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1.
J Mol Cell Cardiol ; 142: 118-125, 2020 05.
Artículo en Inglés | MEDLINE | ID: mdl-32278834

RESUMEN

INTRODUCTION: Troponin (TNN)-encoded cardiac troponins (Tn) are critical for sensing calcium and triggering myofilament contraction. TNN variants are associated with development of cardiomyopathy; however, recent advances in genetic analysis have identified rare population variants. It is unclear how certain variants are associated with disease while others are tolerated. OBJECTIVE: To compare probands with TNNT2, TNNI3, and TNNC1 variants and utilize high-resolution variant comparison mapping of pathologic and rare population variants to identify loci associated with disease pathogenesis. METHODS: Cardiomyopathy-associated TNN variants were identified in the literature and topology mapping conducted. Clinical features were compiled and compared. Rare population variants were obtained from the gnomAD database. Signal-to-noise (S:N) normalized pathologic variant frequency against population variant frequency. Abstract review of clinical phenotypes was applied to "significant" hot spots. RESULTS: Probands were compiled (N = 70 studies, 224 probands) as were rare variants (N = 125,748 exomes; 15,708 genomes, MAF <0.001). TNNC1-positive probands demonstrated the youngest age of presentation (20.0 years; P = .016 vs TNNT2; P = .004 vs TNNI3) and the highest death, transplant, or ventricular fibrillation events (P = .093 vs TNNT2; P = .024 vs TNNI3; Kaplan Meir: P = .025). S:N analysis yielded hot spots of diagnostic significance within the tropomyosin-binding domains, α-helix 1, and the N-Terminus in TNNT2 with increased sudden cardiac death and ventricular fibrillation (P = .004). The inhibitory region and C-terminal region in TNNI3 exhibited increased restrictive cardiomyopathy (P =.008). HCM and RCM models tended to have increased calcium sensitivity and DCM decreased sensitivity (P < .001). DCM and HCM studies typically showed no differences in Hill coefficient which was decreased in RCM models (P < .001). CM models typically demonstrated no changes to Fmax (P = .239). CONCLUSION: TNNC1-positive probands had younger ages of diagnosis and poorer clinical outcomes. Mapping of TNN variants identified locations in TNNT2 and TNNI3 associated with heightened pathogenicity, RCM diagnosis, and increased risk of sudden death.


Asunto(s)
Alelos , Cardiomiopatías/genética , Cardiomiopatías/mortalidad , Predisposición Genética a la Enfermedad , Variación Genética , Sitios de Carácter Cuantitativo , Troponina/genética , Edad de Inicio , Sustitución de Aminoácidos , Cardiomiopatías/diagnóstico , Mapeo Cromosómico , Bases de Datos Genéticas , Estudios de Asociación Genética , Genotipo , Humanos , Evaluación del Resultado de la Atención al Paciente , Pronóstico , Troponina/metabolismo , Troponina I/genética , Troponina T/genética
2.
Nat Rev Neurosci ; 14(3): 202-16, 2013 03.
Artículo en Inglés | MEDLINE | ID: mdl-23385869

RESUMEN

A systematic classification and accepted nomenclature of neuron types is much needed but is currently lacking. This article describes a possible taxonomical solution for classifying GABAergic interneurons of the cerebral cortex based on a novel, web-based interactive system that allows experts to classify neurons with pre-determined criteria. Using Bayesian analysis and clustering algorithms on the resulting data, we investigated the suitability of several anatomical terms and neuron names for cortical GABAergic interneurons. Moreover, we show that supervised classification models could automatically categorize interneurons in agreement with experts' assignments. These results demonstrate a practical and objective approach to the naming, characterization and classification of neurons based on community consensus.


Asunto(s)
Algoritmos , Corteza Cerebral/citología , Interneuronas/clasificación , Interneuronas/citología , Terminología como Asunto , Ácido gamma-Aminobutírico/metabolismo , Animales , Teorema de Bayes , Corteza Cerebral/metabolismo , Análisis por Conglomerados , Humanos , Interneuronas/metabolismo
3.
J Trauma Stress ; 30(3): 323-327, 2017 06.
Artículo en Inglés | MEDLINE | ID: mdl-28569390

