko, Artyom A; Schwartz, Yuri B; Tolstorukov, Michael Y; Gorchakov, Andrey A; Jaffe, Jacob D; Kennedy, Cameron; Linder-Basso, Daniela; Peach, Sally E; Shanower, Gregory; Zheng, Haiyan; Kuroda, Mitzi I; Pirrotta, Vincenzo; Park, Peter J; Elgin, Sarah C R; Karpen, Gary H.

Genome Res ; 21(2): 147-63, 2011 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-21177972

10.

Comparative analysis of animal lifespan.

Riddle, Nicole C; Biga, Peggy R; Bronikowski, Anne M; Walters, James R; Wilkinson, Gerald S.

Geroscience ; 46(1): 171-181, 2024 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-37889438

11.

Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation.

Adler, Frederick R; Anderson, Alexander R A; Bhushan, Abhinav; Bogdan, Paul; Bravo-Cordero, Jose Javier; Brock, Amy; Chen, Yun; Cukierman, Edna; DelGiorno, Kathleen E; Denis, Gerald V; Ferrall-Fairbanks, Meghan C; Gartner, Zev Jordan; Germain, Ronald N; Gordon, Deborah M; Hunter, Ginger; Jolly, Mohit Kumar; Karacosta, Loukia Georgiou; Mythreye, Karthikeyan; Katira, Parag; Kulkarni, Rajan P; Kutys, Matthew L; Lander, Arthur D; Laughney, Ashley M; Levine, Herbert; Lou, Emil; Lowenstein, Pedro R; Masters, Kristyn S; Pe'er, Dana; Peyton, Shelly R; Platt, Manu O; Purvis, Jeremy E; Quon, Gerald; Richer, Jennifer K; Riddle, Nicole C; Rodriguez, Analiz; Snyder, Joshua C; Lee Szeto, Gregory; Tomlin, Claire J; Yanai, Itai; Zervantonakis, Ioannis K; Dueck, Hannah.

Cell Syst ; 14(4): 252-257, 2023 04 19.

Artículo en Inglés | MEDLINE | ID: mdl-37080161

12.

Functions of HP1 proteins in transcriptional regulation.

Schoelz, John M; Riddle, Nicole C.

Epigenetics Chromatin ; 15(1): 14, 2022 05 07.

Artículo en Inglés | MEDLINE | ID: mdl-35526078

13.

The Epigenome and Beyond: How Does Non-genetic Inheritance Change Our View of Evolution?

Brodie, Edmund D; Gregory, Brian; Lisch, Damon; Riddle, Nicole C.

Integr Comp Biol ; 61(6): 2199-2207, 2022 02 05.

Artículo en Inglés | MEDLINE | ID: mdl-34028538

14.

Sex-specific aging in animals: Perspective and future directions.

Bronikowski, Anne M; Meisel, Richard P; Biga, Peggy R; Walters, James R; Mank, Judith E; Larschan, Erica; Wilkinson, Gerald S; Valenzuela, Nicole; Conard, Ashley Mae; de Magalhães, João Pedro; Duan, Jingyue Ellie; Elias, Amy E; Gamble, Tony; Graze, Rita M; Gribble, Kristin E; Kreiling, Jill A; Riddle, Nicole C.

Aging Cell ; 21(2): e13542, 2022 02.

Artículo en Inglés | MEDLINE | ID: mdl-35072344

15.

GWAS reveal a role for the central nervous system in regulating weight and weight change in response to exercise.

Watanabe, Louis P; Riddle, Nicole C.

Sci Rep ; 11(1): 5144, 2021 03 04.

Artículo en Inglés | MEDLINE | ID: mdl-33664357

16.

Exercise-induced changes in climbing performance.

Watanabe, Louis P; Riddle, Nicole C.

R Soc Open Sci ; 8(11): 211275, 2021 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-34804578

17.

The Drosophila HP1 family is associated with active gene expression across chromatin contexts.

Schoelz, John M; Feng, Justina X; Riddle, Nicole C.

Genetics ; 219(1)2021 08 26.

Artículo en Inglés | MEDLINE | ID: mdl-34849911

18.

Multiple SET methyltransferases are required to maintain normal heterochromatin domains in the genome of Drosophila melanogaster.

Brower-Toland, Brent; Riddle, Nicole C; Jiang, Hongmei; Huisinga, Kathryn L; Elgin, Sarah C R.

Genetics ; 181(4): 1303-19, 2009 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-19189944

19.

Gene expression analysis at the intersection of ploidy and hybridity in maize.

Riddle, Nicole C; Jiang, Hongmei; An, Lingling; Doerge, R W; Birchler, James A.

Theor Appl Genet ; 120(2): 341-53, 2010 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-19657617

20.

Genetic Networks Underlying Natural Variation in Basal and Induced Activity Levels in Drosophila melanogaster.

Watanabe, Louis P; Gordon, Cameron; Momeni, Mina Y; Riddle, Nicole C.

G3 (Bethesda) ; 10(4): 1247-1260, 2020 04 09.

Artículo en Inglés | MEDLINE | ID: mdl-32014853

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