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1.
Plant Dis ; 2022 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-35698250

RESUMO

Onion (Allium cepa, L) is a very important vegetable crop in India. India is the second largest producer of onion in the world and the crop is grown on more than 1.22 million hectares. Fusarium Basal Rot (FBR) is an economically important diseasef onion that causes considerable losses in onion production up to 50% in field and 30-40% during post-harvest storage of bulbs (Gupta and Gupta 2013; Rajamohan et al. 2019). Onion plants showing chlorosis, twisting, wilting, necrosis, bulb discoloration, rot in the basal parts of bulb and roots typical to FBR were observed, in a field trial of 36 onion cultivars during October 2020 in Bangalore, Karnataka. FBR incidence varied from 30-100% in this field (Fig 1 a-d). Symptomatic bulbs were washed with water, basal plate and fleshy leaves cut into 0.5 to 1 cm-size, surface disinfected with 1.5% sodium hypochlorite (NaOCl) for 3 min, and rinsed with sterile distilled water. Twenty pieces were placed on potato dextrose agar (PDA) in Petri plates and incubated at 25°C for 7 days. Colonies from single-spore isolates on PDA showed abundant white aerial mycelium. Colonies showed light pink or purple coloration on the reverse side of the culture plate with brown center (Fig 1e-f). Macroconidia were 19.13 to 28.35 (mean= 24.2) × 4.29 to 6.06 (mean= 5.05) µm, hyaline, falcate, with slightly curved apexes, and three to five septa. Microconidia were cylindrical to ellipsoid, aseptate, hyaline 8.20 to 12 (mean=10.0) × 3.55 to 4.79 (mean= 4.29) µm (Fig 1g). Chlamydospores were round, intercalary, hyaline, single or in chains (Fig 1h). Two isolates (IBFF-09 & IBFF-10) were analyzed for internal transcribed spacer-ITS (White et al. 1990) and translation elongation factor 1-α (tef1) gene (O'Donnell et al. 1998) by polymerase chain reaction (PCR) and sequenced. ITS and partial tef1 gene sequences of isolates IBFF-09 and IBFF-10 were submitted to the NCBI database (GenBank accession # ON394614&ON026859; # ON409480, ON093166 respectively). Phylogenetic analysis of tef1 gene placed the isolates with F. falciforme (Fig 1i). A pathogenicity test was performed by dipping roots of 28 days old healthy onion seedlings of a susceptible genotype 16/7Y GR3 into a conidial suspension (1 × 104 conidia/ml) of isolate IBFF-10 for 15 min and then transplanting the plants into pots containing sterilized potting mix. Inoculated plants developed typical symptoms of FBR and were all dead by 20 days post inoculation (Fig 1j) while the non-inoculated controls remained healthy. Pathogen was re-isolated from infected plants and showed the same morphology, ITS and tef1 sequence similarity as the original isolate, thus fulfilling Koch's postulates. Basal rot of onion by F. falciforme is reported from Mexico (Tirado-Ramírez et al. 2021). Till date, only F .oxysporum, F. proliferatum and F. solani have been implicated in onion FBR in India (Lee et al. 2021; Rathore and Patil, 2019). F. falciforme however, i prevalent in India and is reported to infect other crops (Gangaraj et al. 2022; Gupta et al. 2019; Homa et al. 2018). There is a high probability that this pathogen is contributing significantly to basal rot disease but it has not been reported yet. To our knowledge, this is the first report of F. falciforme infecting onions in India. In order to develop FBR resistant onion cultivars it is critical to identify and study the response of onion genotypes to different Fusarium spp causing the disease.

2.
Sensors (Basel) ; 22(15)2022 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-35897995

RESUMO

Parkinson's disease (PD) is a neurological disorder with complicated and disabling motor and non-motor symptoms. The complexity of PD pathology is amplified due to its dependency on patient diaries and the neurologist's subjective assessment of clinical scales. A significant amount of recent research has explored new cost-effective and subjective assessment methods pertaining to PD symptoms to address this challenge. This article analyzes the application areas and use of mobile and wearable technology in PD research using the PRISMA methodology. Based on the published papers, we identify four significant fields of research: diagnosis, prognosis and monitoring, predicting response to treatment, and rehabilitation. Between January 2008 and December 2021, 31,718 articles were published in four databases: PubMed Central, Science Direct, IEEE Xplore, and MDPI. After removing unrelated articles, duplicate entries, non-English publications, and other articles that did not fulfill the selection criteria, we manually investigated 1559 articles in this review. Most of the articles (45%) were published during a recent four-year stretch (2018-2021), and 19% of the articles were published in 2021 alone. This trend reflects the research community's growing interest in assessing PD with wearable devices, particularly in the last four years of the period under study. We conclude that there is a substantial and steady growth in the use of mobile technology in the PD contexts. We share our automated script and the detailed results with the public, making the review reproducible for future publications.