RESUMEN

The construction of trauma narratives is a major component of several psychotherapy approaches for trauma-related problems, but questions remain as to whether fully expressive narratives are necessary and whether it is detrimental to ask avoidant youths to tell their narratives repeatedly. Characteristics of trauma narratives during psychotherapy have not been examined in youths and this represents a salient gap in knowledge. This study aimed to begin filling this gap by identifying categories of trauma narratives and empirically validating them. Youths (N = 47) aged 7 to 18 years, who were involved in a randomized controlled trial, received cognitive behavioral therapy. Transcripts of all narrative exposure therapy sessions for each youth were rated. Four categories were identified and were named expressive, avoidant, fabricated, and undemonstrative. Interrater reliability for identifying these categories was good, and face validation of the categories was supported by statistically significant differences between categories on the number of data elements of the trauma events, negative emotion words, and positive emotion words. These promising findings indicate that different types of narrative styles can be reliably identified. There was strong evidence for reduction of posttraumatic stress symptoms in each of the categories (Cohen's d = 0.9 to 2.5). Favorable treatment outcomes for all categories suggest that more remembering is not always better and clients appeared to effectively deal with memories in different ways.


Asunto(s)
Terapia Cognitivo-Conductual/métodos , Terapia Narrativa/métodos , Trastornos por Estrés Postraumático/terapia , Adolescente , Niño , Femenino , Humanos , Masculino , Trastornos por Estrés Postraumático/clasificación , Resultado del Tratamiento
4.
Proc Natl Acad Sci U S A ; 110(24): 9950-5, 2013 Jun 11.
Artículo en Inglés | MEDLINE | ID: mdl-23671070

RESUMEN

A cardinal symptom of major depressive disorder (MDD) is the disruption of circadian patterns. However, to date, there is no direct evidence of circadian clock dysregulation in the brains of patients who have MDD. Circadian rhythmicity of gene expression has been observed in animals and peripheral human tissues, but its presence and variability in the human brain were difficult to characterize. Here, we applied time-of-death analysis to gene expression data from high-quality postmortem brains, examining 24-h cyclic patterns in six cortical and limbic regions of 55 subjects with no history of psychiatric or neurological illnesses ("controls") and 34 patients with MDD. Our dataset covered ~12,000 transcripts in the dorsolateral prefrontal cortex, anterior cingulate cortex, hippocampus, amygdala, nucleus accumbens, and cerebellum. Several hundred transcripts in each region showed 24-h cyclic patterns in controls, and >100 transcripts exhibited consistent rhythmicity and phase synchrony across regions. Among the top-ranked rhythmic genes were the canonical clock genes BMAL1(ARNTL), PER1-2-3, NR1D1(REV-ERBa), DBP, BHLHE40 (DEC1), and BHLHE41(DEC2). The phasing of known circadian genes was consistent with data derived from other diurnal mammals. Cyclic patterns were much weaker in the brains of patients with MDD due to shifted peak timing and potentially disrupted phase relationships between individual circadian genes. This transcriptome-wide analysis of the human brain demonstrates a rhythmic rise and fall of gene expression in regions outside of the suprachiasmatic nucleus in control subjects. The description of its breakdown in MDD suggests potentially important molecular targets for treatment of mood disorders.


Asunto(s)
Encéfalo/metabolismo , Ritmo Circadiano/genética , Trastorno Depresivo Mayor/genética , Perfilación de la Expresión Génica , Factores de Transcripción ARNTL , Adulto , Anciano , Autopsia , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/genética , Relojes Circadianos/genética , Femenino , Proteínas de Homeodominio/genética , Humanos , Masculino , Persona de Mediana Edad , Miembro 1 del Grupo D de la Subfamilia 1 de Receptores Nucleares/genética , Análisis de Secuencia por Matrices de Oligonucleótidos , Proteínas Circadianas Period/genética
5.
Genome Med ; 16(1): 53, 2024 04 03.
Artículo en Inglés | MEDLINE | ID: mdl-38570875

