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1.
Br J Cancer ; 102(1): 87-96, 2010 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-19935792

RESUMEN

BACKGROUND: Collagen and calcium-binding EGF domains 1 (CCBE1) is an uncharacterised gene that has down-regulated expression in breast cancer. As CCBE1 maps to 18q21.32, a region frequently exhibiting loss of heterozygosity in ovarian cancer, the aim of this study was to determine the expression and function of CCBE1 in ovarian cancer. METHODS: Expression and methylation patterns of CCBE1 were determined in ovarian cancer cell lines and primary tumours. CCBE1 contains collagen repeats and an aspartic acid/asparagine hydroxylation/EGF-like domain, suggesting a function in extracellular matrix remodelling and migration, which was determined using small-interfering RNA (siRNA)-mediated knockdown and over-expression of CCBE1 in cell lines. RESULTS: CCBE1 is expressed in normal ovary, but is reduced in ovarian cancer cell lines and primary carcinomas. Pharmacological demethylation/deacetylation in ovarian cancer cell lines re-induced CCBE1 expression, indicating that epigenetic mechanisms contribute to its silencing in cancer. CCBE1 promoter hypermethylation was detected in 6/11 (55%) ovarian cancer cell lines and 38/81 (41%) ovarian carcinomas. siRNA-mediated knockdown of CCBE1 in ovarian cancer cell lines enhanced their migration; conversely, re-expression of CCBE1 reduced migration and survival. Hence, loss of CCBE1 expression may promote ovarian carcinogenesis by enhancing migration and cell survival. CONCLUSIONS: These data suggest that CCBE1 is a new candidate tumour suppressor in ovarian cancer.


Asunto(s)
Proteínas de Unión al Calcio/fisiología , Carcinoma/genética , Metilación de ADN , Regulación Neoplásica de la Expresión Génica , Genes Supresores de Tumor , Proteínas de Neoplasias/fisiología , Neoplasias Ováricas/genética , Regiones Promotoras Genéticas/genética , Proteínas Supresoras de Tumor/fisiología , Mama/citología , Neoplasias de la Mama/patología , Proteínas de Unión al Calcio/genética , Carcinoma/patología , Línea Celular Transformada/metabolismo , Línea Celular Tumoral/citología , Línea Celular Tumoral/efectos de los fármacos , Línea Celular Tumoral/metabolismo , Movimiento Celular/efectos de los fármacos , Movimiento Celular/genética , Supervivencia Celular/efectos de los fármacos , Supervivencia Celular/genética , Células Cultivadas/metabolismo , Islas de CpG/genética , Femenino , Técnicas de Silenciamiento del Gen , Humanos , Proteínas de Neoplasias/genética , Neoplasias Ováricas/patología , Estructura Terciaria de Proteína , ARN Mensajero/biosíntesis , ARN Mensajero/genética , ARN Neoplásico/biosíntesis , ARN Neoplásico/genética , ARN Interferente Pequeño/farmacología , Proteínas Recombinantes de Fusión/fisiología , Ensayo de Tumor de Célula Madre , Proteínas Supresoras de Tumor/genética
2.
Sci Rep ; 9(1): 11334, 2019 08 05.
Artículo en Inglés | MEDLINE | ID: mdl-31383876

RESUMEN

It is routine to genetically modify cells to express fluorescent or bioluminescent reporter proteins to enable tracking or quantification of cells in vitro and in vivo. Herein, we characterized the stability of luciferase reporter systems in C4-2B prostate cancer cells in mono-culture and in co-culture with bone marrow-derived mesenchymal stem/stromal cells (BMSC). An assumption made when employing the luciferase reporter is that the luciferase expressing cell number and bioluminescence signal are linearly proportional. We observed instances where luciferase expression was significantly upregulated in C4-2B cell populations when co-cultured with BMSC, resulting in a significant disconnect between bioluminescence signal and cell number. We subsequently characterized luciferase reporter stability in a second C4-2B reporter cell line, and six other cancer cell lines. All but the single C4-2B reporter cell population had stable luciferase reporter expression in mono-culture and BMSC co-culture. Whole-genome sequencing revealed that relative number of luciferase gene insertions per genome in the unstable C4-2B reporter cell population was lesser than stable C4-2B, PC3 and MD-MBA-231 luciferase reporter cell lines. We reasoned that the low luciferase gene copy number and genome insertion locations likely contributed to the reporter gene expression being exquisitely sensitive BMSC paracrine signals. In this study, we show that it is possible to generate a range of stable and reliable luciferase reporter prostate- and breast- cancer cell populations but advise not to assume stability across different culture conditions. Reporter stability should be validated, on a case-by-case basis, for each cell line and culture condition.