Assuntos
Doença de Parkinson , Dispositivos Eletrônicos Vestíveis , Humanos , Doença de Parkinson/diagnóstico , Inquéritos e Questionários , Tecnologia
3.
Biochem Biophys Res Commun ; 527(2): 406-410, 2020 06 25.
Artigo em Inglês | MEDLINE | ID: mdl-32331836

RESUMO

The ability to distinguish malignant from indolent prostate cancer cells is critically important for identification of clinically significant prostate cancer to minimize unnecessary overtreatment and sufferings endured by patients who have indolent cancer. Recently, we discovered that loss of giantin function as the primary Golgi targeting site for endoplasmic reticulum-derived transport vesicles in aggressive prostate cancer cells caused a shift of the Golgi localization site of α-mannosidase 1A to 130 KDa Golgi matrix protein (GM130)-65 KDa Golgi reassembly-stacking protein (GRASP65) site resulting in emergence of high mannose N-glycans on trans-Golgi enzymes and cell surface glycoproteins. To extend this observation, we isolated two cell clones (Clone 1 and Clone 2) from high passage LNCaP cells, which exhibited androgen refractory property missing in low passage LNCaP cells, and characterized their malignant property. We have found that comparing to Clone 2, which does not have cell surface high mannose N-glycans and exhibits localization of α-mannosidase 1A at giantin site, Clone 1 displays cell surface high mannose N-glycans, exhibits localization of α-mannosidase 1A at GM130-GRASP65 site, and shows a faster rate of closing the wound in a wound healing assay. The results indicate that Golgi localization of α-mannosidase 1A at GM130-GRASP65 site and appearance of cell surface high mannose N-glycans may serve as markers of malignant prostate cancer cells.


Assuntos
Autoantígenos/análise , Complexo de Golgi/patologia , Proteínas da Matriz do Complexo de Golgi/análise , Manose/análise , Proteínas de Membrana/análise , Neoplasias da Próstata/patologia , Biomarcadores Tumorais/análise , Linhagem Celular Tumoral , Membrana Celular/patologia , Humanos , Masculino , Polissacarídeos/análise
4.
Sensors (Basel) ; 20(18)2020 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-32962046

RESUMO

Human activity recognition (HAR) is growing in popularity due to its wide-ranging applications in patient rehabilitation and movement disorders. HAR approaches typically start with collecting sensor data for the activities under consideration and then develop algorithms using the dataset. As such, the success of algorithms for HAR depends on the availability and quality of datasets. Most of the existing work on HAR uses data from inertial sensors on wearable devices or smartphones to design HAR algorithms. However, inertial sensors exhibit high noise that makes it difficult to segment the data and classify the activities. Furthermore, existing approaches typically do not make their data available publicly, which makes it difficult or impossible to obtain comparisons of HAR approaches. To address these issues, we present wearable HAR (w-HAR) which contains labeled data of seven activities from 22 users. Our dataset's unique aspect is the integration of data from inertial and wearable stretch sensors, thus providing two modalities of activity information. The wearable stretch sensor data allows us to create variable-length segment data and ensure that each segment contains a single activity. We also provide a HAR framework to use w-HAR to classify the activities. To this end, we first perform a design space exploration to choose a neural network architecture for activity classification. Then, we use two online learning algorithms to adapt the classifier to users whose data are not included at design time. Experiments on the w-HAR dataset show that our framework achieves 95% accuracy while the online learning algorithms improve the accuracy by as much as 40%.


Assuntos
Atividades Humanas , Dispositivos Eletrônicos Vestíveis , Algoritmos , Humanos , Redes Neurais de Computação , Smartphone
5.
Sensors (Basel) ; 20(18)2020 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-32937970

RESUMO

Wearable health and activity monitoring devices must minimize the battery charging and replacement requirements to be practical. Numerous design techniques, such as power gating and multiple voltage-frequency (VF) domains, can be used to optimize power consumption. However, circuit-level techniques alone cannot minimize energy consumption unless they exploit domain-specific knowledge. To this end, we propose a system-level framework that minimizes the energy consumption of wearable health and activity monitoring applications by combining domain-specific knowledge with low-power design techniques. The proposed technique finds the energy-optimal VF domain partitioning and the corresponding VF assignments to each partition. We evaluate this framework with experiments on two activity monitoring and one electrocardiogram applications. Our approach decreases the energy consumption by 33-58% when compared to baseline designs. It also achieves 20-46% more savings compared to a state-of-the-art approach.


Assuntos
Monitorização Fisiológica/instrumentação , Dispositivos Eletrônicos Vestíveis , Actigrafia , Fontes de Energia Elétrica , Eletrocardiografia , Humanos
6.
Sensors (Basel) ; 20(3)2020 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-32019219

RESUMO

Wearable internet of things (IoT) devices can enable a variety of biomedical applications,such as gesture recognition, health monitoring, and human activity tracking. Size and weightconstraints limit the battery capacity, which leads to frequent charging requirements and userdissatisfaction. Minimizing the energy consumption not only alleviates this problem, but alsopaves the way for self-powered devices that operate on harvested energy. This paper considers anenergy-optimal gesture recognition application that runs on energy-harvesting devices. We firstformulate an optimization problem for maximizing the number of recognized gestures when energybudget and accuracy constraints are given. Next, we derive an analytical energy model from thepower consumption measurements using a wearable IoT device prototype. Then, we prove thatmaximizing the number of recognized gestures is equivalent to minimizing the duration of gesturerecognition. Finally, we utilize this result to construct an optimization technique that maximizes thenumber of gestures recognized under the energy budget constraints while satisfying the recognitionaccuracy requirements. Our extensive evaluations demonstrate that the proposed analytical modelis valid for wearable IoT applications, and the optimization approach increases the number ofrecognized gestures by up to 2.4× compared to a manual optimization.