RESUMEN

BACKGROUND: NODAL signaling plays a critical role in embryonic patterning and heart development in vertebrates. Genetic variants resulting in perturbations of the TGF-ß/NODAL signaling pathway have reproducibly been shown to cause laterality defects in humans. To further explore this association and improve genetic diagnosis, the study aims to identify and characterize a broader range of NODAL variants in a large number of individuals with laterality defects. METHODS: We re-analyzed a cohort of 321 proband-only exomes of individuals with clinically diagnosed laterality congenital heart disease (CHD) using family-based, rare variant genomic analyses. To this cohort we added 12 affected subjects with known NODAL variants and CHD from institutional research and clinical cohorts to investigate an allelic series. For those with candidate contributory variants, variant allele confirmation and segregation analysis were studied by Sanger sequencing in available family members. Array comparative genomic hybridization and droplet digital PCR were utilized for copy number variants (CNV) validation and characterization. We performed Human Phenotype Ontology (HPO)-based quantitative phenotypic analyses to dissect allele-specific phenotypic differences. RESULTS: Missense, nonsense, splice site, indels, and/or structural variants of NODAL were identified as potential causes of heterotaxy and other laterality defects in 33 CHD cases. We describe a recurrent complex indel variant for which the nucleic acid secondary structure predictions implicate secondary structure mutagenesis as a possible mechanism for formation. We identified two CNV deletion alleles spanning NODAL in two unrelated CHD cases. Furthermore, 17 CHD individuals were found (16/17 with known Hispanic ancestry) to have the c.778G > A:p.G260R NODAL missense variant which we propose reclassification from variant of uncertain significance (VUS) to likely pathogenic. Quantitative HPO-based analyses of the observed clinical phenotype for all cases with p.G260R variation, including heterozygous, homozygous, and compound heterozygous cases, reveal clustering of individuals with biallelic variation. This finding provides evidence for a genotypic-phenotypic correlation and an allele-specific gene dosage model. CONCLUSION: Our data further support a role for rare deleterious variants in NODAL as a cause for sporadic human laterality defects, expand the repertoire of observed anatomical complexity of potential cardiovascular anomalies, and implicate an allele specific gene dosage model.


Asunto(s)
Cardiopatías Congénitas , Síndrome de Heterotaxia , Transposición de los Grandes Vasos , Animales , Humanos , Arterias , Hibridación Genómica Comparativa , Cardiopatías Congénitas/genética , Síndrome de Heterotaxia/genética , Fenotipo
6.
Proc Natl Acad Sci U S A ; 107(39): 16999-7004, 2010 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-20837535

RESUMEN

Immune molecules have been discovered recently to play critical roles in the development, function, and plasticity of the cerebral cortex. MHC class I (MHCI) molecules are expressed in the central nervous system and regulate activity-dependent refinement of visual projections during late postnatal development. They have also been implicated in neurodevelopmental diseases such as schizophrenia and autism. Despite the excitement generated by these unique roles for immune proteins in the brain, little is known about how these molecules regulate cortical connections. The first step toward elucidating the mechanism is to identify the spatial and temporal distribution of MHCI proteins throughout development. Using a pan-specific antibody that recognizes many MHCI variants for biochemistry and immunohistochemistry, we found that MHCI proteins are expressed in the rat visual cortex at all ages examined-during the peak of synaptogenesis, the critical period of synaptic refinement, and adulthood. Their abundance in the cortex peaked during early postnatal development, declining during periods of plasticity and adulthood. In contrast to current assumptions, pre- and postembedding immunogold electron microscopy (EM) revealed that MHCI proteins were present both pre- and postsynaptically at all ages examined. They were often found in the postsynaptic density and were closely associated with synaptic vesicles in the presynaptic terminal. These results suggest a previously undescribed model in which MHCI molecules function on both sides of the synapse to regulate connectivity in the mammalian visual cortex before, during, and after the establishment of connections.


Asunto(s)
Antígenos de Histocompatibilidad Clase I/metabolismo , Sinapsis/inmunología , Corteza Visual/crecimiento & desarrollo , Corteza Visual/inmunología , Animales , Anticuerpos Monoclonales/inmunología , Axones/inmunología , Dendritas/inmunología , Microscopía Electrónica , Ratas , Ratas Long-Evans
7.
Proc Natl Acad Sci U S A ; 106(18): 7501-6, 2009 May 05.
Artículo en Inglés | MEDLINE | ID: mdl-19416921

RESUMEN

Bipolar disorder (BP) is a disabling and often life-threatening disorder that affects approximately 1% of the population worldwide. To identify genetic variants that increase the risk of BP, we genotyped on the Illumina HumanHap550 Beadchip 2,076 bipolar cases and 1,676 controls of European ancestry from the National Institute of Mental Health Human Genetics Initiative Repository, and the Prechter Repository and samples collected in London, Toronto, and Dundee. We imputed SNP genotypes and tested for SNP-BP association in each sample and then performed meta-analysis across samples. The strongest association P value for this 2-study meta-analysis was 2.4 x 10(-6). We next imputed SNP genotypes and tested for SNP-BP association based on the publicly available Affymetrix 500K genotype data from the Wellcome Trust Case Control Consortium for 1,868 BP cases and a reference set of 12,831 individuals. A 3-study meta-analysis of 3,683 nonoverlapping cases and 14,507 extended controls on >2.3 M genotyped and imputed SNPs resulted in 3 chromosomal regions with association P approximately 10(-7): 1p31.1 (no known genes), 3p21 (>25 known genes), and 5q15 (MCTP1). The most strongly associated nonsynonymous SNP rs1042779 (OR = 1.19, P = 1.8 x 10(-7)) is in the ITIH1 gene on chromosome 3, with other strongly associated nonsynonymous SNPs in GNL3, NEK4, and ITIH3. Thus, these chromosomal regions harbor genes implicated in cell cycle, neurogenesis, neuroplasticity, and neurosignaling. In addition, we replicated the reported ANK3 association results for SNP rs10994336 in the nonoverlapping GSK sample (OR = 1.37, P = 0.042). Although these results are promising, analysis of additional samples will be required to confirm that variant(s) in these regions influence BP risk.