Asunto(s)
Luciferasas/aislamiento & purificación , Mediciones Luminiscentes/métodos , Proteínas Luminiscentes/aislamiento & purificación , Células Madre Mesenquimatosas/metabolismo , Línea Celular Tumoral , Técnicas de Cocultivo , Regulación Neoplásica de la Expresión Génica/genética , Genes Reporteros/genética , Humanos , Luciferasas/química , Proteínas Luminiscentes/química , Masculino , Células Madre Mesenquimatosas/patología , Regiones Promotoras Genéticas/genética , Neoplasias de la Próstata/genética , Neoplasias de la Próstata/patología , Transgenes/genética
3.
Genome Biol ; 18(1): 241, 2017 12 28.
Artículo en Inglés | MEDLINE | ID: mdl-29284497

RESUMEN

BACKGROUND: Genotyping of large populations through genome-wide association studies (GWAS) has successfully identified many genomic variants associated with traits or disease risk. Unexpectedly, a large proportion of GWAS single nucleotide polymorphisms (SNPs) and associated haplotype blocks are in intronic and intergenic regions, hindering their functional evaluation. While some of these risk-susceptibility regions encompass cis-regulatory sites, their transcriptional potential has never been systematically explored. RESULTS: To detect rare tissue-specific expression, we employed the transcript-enrichment method CaptureSeq on 21 human tissues to identify 1775 multi-exonic transcripts from 561 intronic and intergenic haploblocks associated with 392 traits and diseases, covering 73.9 Mb (2.2%) of the human genome. We show that a large proportion (85%) of disease-associated haploblocks express novel multi-exonic non-coding transcripts that are tissue-specific and enriched for GWAS SNPs as well as epigenetic markers of active transcription and enhancer activity. Similarly, we captured transcriptomes from 13 melanomas, targeting nine melanoma-associated haploblocks, and characterized 31 novel melanoma-specific transcripts that include fusion proteins, novel exons and non-coding RNAs, one-third of which showed allelically imbalanced expression. CONCLUSIONS: This resource of previously unreported transcripts in disease-associated regions ( http://gwas-captureseq.dingerlab.org ) should provide an important starting point for the translational community in search of novel biomarkers, disease mechanisms, and drug targets.


Asunto(s)
ADN Intergénico , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Transcripción Genética , Bases de Datos de Ácidos Nucleicos , Sitios Genéticos , Estudio de Asociación del Genoma Completo , Humanos , Intrones , Melanoma/genética , Melanoma/mortalidad , Polimorfismo de Nucleótido Simple , Pronóstico , Neoplasias Cutáneas/genética , Neoplasias Cutáneas/mortalidad , Transcriptoma , Navegador Web , Melanoma Cutáneo Maligno
4.
Endocrinology ; 142(2): 544-50, 2001 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-11159823

RESUMEN

Cardiac myocytes express the two thyroid hormone receptors (T(3)Rs), T(3)Ralpha and T(3)Rbeta. However, which isoform contributes to specific, T(3)-induced alterations of cardiac function remains unclear. Here, we used individual T(3)R isoform knockout (KO) mice to study the effects of T(3)Ralpha and T(3)Rbeta in the heart. Our findings indicate that potassium channel genes that code for K(+) channels involved in action potential repolarization, like KV 4.2 and minK, are T(3)Ralpha targets. Both are markedly regulated by thyroid status. The recently identified cyclic nucleotide-gated channels, HCN2 and HCN4, are targets of T(3)Ralpha and are unchanged in a euthyroid T(3)Rbeta KO. However, these transcripts respond markedly to altered T(3) signaling concomitant with bradycardia in T(3)Ralpha KO and hypothyroid animals, as well as tachycardia in hyperthyroid T(3)Rss KO mice. SERCA2a and myosins are T(3) regulated and were also targets of T(3)Ralpha, and the papillary muscles of alphaKO animals showed a slowed rate of force development. Because of the absence of significant cardiac effects in euthyroid T(3)Rss KO mice, we determined messenger RNA levels for both T(3)Ralpha and T(3)Rss in the heart. We found that T(3)Rss is present at a 1:3 ratio to T(3)Ralpha1. We conclude that the cardiac phenotype regulated by T(3) is predominantly mediated by T(3)Ralpha and that the lack of T(3)Ralpha cannot be compensated by T(3)Rss in the heart.