7.
Biochim Biophys Acta Gen Subj ; 1861(11 Pt A): 2891-2901, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28782625

RESUMO

BACKGROUND: There is a pressing need for biomarkers that can distinguish indolent from aggressive prostate cancer to prevent over-treatment of patients with indolent tumor. METHODS: Golgi targeting of glycosyltransferases was characterized by confocal microscopy after knockdown of GM130, giantin, or both. N-glycans on a trans-Golgi enzyme ß4galactosyltransferase-1 isolated by immunoprecipitation from androgen-sensitive and independent prostate cancer cells were determined by matrix-assisted laser desorption-time of flight-mass spectrometry. In situ proximity ligation assay was employed to determine co-localization of (a) α-mannosidase IA, an enzyme required for processing Man8GlcNAc2 down to Man5GlcNAc2 to enable synthesis of complex-type N-glycans, with giantin, GM130, and GRASP65, and (b) trans-Golgi glycosyltransferases with high mannose N-glycans terminated with α3-mannose. RESULTS: Defective giantin in androgen-independent prostate cancer cells results in a shift of Golgi targeting of glycosyltransferases and α-mannosidase IA from giantin to GM130-GRASP65. Consequently, trans-Golgi enzymes and cell surface glycoproteins acquire high mannose N-glycans, which are absent in cells with functional giantin. In situ proximity ligation assays of co-localization of α-mannosidase IA with GM130 and GRASP65, and trans-Golgi glycosyltransferases with high mannose N-glycans are negative in androgen-sensitive LNCaP C-33 cells but positive in androgen-independent LNCaP C-81 and DU145 cells, and LNCaP C-33 cells devoid of giantin. CONCLUSION: In situ proximity ligation assays of Golgi localization of α-mannosidase IA at giantin versus GM130-GRASP65 site, and absence or presence of N-glycans terminated with α3-mannose on trans-Golgi glycosyltransferases may be useful for distinguishing indolent from aggressive prostate cancer cells.


Assuntos
Autoantígenos/genética , Biomarcadores Tumorais/biossíntese , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Neoplasias da Próstata/metabolismo , alfa-Manosidase/metabolismo , Autoantígenos/metabolismo , Biomarcadores Tumorais/química , Linhagem Celular Tumoral , Glicosiltransferases/química , Glicosiltransferases/metabolismo , Complexo de Golgi/enzimologia , Complexo de Golgi/metabolismo , Complexo de Golgi/patologia , Proteínas da Matriz do Complexo de Golgi , Humanos , Masculino , Manose/metabolismo , Glicoproteínas de Membrana/química , Glicoproteínas de Membrana/metabolismo , Proteínas de Membrana/antagonistas & inibidores , Polissacarídeos/biossíntese , Polissacarídeos/química , Neoplasias da Próstata/enzimologia , Neoplasias da Próstata/patologia , Ligação Proteica , Transporte Proteico/genética , alfa-Manosidase/química
8.
Alcohol Clin Exp Res ; 40(12): 2573-2590, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27748959

RESUMO

BACKGROUND: It is known that ethanol (EtOH) and its metabolites have a negative effect on protein glycosylation. The fragmentation of the Golgi apparatus induced by alteration of the structure of largest Golgi matrix protein, giantin, is the major consequence of damaging effects of EtOH-metabolism on the Golgi; however, the link between this and abnormal glycosylation remains unknown. Because previously we have shown that Golgi morphology dictates glycosylation, we examined the effect EtOH administration has on function of Golgi residential enzymes involved in N-glycosylation. METHODS: HepG2 cells transfected with mouse ADH1 (VA-13 cells) were treated with 35 mM EtOH for 72 hours. Male Wistar rats were pair-fed Lieber-DeCarli diets for 5 to 8 weeks. Characterization of Golgi-associated mannosyl (α-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), α-1,2-mannosidase (Man-I), and α-mannosidase II (Man-II) were performed in VA-13 cells and rat hepatocytes followed by three-dimensional structured illumination microscopy (3D SIM). RESULTS: First, we detected that EtOH administration results in the loss of sialylated N-glycans on asialoglycoprotein receptor; however, the high-mannose-type N-glycans are increased. Further analysis by 3D SIM revealed that EtOH treatment despite Golgi disorganization does not change cis-Golgi localization for Man-I, but does induce medial-to-cis relocation of MGAT1 and Man-II. Using different approaches, including electron microscopy, we revealed that EtOH treatment results in dysfunction of ADP-ribosylation factor 1 (Arf1) GTPase followed by a deficiency in COPI vesicles at the Golgi. Silencing beta-COP or expression of GDP-bound mutant Arf1(T31N) mimics the EtOH effect on retaining MGAT1 and Man-II at the cis-Golgi, suggesting that (i) EtOH specifically blocks activation of Arf1, and (ii) EtOH alters the proper localization of Golgi enzymes through impairment of COPI. Importantly, the level of MGAT1 was reduced, because likely MGAT1, contrary to Man-I and Man-II, is giantin sensitive. CONCLUSIONS: Thus, we provide the mechanism by which EtOH-induced Golgi remodeling may significantly modify formation of N-glycans.