Asunto(s)
Trastorno Bipolar/genética , Cromosomas Humanos Par 1/genética , Cromosomas Humanos Par 3/genética , Cromosomas Humanos Par 5/genética , Genoma Humano , Europa (Continente) , Estudio de Asociación del Genoma Completo , Humanos
8.
J Pers Med ; 12(5)2022 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-35629155

RESUMEN

Background: Hypertrophic cardiomyopathy (HCM) is the most common heritable cardiomyopathy and can predispose individuals to sudden death. Most pediatric HCM patients host a known pathogenic variant in a sarcomeric gene. With the increase in exome sequencing (ES) in clinical settings, incidental variants in HCM-associated genes are being identified more frequently. Diagnostic interpretation of incidental variants is crucial to enhance clinical patient management. We sought to use amino acid-level signal-to-noise (S:N) analysis to establish pathogenic hotspots in sarcomeric HCM-associated genes as well as to refine the 2015 American College of Medical Genetics (ACMG) criteria to predict incidental variant pathogenicity. Methods and Results: Incidental variants in HCM genes (MYBPC3, MYH7, MYL2, MYL3, ACTC1, TPM1, TNNT2, TNNI3, and TNNC1) were obtained from a clinical ES referral database (Baylor Genetics) and compared to rare population variants (gnomAD) and variants from HCM literature cohort studies. A subset of the ES cohort was clinically evaluated at Texas Children's Hospital. We compared the frequency of ES and HCM variants at specific amino acid locations in coding regions to rare variants (MAF < 0.0001) in gnomAD. S:N ratios were calculated at the gene- and amino acid-level to identify pathogenic hotspots. ES cohort variants were re-classified using ACMG criteria with S:N analysis as a correlate for PM1 criteria, which reduced the burden of variants of uncertain significance. In the clinical validation cohort, the majority of probands with cardiomyopathy or family history hosted likely pathogenic or pathogenic variants. Conclusions: Incidental variants in HCM-associated genes were common among clinical ES referrals, although the majority were not disease-associated. Leveraging amino acid-level S:N as a clinical tool may improve the diagnostic discriminatory ability of ACMG criteria by identifying pathogenic hotspots.

9.
Cereb Cortex ; 20(10): 2261-4, 2010 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-20667930

RESUMEN

The function of any brain structure depends on its neuronal composition and on the pattern of its extrinsic and intrinsic excitatory and inhibitory synaptic connectivity. In this issue of Cerebral Cortex, 3 related papers provide the most comprehensive analysis to date of the cellular and synaptic relationships of a standard cortical column in the somatosensory cortex of the Wistar rat. It is hoped that understanding normal composition of this archetypical cortical column may help to explain its functional operations, expose subtle pathological changes that could cause abnormal sensory and cognitive functions, and provide insight into evolution of the cerebral cortex.


Asunto(s)
Neuronas/fisiología , Corteza Somatosensorial/citología , Corteza Somatosensorial/fisiología , Vibrisas/inervación , Animales , Mapeo Encefálico , Vías Nerviosas/fisiología , Ratas
10.
Proc Natl Acad Sci U S A ; 105(52): 21000-5, 2008 Dec 30.
Artículo en Inglés | MEDLINE | ID: mdl-19064919

RESUMEN

Auditory hair cell defect is a major cause of hearing impairment, often leading to spiral ganglia neuron (SGN) degeneration. The cell loss that follows is irreversible in mammals, because inner ear hair cells (HCs) have a limited capacity to regenerate. Here, we report that in the adult brain of both rodents and humans, the ependymal layer of the lateral ventricle contains cells with proliferative potential, which share morphological and functional characteristics with HCs. In addition, putative neural stem cells (NSCs) from the subventricular zone of the lateral ventricle can differentiate into functional SGNs. Also important, the NSCs can incorporate into the sensory epithelia, demonstrating their therapeutic potential. We assert that NSCs and edendymal cells can undergo an epigenetic functional switch to assume functional characteristics of HCs and SGNs. This study suggests that the functional plasticity of renewable cells and conditions that promote functional reprogramming can be used for cell therapy in the auditory setting.