Asunto(s)
Canales Iónicos/metabolismo , Proteínas Musculares , Contracción Miocárdica/fisiología , Miocardio/metabolismo , Receptores de Hormona Tiroidea/deficiencia , Animales , Proteínas Contráctiles/genética , Canales Catiónicos Regulados por Nucleótidos Cíclicos , Atrios Cardíacos , Frecuencia Cardíaca , Ventrículos Cardíacos , Canales Regulados por Nucleótidos Cíclicos Activados por Hiperpolarización , Técnicas In Vitro , Ratones , Ratones Noqueados/genética , Canales de Potasio/metabolismo , Isoformas de Proteínas/genética , ARN Mensajero/metabolismo , Receptores de Hormona Tiroidea/genética
5.
Endocrinology ; 140(2): 897-902, 1999 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-9927321

RESUMEN

The heart has been recognized as a major target of thyroid hormone action. Our study investigates both the regulation of cardiac-specific genes and contractile behavior of the heart in the presence of a mutant thyroid hormone receptor beta1 (T3Rbeta1-delta337T) derived from the S kindred. The mutant receptor was originally identified in a patient with generalized resistance to thyroid hormone. Cardiac expression of the mutant receptor was achieved by a transgenic approach in mice. As the genes for myosin heavy chains (MHC alpha and MHC beta) and the cardiac sarcoplasmic reticulum Ca2+ adenosine triphosphatase (SERCA2) are known to be regulated by T3, their cardiac expression was analyzed. The messenger RNA levels for MHC alpha and SERCA2 were markedly down-regulated, MHC beta messenger RNA was up-regulated. Although T3 levels were normal in these animals, this pattern of cardiac gene expression mimics a hypothyroid phenotype. Cardiac muscle contraction was significantly prolonged in papillary muscles from transgenic mice. The electrocardiogram of transgenic mice showed a substantial prolongation of the QRS interval. Changes in cardiac gene expression, cardiac muscle contractility, and electrocardiogram are compatible with a hypothyroid cardiac phenotype despite normal T3 levels, indicating a dominant negative effect of the T3Rbeta mutant.


Asunto(s)
Corazón/fisiología , Mutación/fisiología , Receptores de Hormona Tiroidea/genética , Triyodotironina/fisiología , Animales , ATPasas Transportadoras de Calcio/genética , Resistencia a Medicamentos/genética , Electrocardiografía , Femenino , Dosificación de Gen , Expresión Génica/fisiología , Ratones , Ratones Endogámicos BALB C , Ratones Transgénicos/genética , Contracción Miocárdica/fisiología , Cadenas Pesadas de Miosina/genética , Fenotipo , Retículo Sarcoplasmático/enzimología
6.
Endocrinology ; 141(9): 3057-64, 2000 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-10965874

RESUMEN

Thyroid hormones influence the function of many organs and mediate their diverse actions through two types of thyroid hormone receptors, TRalpha and TRbeta. Little is known about effects of ligands that preferentially interact with the two different TR subtypes. In the current study the comparison of the effects of the novel synthetic TRbeta-selective compound GC-1 with T3 at equimolar doses in hypothyroid mice revealed that GC-1 had better triglyceride-lowering and similar cholesterol-lowering effects than T3. T3, but not GC-1, increased heart rate and elevated messenger RNA levels coding for the I(f) channel (HCN2), a cardiac pacemaker that was decreased in hypothyroid mice. T3 had a larger positive inotropic effect than GC-1. T3, but not GC-1, normalized heart and body weights and messenger RNAs of myosin heavy chain alpha and beta and the sarcoplasmic reticulum adenosine triphosphatase (Serca2). Additional dose-response studies in hypercholesteremic rats confirmed the preferential effect of GC-1 on TRbeta-mediated parameters by showing a much higher potency to influence cholesterol and TSH than heart rate. The preferred accumulation of GC-1 in the liver vs. the heart probably also contributes to its marked lipid-lowering effect vs. the absent effect on heart rate. These data indicate that GC-1 could represent a prototype for new drugs for the treatment of high lipid levels or obesity.


Asunto(s)
Acetatos/farmacología , Corazón/efectos de los fármacos , Lípidos/sangre , Fenoles/farmacología , Receptores de Hormona Tiroidea/agonistas , Acetatos/farmacocinética , Animales , Northern Blotting , Peso Corporal/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Hemodinámica/efectos de los fármacos , Hipercolesterolemia/genética , Hipolipemiantes/farmacología , Hipotiroidismo/genética , Masculino , Ratones , Tamaño de los Órganos/efectos de los fármacos , Fenoles/farmacocinética , ARN Mensajero/biosíntesis , Ratas , Ratas Sprague-Dawley , Tiroxina/sangre , Triyodotironina/sangre , Triyodotironina/farmacocinética , Triyodotironina/farmacología
7.
Ann Acad Med Singap ; 17(2): 232-7, 1988 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-2841899

RESUMEN

Human papillomaviruses are found in up to 90% of all cervical carcinomas and are considered to play a causal role in the etiology of this malignancy. The genome of human papillomaviruses consists of a single circular DNA molecule with a size of approximately 8000 basepairs. 90% of this genome encodes proteins involved in functions such as neoplastic transformation of the host cell or formation of the viral capsid. The remaining 10% of the genome, which is termed upstream regulatory region (URR), harbours elements to control expression of the viral genes. We have identified in the URR DNA elements that regulate viral gene expression in the presence of glucocorticoid hormones or tumour promoting substances. This was done by DNase I protection experiments and functional analysis of fusion genes. Our data predict that the transforming potential of the virus might be stimulated by certain steroid hormones, polypeptide hormones and tumour promoting chemicals.