Assuntos
Etanol/farmacologia , Glicosilação/efeitos dos fármacos , Complexo de Golgi/enzimologia , Fígado/enzimologia , Animais , Complexo de Golgi/efeitos dos fármacos , Complexo de Golgi/ultraestrutura , Hepatócitos/metabolismo , Humanos , Masculino , Manosidases/metabolismo , N-Acetilglucosaminiltransferases/metabolismo , Polissacarídeos/metabolismo , Ratos
9.
Glycobiology ; 25(9): 963-75, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25972125

RESUMO

The sialyl Lewis a and x (sLe(a/x)) antigens frequently displayed on the surface of tumor cells are involved in metastasis. Their synthesis has been attributed to altered expression of selective glycosyltransferases. Identification of these glycosyltransferases and the glycoproteins that carry these carbohydrate antigens should help advance our understanding of selectin-mediated cancer metastasis. In this study, quantitative real-time polymerase chain reaction analysis coupled with in situ proximity ligation assay and small interference RNA treatment shows involvement of ß3galactosyltransferase-V in the synthesis of MUC16-associated sLe(a) in H292 cells. Also, α3fucosyltransferase-V, which is absent in BEAS-2B human immortalized bronchial epithelial cells and A549 lung carcinoma cells, participates in the synthesis of MUC1-associated sLe(x) in CFT1 human immortalized bronchial epithelial cells and H292 lung carcinoma cells. Neither selectin ligand is found on MUC1 in BEAS-2B and A549 cells. Knockdown of either enzyme suppresses migration, and selectin tethering and rolling properties of H292 cells under dynamic flow as determined by wound healing and parallel plate flow chamber assays, respectively. These results provide insights into how the synthesis of mucin-associated selectin ligands and the metastatic properties of cancer cells can be regulated by selective glycosyltransferases that work on mucins. They may help develop novel anticancer drugs.


Assuntos
Movimento Celular , Células Epiteliais/metabolismo , Galactosiltransferases/metabolismo , Glicoproteínas de Membrana/metabolismo , Mucinas/metabolismo , Antígeno CA-19-9 , Adesão Celular , Linhagem Celular Tumoral , Células Epiteliais/fisiologia , Humanos , Glicoproteínas de Membrana/genética , Oligossacarídeos/metabolismo , Antígeno Sialil Lewis X
10.
Molecules ; 20(6): 10848-65, 2015 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-26076107

RESUMO

SRL is a cell wall associated developmental-stage specific lectin secreted by Sclerotium rolfsii, a soil-born pathogenic fungus. SRL displays specificity for TF antigen (Galß1→3GalNAc-α-Ser//Thr) expressed in all cancer types and has tumour suppressing effects in vivo. Considering the immense potential of SRL in cancer research, we have generated two variant gene constructs of SRL and expressed in E. coli to refine the sugar specificity and solubility by altering the surface charge. SSR1 and SSR2 are two different recombinant variants of SRL, both of which recognize TF antigen but only SSR1 binds to Tn antigen (GalNAcα-Ser/Thr). The glycan array analysis of the variants demonstrated that SSR1 recognizes TF antigen and their derivative with high affinity similar to SRL but showed highest affinity towards the sialylated Tn antigen, unlike SRL. The carbohydrate binding property of SSR2 remains unaltered compared to SRL. The crystal structures of the two variants were determined in free form and in complex with N-acetylglucosamine at 1.7 Å and 1.6 Å resolution, respectively. Structural analysis highlighted the structural basis of the fine carbohydrate specificity of the two SRL variants and results are in agreement with glycan array analysis.


Assuntos
Basidiomycota/genética , Clonagem Molecular , Variação Genética , Lectinas/química , Lectinas/genética , Modelos Moleculares , Sequência de Aminoácidos , Basidiomycota/metabolismo , Metabolismo dos Carboidratos , Carboidratos/química , Ligação de Hidrogênio , Lectinas/isolamento & purificação , Lectinas/metabolismo , Dados de Sequência Molecular , Polissacarídeos/metabolismo , Ligação Proteica , Conformação Proteica , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade por Substrato
11.
Glycobiology ; 22(1): 56-69, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21788359

RESUMO

The crystal structure of a ß-prism II (BP2) fold lectin from Remusatia vivipara, a plant of traditional medicinal value, has been determined at a resolution of 2.4 Å. This lectin (RVL, Remusatia vivipara lectin) is a dimer with each protomer having two distinct BP2 domains without a linker between them. It belongs to the "monocot mannose-binding" lectin family, which consists of proteins of high sequence and structural similarity. Though the overall tertiary structure is similar to that of lectins from snowdrop bulbs and garlic, crucial differences in the mannose-binding regions and oligomerization were observed. Unlike most of the other structurally known proteins in this family, only one of the three carbohydrate recognition sites (CRSs) per BP2 domain is found to be conserved. RVL does not recognize simple mannose moieties. RVL binds to only N-linked complex glycans like those present on the gp120 envelope glycoprotein of HIV and mannosylated blood proteins like fetuin, but not to simple mannose moieties. The molecular basis for these features and their possible functional implications to understand the different levels of carbohydrate affinities in this structural family have been investigated through structure analysis, modeling and binding studies. Apart from being the first structure of a lectin to be reported from the Araceae/Arum family, this protein also displays a novel mode of oligomerization among BP2 lectins.