Asunto(s)
Diferenciación Celular/fisiología , Epéndimo/citología , Células Ciliadas Auditivas/citología , Regeneración/fisiología , Ganglio Espiral de la Cóclea/citología , Células Madre/citología , Animales , Células Cultivadas , Epéndimo/metabolismo , Células Ciliadas Auditivas/metabolismo , Humanos , Ratones , Ratones Transgénicos , Células Madre/metabolismo
11.
Proc Natl Acad Sci U S A ; 105(37): 14157-62, 2008 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-18780780

RESUMEN

New neurons are continuously generated in restricted regions of the adult mammalian brain. Although these adult-born neurons have been shown to receive synaptic inputs, little is known about their synaptic outputs. Using retrovirus-mediated birth-dating and labeling in combination with serial section electron microscopic reconstruction, we report that mossy fiber en passant boutons of adult-born dentate granule cells form initial synaptic contacts with CA3 pyramidal cells within 2 weeks after their birth and reach morphologic maturity within 8 weeks in the adult hippocampus. Knockdown of Disrupted-in-Schizophrenia-1 (DISC1) in newborn granule cells leads to defects in axonal targeting and development of synaptic outputs in the adult brain. Together with previous reports of synaptic inputs, these results demonstrate that adult-born neurons are fully integrated into the existing neuronal circuitry. Our results also indicate a role for DISC1 in presynaptic development and may have implications for the etiology of schizophrenia and related mental disorders.


Asunto(s)
Envejecimiento/fisiología , Fibras Musgosas del Hipocampo/crecimiento & desarrollo , Neuronas/citología , Sinapsis/fisiología , Animales , Animales Recién Nacidos , Femenino , Ratones , Ratones Endogámicos C57BL , Microscopía Electrónica , Fibras Musgosas del Hipocampo/ultraestructura , Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Neuronas/metabolismo , Interferencia de ARN , Sinapsis/ultraestructura
12.
J Neurosci ; 29(12): 3738-48, 2009 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-19321770

RESUMEN

The mechanisms responsible for long-term, massive reorganization of representational maps in primate somatosensory cortex after deafferentation are poorly understood. Sprouting of cortical axons cannot account for the extent of reorganization, and withdrawal of axons of deafferented brainstem and thalamic neurons, permitting expression of previously silent synapses, has not been directly demonstrated. This study is focused on the second of these. In monkeys, deafferented for two years by section of the cuneate fasciculus at the C1 level, there was extensive withdrawal of axon terminals from thalamus and cortex, detectable a decade before visible atrophy of their parent neuronal somata in the cuneate nucleus or thalamus. Slow, inexorable progression of lemniscal and thalamocortical axonal withdrawal is a neurodegenerative phenomenon likely to be a powerful inducement to compensatory long-term plasticity, a mechanism that can explain the long-term evolution of cortical reorganization and, with it, phantom sensations in spinal patients and amputees.


Asunto(s)
Axones/patología , Corteza Cerebral/patología , Traumatismos de los Nervios Periféricos , Vías Aferentes/patología , Vías Aferentes/fisiopatología , Animales , Atrofia , Tronco Encefálico/patología , Tronco Encefálico/fisiopatología , Corteza Cerebral/fisiopatología , Desnervación , Macaca mulatta , Bulbo Raquídeo/patología , Bulbo Raquídeo/fisiopatología , Plasticidad Neuronal , Neuronas/patología , Nervios Periféricos/patología , Nervios Periféricos/fisiopatología , Terminales Presinápticos/patología , Corteza Somatosensorial/patología , Corteza Somatosensorial/fisiopatología , Tálamo/patología , Tálamo/fisiopatología , Factores de Tiempo
13.
PLoS Comput Biol ; 5(3): e1000334, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19325892

RESUMEN

In this era of complete genomes, our knowledge of neuroanatomical circuitry remains surprisingly sparse. Such knowledge is critical, however, for both basic and clinical research into brain function. Here we advocate for a concerted effort to fill this gap, through systematic, experimental mapping of neural circuits at a mesoscopic scale of resolution suitable for comprehensive, brainwide coverage, using injections of tracers or viral vectors. We detail the scientific and medical rationale and briefly review existing knowledge and experimental techniques. We define a set of desiderata, including brainwide coverage; validated and extensible experimental techniques suitable for standardization and automation; centralized, open-access data repository; compatibility with existing resources; and tractability with current informatics technology. We discuss a hypothetical but tractable plan for mouse, additional efforts for the macaque, and technique development for human. We estimate that the mouse connectivity project could be completed within five years with a comparatively modest budget.