Asunto(s)
Papillomaviridae/genética , Neoplasias del Cuello Uterino/microbiología , Clonación Molecular , ADN Viral/análisis , ADN Viral/genética , ADN Viral/metabolismo , Proteínas de Unión al ADN/fisiología , Elementos de Facilitación Genéticos , Femenino , Regulación de la Expresión Génica/efectos de los fármacos , Genes Virales , Humanos , Ésteres del Forbol/farmacología , Receptores de Glucocorticoides/fisiología , Factores de Riesgo
8.
Acta Biol Hung ; 41(1-3): 159-71, 1990.
Artículo en Inglés | MEDLINE | ID: mdl-1965560

RESUMEN

Ionizing and UV radiations induce amplification of SV40 DNA sequences integrated in the genome of Chinese hamster cells and increase amplification of the dihydrofolate reductase (DHFR) gene during methotrexate selection in human skin fibroblasts of a patient with ataxia telangiectasia. By cell fusion experiments it could be shown that SV40 gene amplification is mediated by one or several diffusible trans-acting factors induced or activated in a dose dependent manner by all types of radiation. One of these factors binds to a 10 bp sequence within the minimal origin of replication of SV40. In vivo competition with an excess of a synthetic oligonucleotide comprising this sequence blocks radiation-induced amplification.


Asunto(s)
Amplificación de Genes/efectos de la radiación , Animales , Ataxia Telangiectasia/enzimología , Ataxia Telangiectasia/genética , Secuencia de Bases , Línea Celular , Cricetinae , ADN/genética , ADN/efectos de la radiación , Replicación del ADN/genética , Replicación del ADN/efectos de la radiación , Humanos , Datos de Secuencia Molecular , Virus 40 de los Simios/genética , Tetrahidrofolato Deshidrogenasa/genética
10.
Br J Cancer ; 98(6): 1085-93, 2008 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-18349819

RESUMEN

Despite a high initial response rate to first-line platinum/paclitaxel chemotherapy, most women with epithelial ovarian cancer relapse with recurrent disease that becomes refractory to further cytotoxic treatment. We have previously shown that the E3 ubiquitin ligase, EDD, a regulator of DNA damage responses, is amplified and overexpressed in serous ovarian carcinoma. Given that DNA damage pathways are linked to platinum resistance, the aim of this study was to determine if EDD expression was associated with disease recurrence and platinum sensitivity in serous ovarian cancer. High nuclear EDD expression, as determined by immunohistochemistry in a cohort of 151 women with serous ovarian carcinoma, was associated with an approximately two-fold increased risk of disease recurrence and death in patients who initially responded to first-line chemotherapy, independently of disease stage and suboptimal debulking. Although EDD expression was not directly correlated with relative cisplatin sensitivity of ovarian cancer cell lines, sensitivity to cisplatin was partially restored in platinum-resistant A2780-cp70 ovarian cancer cells following siRNA-mediated knockdown of EDD expression. These results identify EDD as a new independent prognostic marker for outcome in serous ovarian cancer, and suggest that pathways involving EDD, including DNA damage responses, may represent new therapeutic targets for chemoresistant ovarian cancer.


Asunto(s)
Cisplatino/farmacología , Resistencia a Antineoplásicos , Neoplasias Ováricas/metabolismo , Ubiquitina-Proteína Ligasas/metabolismo , Línea Celular Tumoral , Cistadenocarcinoma Seroso , Femenino , Humanos , Persona de Mediana Edad , Recurrencia Local de Neoplasia , Neoplasias Ováricas/tratamiento farmacológico , Pronóstico , Estudios Retrospectivos
11.
J Virol ; 64(11): 5577-84, 1990 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-2170687

RESUMEN

The E6/E7 promoter of all genital human papillomaviruses is responsible for expression of the viral transforming genes. Centered 60 bp upstream of the transcription start, it contains a 20-bp segment with partially overlapping binding sites for the viral E2 proteins and for a cellular factor that was identified by footprint experiments. Bandshifts, bandshift competitions, and footprints revealed that protein complexes between nuclear extracts and these sequences have binding properties indistinguishable from those of the Sp1 factor that binds the simian virus 40 early promoter GC motif. Reactions of these complexes with anti-Sp1 antiserum were analyzed by superbandshifts and precipitation with protein A, and the results confirmed the identity of this transcription factor as Sp1. Sp1 binds in simian virus 40 and different human papillomavirus promoters the consensus sequence 5'-NGGNGN-3'. RNase protection analysis of in vitro or in vivo transcriptions with wild-type and mutant test vectors shows that the E6/E7 promoter of human papillomavirus type 16 is functionally dependent on the Sp1 distal promoter element. In all genital papillomaviruses, the Sp1 hexamer is invariably spaced by a single nucleotide from the distal E2 element, suggesting some precise interaction between Sp1 and E2 proteins. Published experimental evidence documents negative regulation of the E6/E7 promoter by E2 proteins through the proximal E2 element, whereas only minor quantitative differences in E6/E7 promoter function after cotransfection with E2 expression vectors were observed in this study. A detailed study of the interactions of Sp1 and E2 proteins with one another and with the corresponding three binding sites may reveal a complex modulation of this promoter.