Assuntos
Colocasia , Lectinas de Plantas/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Sítios de Ligação , Configuração de Carboidratos , Sequência de Carboidratos , Cristalografia por Raios X , Proteína gp120 do Envelope de HIV/química , Modelos Moleculares , Dados de Sequência Molecular , Filogenia , Lectinas de Plantas/genética , Polissacarídeos/química , Ligação Proteica , Sinais Direcionadores de Proteínas , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Alinhamento de Sequência , Análise de Sequência de Proteína
12.
J Exp Clin Cancer Res ; 40(1): 289, 2021 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-34521429

RESUMO

BACKGROUND: The development of persistent endoplasmic reticulum (ER) stress is one of the cornerstones of prostate carcinogenesis; however, the mechanism is missing. Also, alcohol is a physiological ER stress inducer, and the link between alcoholism and progression of prostate cancer (PCa) is well documented but not well characterized. According to the canonical model, the mediator of ER stress, ATF6, is cleaved sequentially in the Golgi by S1P and S2P proteases; thereafter, the genes responsible for unfolded protein response (UPR) undergo transactivation. METHODS: Cell lines used were non-malignant prostate epithelial RWPE-1 cells, androgen-responsive LNCaP, and 22RV1 cells, as well as androgen-refractory PC-3 cells. We also utilized PCa tissue sections from patients with different Gleason scores and alcohol consumption backgrounds. Several sophisticated approaches were employed, including Structured illumination superresolution microscopy, Proximity ligation assay, Atomic force microscopy, and Nuclear magnetic resonance spectroscopy. RESULTS: Herein, we identified the trans-Golgi matrix dimeric protein GCC185 as a Golgi retention partner for both S1P and S2P, and in cells lacking GCC185, these enzymes lose intra-Golgi situation. Progression of prostate cancer (PCa) is associated with overproduction of S1P and S2P but monomerization of GCC185 and its downregulation. Utilizing different ER stress models, including ethanol administration, we found that PCa cells employ an elegant mechanism that auto-activates ER stress by fragmentation of Golgi, translocation of S1P and S2P from Golgi to ER, followed by intra-ER cleavage of ATF6, accelerated UPR, and cell proliferation. The segregation of S1P and S2P from Golgi and activation of ATF6 are positively correlated with androgen receptor signaling, different disease stages, and alcohol consumption. Finally, depletion of ATF6 significantly retarded the growth of xenograft prostate tumors and blocks production of pro-metastatic metabolites. CONCLUSIONS: We found that progression of PCa associates with translocation of S1P and S2P proteases to the ER and subsequent ATF6 cleavage. This obviates the need for ATF6 transport to the Golgi and enhances UPR and cell proliferation. Thus, we provide the novel mechanistic model of ATF6 activation and ER stress implication in the progression of PCa, suggesting ATF6 is a novel promising target for prostate cancer therapy.


Assuntos
Estresse do Retículo Endoplasmático , Retículo Endoplasmático/metabolismo , Neoplasias da Próstata/metabolismo , Animais , Linhagem Celular Tumoral , Modelos Animais de Doenças , Progressão da Doença , Complexo de Golgi/metabolismo , Xenoenxertos , Humanos , Masculino , Metaloendopeptidases/metabolismo , Camundongos , ATPases Mitocondriais Próton-Translocadoras/genética , ATPases Mitocondriais Próton-Translocadoras/metabolismo , Pró-Proteína Convertases/metabolismo , Neoplasias da Próstata/etiologia , Neoplasias da Próstata/patologia , Ligação Proteica , Transporte Proteico , Serina Endopeptidases/metabolismo
13.
Glycoconj J ; 27(3): 309-20, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20213246

RESUMO

A mannose-binding lectin (RVL) was purified from the tubers of Remusatia vivipara, a monocot plant by single-step affinity chromatography on asialofetuin-Sepharose 4B. RVL agglutinated only rabbit erythrocytes and was inhibited by mucin, asialomucin, asialofetuin and thyroglobulin. Lectin activity was stable up to 80 degrees C and under wide range of pH (2.0-9.3). SDS-PAGE and gel filtration results showed the lectin is a homotetramer of Mr 49.5 kDa, but MALDI analysis showed two distinct peaks corresponding to subunit mass of 12 kDa and 12.7 kDa. Also the N-terminal sequencing gave two different sequences indicating presence of two polypeptide chains. Cloning of RVL gene indicated posttranslational cleavage of RVL precursor into two mature polypeptides of 116 and 117 amino-acid residues. Dynamic light scattering (DLS) and gel filtration studies together confirmed the homogeneity of the purified lectin and supported RVL as a dimer with Mr 49.5 kDa derived from single polypeptide precursor of 233 amino acids. Purified RVL exerts potent nematicidal activity on Meloidogyne incognita, a root knot nematode. Fluorescent confocal microscopic studies demonstrated the binding of RVL to specific regions of the alimentary-tract and exhibited a potent toxic effect on M. incognita. RVL-mucin complex failed to interact with the gut confirming the receptor mediated lectin interaction. Very high mortality (88%) rate was observed at lectin concentration as low as 30 microg/ml, suggesting its potential application in the development of nematode resistant transgenic-crops.