Asunto(s)
Encéfalo/anatomía & histología , Encéfalo/fisiología , Bases de Datos Factuales , Modelos Neurológicos , Red Nerviosa/anatomía & histología , Red Nerviosa/fisiología , Neuroanatomía/métodos , Proyectos de Investigación , Animales , Humanos , Macaca , Ratones
14.
Cereb Cortex ; 19(9): 1953-6, 2009 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-19429862

RESUMEN

The neocortex of primates, including humans, is thought to contain significantly higher numbers and more diverse forms of gamma-aminobutyric acidergic (GABAergic) interneurons than that of rodents. The mouse cortex displays a number of other features that distinguish it from the cortex of primates and suggest a somewhat less complex pattern of organization. Nevertheless, dramatic findings on the origins and migratory patterns of newly specified GABAergic cortical interneurons in the embryonic mouse have led to a prevailing view that GABAergic cortical interneurons of all species are born in the ganglionic eminence and undergo the same long tangential migration toward the cortex that is seen in the mouse. Recent observations in fetal human and monkey brains, although clearly identifying GABAergic neurons that reach the neocortex via the tangential route, also demonstrate that substantial numbers of GABA neurons are generated in the lateral ventricular neuroepithelium and migrate into the cortex via the same radial route followed by glutamatergic neurons. In the course of evolution of the higher primate cortex, it is likely that new forms of cortical interneuron with origins in the ventricular neuroepithelium have been added to an older population derived from the ganglionic eminence.


Asunto(s)
Evolución Biológica , Corteza Cerebral , Haplorrinos , Interneuronas , Animales , Corteza Cerebral/citología , Corteza Cerebral/fisiología , Haplorrinos/genética , Interneuronas/citología , Interneuronas/fisiología , Especificidad de la Especie , Humanos , Ratones
15.
Nat Neurosci ; 9(5): 611-21, 2006 May.
Artículo en Inglés | MEDLINE | ID: mdl-16617342

RESUMEN

A key step in glutamatergic synapse maturation is the replacement of developmentally expressed N-methyl-D-aspartate receptors (NMDARs) with mature forms that differ in subunit composition, electrophysiological properties and propensity to elicit synaptic plasticity. However, the mechanisms underlying the removal and replacement of synaptic NMDARs are poorly understood. Here we demonstrate that NMDARs containing the developmentally regulated NR3A subunit undergo rapid endocytosis from the dendritic plasma membrane in cultured rat hippocampal neurons. This endocytic removal is regulated by PACSIN1/syndapin1, which directly and selectively binds the carboxy-terminal domain of NR3A through its NPF motifs and assembles a complex of proteins including dynamin and clathrin. Endocytosis of NR3A by PACSIN1 is activity dependent, and disruption of PACSIN1 function causes NR3A accumulation at synaptic sites. Our results reveal a new activity-dependent mechanism involved in the regulation of NMDAR expression at synapses during development, and identify a brain-specific endocytic adaptor that confers spatiotemporal and subunit specificity to NMDAR endocytosis.


Asunto(s)
Endocitosis/fisiología , Glicoproteínas de Membrana/fisiología , Neuronas/citología , Proteoglicanos/fisiología , Receptores de N-Metil-D-Aspartato/metabolismo , Sinapsis/metabolismo , Animales , Western Blotting/métodos , Células Cultivadas , Clonación Molecular/métodos , Electrofisiología/métodos , Embrión de Mamíferos , Endocitosis/efectos de los fármacos , Técnica del Anticuerpo Fluorescente/métodos , Proteínas Fluorescentes Verdes/metabolismo , Hipocampo/citología , Humanos , Hibridación in Situ/métodos , Glicoproteínas de Membrana/genética , Microscopía Inmunoelectrónica/métodos , Mutación/fisiología , N-Metilaspartato/farmacología , Neuronas/efectos de los fármacos , Proteoglicanos/genética , Ratas , Receptores de N-Metil-D-Aspartato/genética , Sinapsis/efectos de los fármacos , Sinapsis/ultraestructura , Sindecanos , Transfección/métodos , Técnicas del Sistema de Dos Híbridos
16.
J Neurosci ; 28(46): 12010-22, 2008 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-19005066