Asunto(s)
Proteínas de Unión al ADN/genética , Regulación Viral de la Expresión Génica , Papillomaviridae/genética , Regiones Promotoras Genéticas , Factor de Transcripción Sp1/genética , Proteínas Virales/genética , Secuencia de Bases , Sitios de Unión , Células Cultivadas , Clonación Molecular , ADN Viral/metabolismo , Humanos , Técnicas In Vitro , Datos de Secuencia Molecular , Proteínas Nucleares/metabolismo , Secuencias Reguladoras de Ácidos Nucleicos , Factor de Transcripción Sp1/metabolismo , Transcripción Genética
12.
Cancer Detect Prev ; 12(1-6): 23-9, 1988.
Artículo en Inglés | MEDLINE | ID: mdl-2846169

RESUMEN

The 7905 bp genomic DNA of the human papilloma virus type 16 (HPV-16), which is associated with invasive cervical neoplasia, contains a 832 bp upstream regulatory region (URR) supposed to contain most of its cis-acting promoter elements. A search for DNA sequences known to bind transcription factors has resulted in the recognition of numerous consensus sequences. A functional analysis of a segment of this URR containing some of these consensus sequences has resulted in the recognition of an enhancer element, that is functional only in human HeLa, but not in human MCF7 cells. The same region contains an element that confers regulatibility by glucocorticoid hormones, but not by sex steroids, to a linked promoter.


Asunto(s)
Elementos de Facilitación Genéticos , Glucocorticoides/farmacología , Transcripción Genética , Infecciones Tumorales por Virus , Neoplasias del Cuello Uterino/genética , Secuencia de Bases , Femenino , Humanos , Datos de Secuencia Molecular , Papillomaviridae/genética , Neoplasias del Cuello Uterino/microbiología
13.
EMBO J ; 6(12): 3735-43, 1987 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-2828035

RESUMEN

The upstream regulatory region of the human papilloma virus-16 (HPV-16) genomic DNA contains a sequence element with a large degree of homology to the partially palindromic sequence GGTACANNNTGTTCT, which is the consensus sequence of the glucocorticoid responsive elements of known genes regulated by this steroid hormone. DNase I and dimethylsulfate protection experiments reveal the binding of this sequence by rat glucocorticoid receptor protein. A 400-bp DNA segment centrally containing this sequence confers strong inducibility by dexamethasone to the promoter p97 of HPV-16 and to the Herpes simplex virus thymidine kinase promoter, as judged by chloramphenicol acetyltransferase activity and RNase protection assays. The same DNA segment, that does not contain the consensus sequences of all papilloma viruses relevant for E2 protein-mediated transcription enhancement, functions in an enhancer-like fashion in addition to its glucocorticoid responsive action. This hormone-independent transcription enhancement is absent in human MCF7 cells, but is strong in human HeLa cells where the combined activity of the constitutive and the steroid hormone-dependent enhancer elements stimulate transcription by a factor of 500. This cell type specificity of the HPV-16 enhancer may be responsible for the tissue tropism of the virus. These observations and the presence of numerous homologies to known enhancers of cellular and viral genes suggest a complex pattern of activation of the human papilloma virus-16 promoters.


Asunto(s)
Proteínas de Unión al ADN , Elementos de Facilitación Genéticos , Genes Reguladores , Genes Virales , Proteínas Oncogénicas Virales/genética , Papillomaviridae/genética , Regiones Promotoras Genéticas , Neoplasias del Cuello Uterino/genética , Secuencia de Bases , Línea Celular , Dexametasona/farmacología , Dihidrotestosterona/farmacología , Elementos de Facilitación Genéticos/efectos de los fármacos , Femenino , Genes/efectos de los fármacos , Genes Reguladores/efectos de los fármacos , Genes Virales/efectos de los fármacos , Humanos , Datos de Secuencia Molecular , Papillomaviridae/efectos de los fármacos , Homología de Secuencia de Ácido Nucleico , Simplexvirus/genética , Transcripción Genética/efectos de los fármacos , Transfección
14.
J Virol ; 63(3): 1142-52, 1989 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-2536825