Assuntos
Magnoliopsida/química , Lectina de Ligação a Manose/isolamento & purificação , Lectina de Ligação a Manose/farmacologia , Tylenchoidea/efeitos dos fármacos , Animais , Cromatografia em Gel , Eletroforese em Gel de Poliacrilamida , Concentração de Íons de Hidrogênio , Lectina de Ligação a Manose/genética , Lectina de Ligação a Manose/metabolismo , Microscopia Confocal , Espalhamento de Radiação , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Temperatura
14.
ACS Chem Biol ; 15(10): 2692-2701, 2020 10 16.
Artigo em Inglês | MEDLINE | ID: mdl-32809798

RESUMO

Various biological processes at the cellular level are regulated by glycosylation which is a highly microheterogeneous post-translational modification (PTM) on proteins and lipids. The dynamic nature of glycosylation can be studied through metabolic incorporation of non-natural sugars into glycan epitopes and their detection using bio-orthogonal probes. However, this approach possesses a significant drawback due to nonspecific background reactions and ambiguity of non-natural sugar metabolism. Here, we report a probe-free strategy for their direct detection by glycoproteomics and glycomics using mass spectrometry (MS). The method dramatically simplifies the detection of non-natural functional group bearing monosaccharides installed through promiscuous sialic acid, N-acetyl-d-galactosamine (GalNAc) and N-acetyl-d-glucosamine (GlcNAc) biosynthetic pathways. Multistage enrichment of glycoproteins by cellular fractionation, subsequent ZIC-HILIC (zwitterionic-hydrophilic interaction chromatography) based glycopeptide enrichment, and a spectral enrichment algorithm for the MS data processing enabled direct detection of non-natural monosaccharides that are incorporated at low abundance on the N/O-glycopeptides along with their natural counterparts. Our approach allowed the detection of both natural and non-natural sugar bearing glycopeptides, N- and O-glycopeptides, differentiation of non-natural monosaccharide types on the glycans and also their incorporation efficiency through quantitation. Through this, we could deduce interconversion of monosaccharides during their processing through glycan salvage pathway and subsequent incorporation into glycan chains. The study of glycosylation dynamics through this method can be conducted in high throughput, as few sample processing steps are involved, enabling understanding of glycosylation dynamics under various external stimuli and thereby could bolster the use of metabolic glycan engineering in glycosylation functional studies.


Assuntos
Glicopeptídeos/análise , Glicoproteínas de Membrana/análise , Espectrometria de Massas em Tandem/métodos , Algoritmos , Sequência de Carboidratos , Linhagem Celular Tumoral , Cromatografia Líquida , Glicômica , Glicopeptídeos/metabolismo , Glicosilação , Humanos , Células Jurkat , Glicoproteínas de Membrana/química , Glicoproteínas de Membrana/metabolismo , Fragmentos de Peptídeos/análise , Fragmentos de Peptídeos/metabolismo , Processamento de Proteína Pós-Traducional , Proteólise , Proteômica , Espectrometria de Massas em Tandem/estatística & dados numéricos
15.
ACS Infect Dis ; 5(3): 385-393, 2019 03 08.
Artigo em Inglês | MEDLINE | ID: mdl-30623643

RESUMO

Stable isotope probing (SIP) has emerged as a powerful tool to address key questions about microbiota structure and function. To date, diverse isotopically labeled substrates have been used to characterize in situ growth activity of specific bacterial taxa and have revealed the flux of bioavailable substrates through microbial communities associated with health and disease. A major limitation to the growth of the field is the dearth of biologically relevant "heavy" labeled substrates. Mucin glycoproteins, for example, comprise an abundant source of carbon in the gut, oral cavity, respiratory tract, and other mucosal surfaces but are not commercially available. Here, we describe a method to incorporate a 13C-labeled monosaccharide into MUC5AC, a predominant mucin in both gastrointestinal and airway environments. Using the lung adenocarcinoma cell line, Calu-3, polarized cell cultures grown in 13C-labeled d-glucose resulted in liberal mucin production on the apical surface. Mucins were isolated by size-exclusion chromatography, and O-linked glycans were released by ß-elimination, permethylated, and analyzed by electrospray ionization tandem mass spectrometry (ESI-MS/MS) and matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) techniques. We demonstrate a 98.7% incorporation of 13C in the heterogeneous O-linked oligosaccharides that make up >80% of mucin dry weight. These "heavy" labeled glycoproteins represent a valuable tool for probing in vivo activity of host-associated bacterial communities and their interactions with the mucosal barrier. The continued expansion of labeled substrates for use in SIP will eventually allow bacterial taxa that degrade host compounds to be identified, with long-term potential for improved health and disease management.