RESUMEN

In anthropoid primates, cells in the magnocellular and parvocellular layers of the dorsal lateral geniculate nucleus (dLGN) are distinguished by unique retinal inputs, receptive field properties, and laminar terminations of their axons in visual cortex. To identify genes underlying these phenotypic differences, we screened RNA from magnocellular and parvocellular layers of adult macaque dLGN for layer-specific differences in gene expression. Real-time quantitative reverse transcription-PCR and in situ hybridization were used to confirm gene expression in adult and fetal macaque. Cellular localization of gene expression revealed 11 new layer-specific markers, of which 10 were enriched in magnocellular layers (BRD4, CAV1, EEF1A2, FAM108A1, INalpha, KCNA1, NEFH, NEFL, PPP2R2C, and SFRP2) and one was enriched in parvocellular and koniocellular layers (TCF7L2). These markers relate to functions involved in development, transcription, and cell signaling, with Wnt/beta-catenin and neurofilament pathways figuring prominently. A subset of markers was differentially expressed in the fetal dLGN during a developmental epoch critical for magnocellular and parvocellular pathway formation. These results provide new evidence for the molecular differentiation of magnocellular and parvocellular streams through the primate dLGN.


Asunto(s)
Expresión Génica/genética , Cuerpos Geniculados/citología , Cuerpos Geniculados/metabolismo , Proteínas del Tejido Nervioso/metabolismo , Neuronas/citología , Neuronas/metabolismo , Animales , Biomarcadores/análisis , Biomarcadores/metabolismo , Tipificación del Cuerpo/genética , Cuerpos Geniculados/embriología , Conos de Crecimiento/metabolismo , Conos de Crecimiento/ultraestructura , Macaca fascicularis , Macaca mulatta , Masculino , Proteínas del Tejido Nervioso/análisis , Proteínas del Tejido Nervioso/genética , Proteínas de Neurofilamentos/genética , Proteínas de Neurofilamentos/metabolismo , Neurogénesis/genética , ARN Mensajero/análisis , ARN Mensajero/metabolismo , Vías Visuales/citología , Vías Visuales/embriología , Vías Visuales/metabolismo , Percepción Visual/genética , Proteínas Wnt/genética , Proteínas Wnt/metabolismo
17.
J Neurosci Methods ; 178(1): 46-54, 2009 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-19070632

RESUMEN

Laser capture microdissection (LCM) permits isolation of specific cell types and cell groups based upon morphology, anatomical landmarks and histochemical properties. This powerful technique can be used for region-specific dissection if the target structure is clearly delineated. However, it is difficult to visualize anatomical boundaries in an unstained specimen, while histological staining can complicate the microdissection process and compromise downstream processing and analysis. We now introduce a novel method in which in situ hybridization (ISH) signal is used to guide LCM on adjacent unstained sections to collect tissue from neurochemically defined regions of the human postmortem brain to minimize sample manipulation prior to analysis. This approach was validated in nuclei that provide monoaminergic inputs to the forebrain, and likely contribute to the pathophysiology of mood disorders. This method was used successfully to carry out gene expression profiling and quantitative real-time PCR (qPCR) confirmation from the dissected material. When compared to traditional micropunch dissections, our ISH-guided LCM method provided enhanced signal intensity for mRNAs of specific monoaminergic marker genes as measured by genome-wide gene expression microarrays. Enriched expression of specific monoaminergic genes (as determined by microarrays and qPCR) was detected within appropriate anatomical locations validating the accuracy of microdissection. Together these results support the conclusion that ISH-guided LCM permits acquisition of enriched nucleus-specific RNA that can be successfully used for downstream gene expression investigations. Future studies will utilize this approach for gene expression profiling of neurochemically defined regions of postmortem brains collected from mood disorder patients.


Asunto(s)
Encéfalo/metabolismo , Perfilación de la Expresión Génica/métodos , Hibridación in Situ/métodos , Rayos Láser , Microdisección/métodos , Proteínas del Tejido Nervioso/metabolismo , Adolescente , Adulto , Anciano , Análisis de Varianza , Encéfalo/anatomía & histología , Núcleo Celular/química , Núcleo Celular/metabolismo , Femenino , Expresión Génica/fisiología , Humanos , Masculino , Análisis por Micromatrices/métodos , Persona de Mediana Edad , Proteínas del Tejido Nervioso/genética , Cambios Post Mortem , ARN Mensajero/metabolismo
18.
J Vis Exp ; (143)2019 01 16.
Artículo en Inglés | MEDLINE | ID: mdl-30735170

RESUMEN

Advancements in the cost and speed of next generation genetic sequencing have generated an explosion of clinical whole exome and whole genome testing. While this has led to increased identification of likely pathogenic mutations associated with genetic syndromes, it has also dramatically increased the number of incidentally found genetic variants of unknown significance (VUS). Determining the clinical significance of these variants is a major challenge for both scientists and clinicians. An approach to assist in determining the likelihood of pathogenicity is signal-to-noise analysis at the protein sequence level. This protocol describes a method for amino acid-level signal-to-noise analysis that leverages variant frequency at each amino acid position of the protein with known protein topology to identify areas of the primary sequence with elevated likelihood of pathologic variation (relative to population "background" variation). This method can identify amino acid residue location "hotspots" of high pathologic signal, which can be used to refine the diagnostic weight of VUSs such as those identified by next generation genetic testing.