RESUMEN

The long control region of the human papillomavirus type 16 genome is 856 base pairs (bp) long. It contains a cell-type-specific enhancer, a glucocorticoid response element, and sequences mediating the response to the viral gene products of open reading frame E2; all three regulate the promoter P97. We mapped binding sites of trans-acting proteins relevant for the cell-type-specific enhancer and other cis-acting elements by DNase I footprint experiments with nuclear extracts from HeLa cells. Throughout the human papillomavirus type 16 long control region 23 footprints protect 557 of 900 bp. Nine footprints fall into a 400-bp segment that was previously identified to contain the cell-type-specific enhancer. Variations of the protein concentration in the footprint reaction do not affect six of these nine footprints. At high protein concentrations, three footprints fuse to a 106-bp protected region, suggesting that this segment specifically binds several proteins of lower affinity or abundance. Unexpectedly, extracts from human MCF7 and mouse 3T3 cells, in which the enhancer is inactive, give footprints identical to those obtained with HeLa extracts. Seven footprints contain the sequence 5'-TTGGC-3'. Footprint competition experiments suggest that factor NFI binds to these seven motifs. Competition with cloned oligonucleotides in transfections suggests that these elements contribute to the enhancer function. Subcloning identifies a 232-bp fragment between positions 7524 and 7755 as sufficient for full enhancer activity. Several of the six footprinted elements on this segment may cooperate functionally, since subclones of this region show decreased or no cell-type-specific enhancer function.


Asunto(s)
ADN Viral/metabolismo , Proteínas de Unión al ADN/metabolismo , Elementos de Facilitación Genéticos , Proteínas Nucleares/metabolismo , Papillomaviridae/metabolismo , Secuencias Reguladoras de Ácidos Nucleicos , Animales , Secuencia de Bases , Sitios de Unión , Línea Celular , ADN Viral/genética , Desoxirribonucleasa I/metabolismo , Humanos , Ratones , Datos de Secuencia Molecular , Regiones Promotoras Genéticas , Transcripción Genética , Replicación Viral
15.
Nucleic Acids Res ; 20(2): 251-6, 1992 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-1311070

RESUMEN

The principal early promoter of human papillomaviruses (HPVs), designated P97 in the case of HPV-16, contains four characteristically aligned cis-responsive elements, namely one binding site for Sp1, two for the viral E2 proteins, and the TATA box. The Sp1 binding site is needed to mediate activation of P97 by the remote epithelial-specific enhancer, and the two E2 binding sites contribute to a negative feedback-loop of viral gene expression. The Sp1 consensus motif and the TATA-box distal E2 binding site are spaced in all genital papillomaviruses by a single nucleotide. We show here that at physiological concentrations, the binding of E2 proteins and Sp1 are mutually exclusive events, since a bandshift analysis with nuclear extracts from ID13, a mouse cell line transformed by BPV-1, showed only the E2 or the Sp1 bandshift, but no complex indicative of the concomitant binding of both factors. Increasing concentrations of in vitro translated E2 protein compete efficiently with the Sp1 factor for binding to an oligonucleotide containing both binding sites. Interference between Sp1 and E2 protein binding is apparently relevant for P97 repression in vivo, since a mutational analysis revealed that both E2 binding sites are necessary for negative transcriptional regulation: Alone, neither the distal site, where E2 protein can induce Sp1 displacement, nor the proximal site, where E2 protein interferes with formation and function of the pre-initiation complex, have a significant effect, but two functional E2 binding sites lead to repression of P97.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Proteínas Oncogénicas Virales/genética , Papillomaviridae/genética , Regiones Promotoras Genéticas/genética , Proteínas Represoras , Factor de Transcripción Sp1/metabolismo , Transactivadores/metabolismo , Proteínas Virales/metabolismo , Animales , Secuencia de Bases , Regulación Viral de la Expresión Génica/fisiología , Humanos , Ratones , Datos de Secuencia Molecular , Regiones Promotoras Genéticas/fisiología , Transfección/genética , Células Tumorales Cultivadas
16.
J Virol ; 65(11): 5933-43, 1991 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-1656080