Assuntos
Microbioma Gastrointestinal , Marcação por Isótopo/métodos , Mucina-5AC/química , Oligossacarídeos/química , Animais , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Isótopos de Carbono , Trato Gastrointestinal/química , Trato Gastrointestinal/metabolismo , Trato Gastrointestinal/microbiologia , Glucose/química , Glucose/metabolismo , Humanos , Microbiota , Mucina-5AC/metabolismo , Oligossacarídeos/metabolismo
16.
Immunol Lett ; 163(2): 163-72, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25555439

RESUMO

We have previously reported that a fungal lectin, Rhizoctonia bataticola lectin (RBL), stimulates proliferation and secretion of Th1/Th2 cytokines in human peripheral blood mononuclear cells (PBMC). In the present study, we evaluated the ability of RBL to differentiate human monocytes to macrophages. RBL induced morphological changes indicative of differentiation in primary monocytes and THP-1 cells. Stimulation with RBL resulted in significant up-regulation of differentiation markers - CD54, HLA-DR, CD11b and CD11c and secretion of proinflammatory cytokines - IL-1ß, TNF-α and IL-6. Functionally, RBL profoundly increased phagocytic activity in monocytes. In THP-1 cells, RBL-induced phagocytosis was higher compared to the effect induced by combination of phorbol-12-myristate-13-acetate (PMA) and lipopolysaccharide (LPS). RBL induced a significant increase in matrix metalloproteinase-9 (MMP-9) activity in comparison with a combined treatment of PMA+LPS. Mechanistic studies revealed the involvement of the NF-κB pathway in RBL-induced differentiation of monocytes. The data suggest that RBL mimics the combined action of PMA and LPS to induce morphological and functional differentiation in human monocytes and monocytic cell line - THP-1 to macrophages. Human monocytes differentiated to macrophages with RBL have the potential as an in vitro model to study macrophage biology.


Assuntos
Lectinas/farmacologia , Macrófagos/efeitos dos fármacos , Monócitos/efeitos dos fármacos , Rhizoctonia/química , Ligação Competitiva , Adesão Celular/efeitos dos fármacos , Diferenciação Celular/efeitos dos fármacos , Linhagem Celular Tumoral , Células Cultivadas , Citocinas/metabolismo , Ensaio de Imunoadsorção Enzimática , Citometria de Fluxo , Humanos , Molécula 1 de Adesão Intercelular/metabolismo , Lectinas/metabolismo , Lipopolissacarídeos/farmacologia , Ativação de Macrófagos/efeitos dos fármacos , Macrófagos/metabolismo , Metaloproteinase 9 da Matriz/metabolismo , Microscopia Confocal , Monócitos/metabolismo , NF-kappa B/antagonistas & inibidores , NF-kappa B/metabolismo , Nitrilas/farmacologia , Fagocitose/efeitos dos fármacos , Sulfonas/farmacologia , Acetato de Tetradecanoilforbol/farmacologia
17.
AIDS Res Hum Retroviruses ; 18(18): 1415-23, 2002 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-12512513

RESUMO

Human immunodeficiency virus type 1 (HIV-1) subtype C constitutes a majority of the newly transmitted cases of HIV-1 in many developing countries. There is growing evidence suggesting that subtype C viruses may display characteristics that make them distinct from subtype B and other subtypes, and such differences may affect its transmission and pathogenesis in infected individuals. In this study, HIV-1 sequences from the C2-V4 region of the envelope gene were analyzed from four infected mother-infant pairs (MIPs) after perinatal transmission in Zambia. We found that all viral isolates from four Zambian MIPs were of the subtype C HIV-1 subgroup. All tested isolates were macrophage tropic and did not infect any tested T cell lines or form syncytia in vitro. In addition, the isolates appear to use exclusively the CCR5 coreceptor. Phylogenetic analyses clearly indicated two contrasting phylogenetic transmission patterns for the four MIPs analyzed in the present study. Three cases displayed a pattern of selective transmission of a single or a few variants, and one case was found to transmit multiple maternal HIV-1 variants to her infant. The differences in the mode and timing of transmission may account for the observed transmission pattern among four MIPs.


Assuntos
Proteína gp120 do Envelope de HIV/genética , Infecções por HIV/transmissão , HIV-1/classificação , Transmissão Vertical de Doenças Infecciosas , Filogenia , Adolescente , Adulto , Sequência de Aminoácidos , Feminino , Variação Genética , Proteína gp120 do Envelope de HIV/química , Infecções por HIV/imunologia , Infecções por HIV/virologia , HIV-1/genética , Humanos , Recém-Nascido , Masculino , Dados de Sequência Molecular , Fenótipo , Análise de Sequência de DNA
18.
Toxicon ; 78: 47-57, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24291632

RESUMO

The insect pest Spodoptera litura is considered a major threat to many economically important food and commercial crops. The present study establishes the toxic effects of Sclerotium rolfsii lectin (SRL) against S. litura larvae fed an artificial diet containing the purified lectin. The toxicity of SRL, as determined by feeding assays using different concentrations of the lectin, showed marginal effects on larval growth but a remarkable mortality rate of 68.52 ± 8.48% at the highest lectin concentration, 0.06% (600 µg/g), with an LC50 value of 430 µg/g of artificial diet. SRL is resistant to proteolysis by larval gut proteases even after 24-h incubation. Histochemical studies and western blot analyses of lectin binding revealed the interaction of the lectin with specific membrane glycoproteins on epithelial cells of the midgut. Identification of SRL-interacting midgut membrane proteins using lectin affinity chromatography and ESI-Q-TOF analysis revealed the involvement of these proteins in immunomodulatory responses in insects. Active caspase-3-like activity and DNA fragmentation observed in the midgut epithelial cells of larvae fed a lectin-containing diet supported the mechanism of apoptosis-induced death. These findings suggested that SRL can be a valuable tool in plant biotechnology for developing insect-resistant transgenic crops.


Assuntos
Apoptose/efeitos dos fármacos , Basidiomycota/química , Mucosa Intestinal/metabolismo , Lectinas/farmacologia , Proteínas de Membrana/metabolismo , Spodoptera/efeitos dos fármacos , Animais , Biotecnologia/métodos , Western Blotting , Caspase 3/metabolismo , Cromatografia de Afinidade , Fragmentação do DNA/efeitos dos fármacos , Relação Dose-Resposta a Droga , Imuno-Histoquímica , Mucosa Intestinal/citologia , Larva/efeitos dos fármacos , Lectinas/análise , Lectinas/metabolismo , Ligação Proteica/efeitos dos fármacos
19.
J Urban Health ; 82(3 Suppl 4): iv92-100, 2005 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16107445

RESUMO

Sexual risk behavior interventions in sub-Saharan Africa focus predominantly on individual and couples counseling. This cognitive-behavioral group intervention was adapted from an urban US context to urban Zambia. Preliminary data analyses assessed the influence of partner participation on sexual risk behavior among HIV-positive Zambian women. Female participants (n=180) attended four group intervention sessions and received sexual behavior skill training and male and female condoms; male partners (n=152) were randomly assigned to high- or low-intensity gender-concordant group intervention sessions. Sexual risk behavior, strategies, attitudes, and knowledge were assessed at baseline, 6, and 12 months. At baseline, 19% of males reported using alcohol before sex, 10% reported using alcohol to cope, and negative coping was associated with sexual risk behavior. In contrast, 1% of women reported using alcohol before sex, and 15% used alcohol as an HIV-coping strategy. Consistent barrier use was reported by 48% of women and 74% of men. After intervention, female high intensity participants reported higher rates of condom use (F=5.68, P=.02), more positive condom attitudes, safer sex intentions, and less alcohol use. These findings highlight the influence of male partners in implementation of effective risk reduction interventions.


Assuntos
Infecções por HIV/prevenção & controle , Infecções por HIV/transmissão , Assunção de Riscos , Comportamento Sexual , Parceiros Sexuais , Adulto , Terapia Comportamental , Aconselhamento , Feminino , Conhecimentos, Atitudes e Prática em Saúde , Humanos , Masculino , Inquéritos e Questionários , Zâmbia
20.
Health Policy Plan ; 18(2): 156-62, 2003 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-12740320

RESUMO

BACKGROUND: Between 25 and 44% of mother-to-child transmission (MTCT) of the human immunodeficiency virus (HIV) occurs through breastfeeding. As a result, feeding guidelines for infants of HIV-infected mothers are being formulated in many resource-poor countries. The impact of introducing these guidelines on mothers' actual feeding practices has not previously been examined. Infant-feeding practices of mothers of known HIV status who should have received advice during pre- and post-test HIV counselling were assessed and compared with those of uninfected mothers. METHODS: Mothers of infants aged 2-12 months, 55 HIV-infected and 85 HIV-uninfected, were recruited from the HIV Family Support Unit in Lusaka, Zambia. HIV status was known to 121 of these mothers, who had all received pre- and post-test HIV counselling. Feeding practices were determined by verbal questionnaire. RESULTS: All mothers breastfed but only 35% of infants below 4 months were exclusively breastfed (received breast milk only). HIV-infected mothers introduced fluids and weaned their infants significantly earlier than HIV-uninfected mothers (p = 0.03 and p = 0.002, respectively). Infants of HIV-infected mothers had significantly lower weight for age Z (WAZ) scores indicating poorer nutritional or health status (p = 0.004). Commercial formula milk and cow's milk were used by 36 mothers as breast milk substitutes, and were introduced at a median age of 2.5 months. Thirteen mothers gave cow's milk, and no mother added water to cow's milk (as recommended), with two adding sugar and four adding salt. CONCLUSION: Infant-feeding practices of HIV-infected mothers differed significantly from HIV-uninfected mothers, and this may contribute to their poorer growth. Paradoxically these mothers feeding practice could be putting these infants at greater risk of both non-HIV-related morbidity and HIV transmission, as early introduction of foods other than breast milk may increase MTCT.


Assuntos
Aleitamento Materno/efeitos adversos , Infecções por HIV/transmissão , Transmissão Vertical de Doenças Infecciosas , Mães/psicologia , Adulto , Aleitamento Materno/psicologia , Tomada de Decisões , Feminino , Guias como Assunto , Humanos , Lactente , Alimentos Infantis , Transmissão Vertical de Doenças Infecciosas/prevenção & controle , Zâmbia
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