RESUMEN

The enhancer of human papillomavirus type 16 (HPV-16) is considered to be specific for epithelial cells, in particular for cervical carcinoma-derived cell lines. We reexamined this hypothesis with the complete enhancer as well as nonoverlapping subclones and found all clones to be active in epithelial cell lines derived from the epidermis and from carcinomas of the cervix, mammary gland, and colon, but inactive in fibroblast, lymphoma, and embryonal carcinoma cells. Although the virus infects only human mucosal epithelia, enhancer activity was independent of the exact type or of the species of origin of the transfected epithelial cell. In spite of epithelial cell specificity, we found that the activity of the HPV-16 enhancer varied strongly from a cytomegalovirus enhancer and the simian virus 40 enhancer in a cell line-dependent manner. This suggests varying quantitative contributions of enhancer elements rather than regulation by an all-or-none switch. Cell type specificity was maintained by a 91-bp subclone of the 400-bp enhancer. Most of the enhancer activity of this fragment was eliminated by alternative mutations in binding sites for the ubiquitous factors AP-1, nuclear factor 1 (NF1), or TEF-2. These three types of factors bind this 91-bp enhancer without cooperation, although activation appears to be synergistic. Outside the 91-bp fragment, a motif typical for papillomavirus enhancers, namely an octamerlike sequence flanked by an NF1-binding site, contributes to enhancer function, as the activity was strongly reduced upon its deletion. In HPV-16, this motif is bound by the oct-1 factor as well as by a probably novel factor, NFA, whereas a related motif of HPV-11 is recognized only by NFA. On examination, none of the five types of transcription factors involved in HPV enhancer activation was restricted to epithelial cells, but NF1, AP-1, and oct-1 were present in higher concentration in HeLa cells than in fibroblasts. Only NF1 showed some qualitative cell type-specific differences. We propose that the epithelial specificity of the HPV-16 enhancer is brought about via binding sites for supposed ubiquitous transcription factors. The mechanism of this activation apparently involves synergism between factors that vary in concentration and may include cell-specific functional differences residing outside the DNA-binding domain of these factors.


Asunto(s)
Elementos de Facilitación Genéticos , Papillomaviridae/genética , Factores de Transcripción/metabolismo , Transcripción Genética , Células 3T3 , Animales , Secuencia de Bases , Sitios de Unión , Línea Celular , Epitelio/fisiología , Fibroblastos/fisiología , Vectores Genéticos , Células HeLa , Humanos , Ratones , Datos de Secuencia Molecular , Oligodesoxirribonucleótidos , Papillomaviridae/metabolismo , Mapeo Restrictivo , Homología de Secuencia de Ácido Nucleico
17.
Nature ; 324(6098): 686-8, 1986.
Artículo en Inglés | MEDLINE | ID: mdl-2879246

RESUMEN

Transcriptional activation of gene expression by glucocorticoid hormones is mediated by the interaction of hormone-receptor complexes with specific DNA sequences called glucocorticoid responsive elements (GREs) (refs 1-3, see ref. 4 for review). Deletion of this sequence abolishes glucocorticoid induction of transcription. According to a current model, activation of the cytoplasmic receptor protein by hormone binding leads to its increased affinity for and translocation to the nucleus. However, recent reports that the oestradiol and progesterone receptors are localized in the nucleus in the absence of steroid led us to examine whether the free receptor interacts in vivo with its DNA binding site in the absence of hormone binding. We used the genomic footprinting technique to show that changes in in vivo protein-DNA interactions within the GREs of the tyrosine aminotransferase gene (TAT) can be detected only after hormone treatment in hepatoma cells. Such changes are not detected in fibroblast cells, in which the TAT gene is not expressed. Many of the changes in dimethylsulphate reactivity observed in the living cell are also found in vitro using cloned DNA and a partially purified glucocorticoid receptor.


Asunto(s)
ADN/metabolismo , Dexametasona/farmacología , Genes , Receptores de Glucocorticoides/metabolismo , Tirosina Transaminasa/genética , Animales , Línea Celular , ADN/genética , Desoxirribonucleasa I , Neoplasias Hepáticas Experimentales/metabolismo , Ratas , Receptores de Glucocorticoides/aislamiento & purificación , Ésteres del Ácido Sulfúrico/farmacología , Transcripción Genética/efectos de los fármacos , Triamcinolona/metabolismo
18.
J Gen Virol ; 75 ( Pt 10): 2663-70, 1994 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-7931152

RESUMEN

The transforming genes E6 and E7 of human papillomavirus (HPV) type 16 and other HPV types are expressed from a bicistronic mRNA with a characteristic spacing of 3 to 6 bp between the termination codon of E6 and the initiation codon of E7. Plasmid pSP64E6E7 which contains the reading frames of both E6 and E7 was constructed in order to study the expression of both proteins in a coupled transcription/rabbit reticulocyte translation system. Both E6 and E7 proteins were expressed simultaneously. This translation could be interfered with by antisense oligonucleotides corresponding to various regions of the transcript. Antisense oligonucleotides targeted at sequences flanking either side of the translation initiation codon of the E6 open reading frame were effective in inhibiting the synthesis of both proteins, whereas oligonucleotides complementary to the coding regions downstream of the first start codon showed either a considerably reduced effect or none at all. In particular, there was limited inhibition of E7 translation by antisense oligonucleotides flanking the translation start region of the E7 gene. In the presence of RNase H, it was possible to selectively inhibit the synthesis of either E6 or E7 by several gene-internal antisense oligonucleotides. We conclude that HPV16 E6-E7 bicistronic mRNA is fully functional and that both proteins are translated with equal efficiency via the scanning mechanisms with reinitiation at the second open reading frame. In addition, both AE6 and AE7 may have therapeutical potential as they are capable of inhibiting the proliferation of CaSki cells which contain the HPV16 genome.


Asunto(s)
Genes Virales , Proteínas Oncogénicas Virales/biosíntesis , Papillomaviridae/genética , Biosíntesis de Proteínas , ARN Mensajero/metabolismo , Proteínas Represoras , Proteínas Estructurales Virales/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Línea Celular , Cartilla de ADN , Femenino , Humanos , Datos de Secuencia Molecular , Oligodesoxirribonucleótidos , Oligonucleótidos Antisentido/farmacología , Papillomaviridae/efectos de los fármacos , Papillomaviridae/fisiología , Proteínas E7 de Papillomavirus , Plásmidos , Reacción en Cadena de la Polimerasa , ARN Viral/metabolismo , Conejos , Reticulocitos/metabolismo , Transcripción Genética , Células Tumorales Cultivadas , Neoplasias del Cuello Uterino , Replicación Viral
19.
EMBO J ; 6(3): 625-30, 1987 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-3582368

RESUMEN

Transcription of the gene coding for tryptophan oxygenase (TO) in rat liver is induced 10-fold by glucocorticoids. To identify DNA elements mediating the glucocorticoid-regulated expression of the TO gene we transfected mouse L cells with a fusion gene consisting of 1.95 kb TO 5'-flanking sequences linked to the coding sequence of the gene for chloramphenicol acetyltransferase (CAT). CAT assay and RNA mapping experiments demonstrate that both transient and stable expression of the TO-CAT fusion gene are inducible by dexamethasone. Analysis of transcripts from 5'-deletion mutants identifies two glucocorticoid-responsive elements (GRE), located 450 bp and 1.2 kb upstream of the cap site. The purified rat glucocorticoid receptor binds to the sequence of each GRE as evidenced from footprinting experiments. Interestingly the protected sequence of the proximal footprint is by itself not sufficient for sequence induction, but requires sequences located immediately upstream.


Asunto(s)
Dexametasona/farmacología , Genes/efectos de los fármacos , Triptófano Oxigenasa/genética , Adrenalectomía , Animales , Secuencia de Bases , Deleción Cromosómica , Clonación Molecular , ADN/aislamiento & purificación , Inducción Enzimática , Femenino , Células L/enzimología , Ratones , Mutación , Ratas , Receptores de Glucocorticoides/aislamiento & purificación , Receptores de Glucocorticoides/metabolismo , Transcripción Genética , Triptófano Oxigenasa/biosíntesis
20.
Am J Physiol Endocrinol Metab ; 278(4): E738-43, 2000 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-10751209

RESUMEN

We investigated the effects of the leukemia inhibitory factor (LIF) and interleukin-6 (IL-6) on 3,3', 5-triiodo-L-thyronine, or thyroid hormone (T(3))-stimulated sarcoplasmic reticulum Ca(2+) ATPase (SERCA2) gene expression on cultured neonatal rat cardiac myocytes. A reduction of T(3) induced increases in SERCA2 mRNA levels after co-treatment with LIF or IL-6. To investigate for the molecular mechanism(s) responsible for the blunted gene expression, a 3.2-kb SERCA2 promoter construct containing a reporter gene was transfected into cardiac myocytes. T(3) treatment stimulated transcriptional activity twofold, whereas co-treatment with T(3) and either of the cytokines caused an inhibition of T(3)-induced SERCA2 transcriptional activity. A T(3)-responsive 0.6-kb SERCA2 construct also showed a similar inhibition by cytokines. Cytokine inhibition of SERCA2 transcriptional activity was also evident when a 0.6-kb SERCA2 mutant, T(3)-unresponsive promoter construct was used. Treatment with T(3) and cytokines showed a significant decrease in transcription when a reporter construct was used that was comprised of direct repeats of SERCA2 thyroid response element I. These data provide evidence for cytokine-mediated inhibitory effects on the SERCA2 promoter that may be mediated by interfering with T(3) action.


Asunto(s)
Antitiroideos/farmacología , ATPasas Transportadoras de Calcio/biosíntesis , Inhibidores de Crecimiento/farmacología , Interleucina-6/farmacología , Linfocinas/farmacología , Retículo Sarcoplasmático/enzimología , Hormonas Tiroideas/farmacología , Animales , Animales Recién Nacidos , Northern Blotting , ATPasas Transportadoras de Calcio/genética , Células Cultivadas , Regulación hacia Abajo/efectos de los fármacos , Factor Inhibidor de Leucemia , Contracción Miocárdica/efectos de los fármacos , Miocardio/metabolismo , Plásmidos/genética , ARN Mensajero/biosíntesis , ARN Mensajero/genética , Ratas , Retículo Sarcoplasmático/efectos de los fármacos , Estimulación Química , Transcripción Genética/genética , Transfección/genética
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