Asunto(s)
Aminoácidos/genética , Variación Genética , Relación Señal-Ruido , Frecuencia de los Genes/genética , Humanos , Canal de Potasio KCNQ1/genética , Funciones de Verosimilitud , Mutación , Proteínas/genética
19.
Sci Rep ; 9(1): 9038, 2019 06 21.
Artículo en Inglés | MEDLINE | ID: mdl-31227780

RESUMEN

Junctophilin-2 (JPH2) is a part of the junctional membrane complex that facilitates calcium-handling in the cardiomyocyte. Previously, missense variants in JPH2 have been linked to hypertrophic cardiomyopathy; however, pathogenic "loss of function" (LOF) variants have not been described. Family-based genetic analysis of GME individuals with cardiomyopathic disease identified an Iranian patient with dilated cardiomyopathy (DCM) as a carrier of a novel, homozygous single nucleotide insertion in JPH2 resulting in a stop codon (JPH2-p.E641*). A second Iranian family with consanguineous parents hosting an identical heterozygous variant had 2 children die in childhood from cardiac failure. To characterize ethnicity-dependent genetic variability in JPH2 and to identify homozygous JPH2 variants associated with cardiac disease, we identified variants in JPH2 in a worldwide control cohort (gnomAD) and 2 similar cohorts from the Greater Middle East (GME Variome, Iranome). These were compared against ethnicity-matched clinical whole exome sequencing (WES) referral tests and a case cohort of individuals with hypertrophic cardiomyopathy (HCM) based on comprehensive review of the literature. Worldwide, 1.45% of healthy individuals hosted a rare JPH2 variant with a significantly higher proportion among GME individuals (4.45%); LOF variants were rare overall (0.04%) yet were most prevalent in GME (0.21%). The increased prevalence of LOF variants in GME individuals was corroborated among region-specific, clinical WES cohorts. In conclusion, we report ethnic-specific differences in JPH2 rare variants, with GME individuals being at higher risk of hosting homozygous LOF variants. This conclusion is supported by the identification of a novel JPH2 LOF variant confirmed by segregation analysis resulting in autosomal recessive pediatric DCM due to presumptive JPH2 truncation.


Asunto(s)
Cardiomiopatía Dilatada/genética , Homocigoto , Enfermedades del Recién Nacido/genética , Proteínas de la Membrana/genética , Proteínas Musculares/genética , Estudios de Cohortes , Humanos , Recién Nacido , Medio Oriente , Secuenciación del Exoma
20.
Brain Res Rev ; 55(2): 248-55, 2007 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-17659350

RESUMEN

This essay commences with a consideration of the relative contributions of Cajal and Golgi to the study of the anatomy of the nervous system. It demonstrates the extent to which Cajal depended upon Golgi's work and how his modifications of the Golgi technique permitted a remarkable series of investigations in which the foundations of the neuron doctrine were laid and in which the intrinsic connectivity of virtually every part of the central nervous system was charted. Cajal's readiness to seize on and develop new techniques was one of the many keys to his success. After him, neuroanatomical studies tended to be focused more on long tract connectivity, using techniques such as those of Nissl and Marchi that had been in place before Cajal commenced his studies. Development of degeneration-based techniques of tracing connections in the late 1950s spearheaded a revolution in neuroanatomy while introduction of mixed aldehyde fixation made possible similarly intensive studies of the fine structure of the nervous system. At this time, the Golgi technique experienced a brief resurgence as neuroanatomists made efforts to bridge the gap between light and electron microscopy. Later developments in techniques for tracing connections included anterograde tracing by autoradiography and retrograde tracing by horseradish peroxidase. These were soon superseded by tracing techniques of increasing sensitivity and specificity that rely upon the cellular and molecular biology of neurons. Although neuroanatomy in its traditional form is perhaps no longer fashionable as a discipline, the techniques of neuroanatomy remain preeminent in many, perhaps all areas of neuroscience.


Asunto(s)
Neuroanatomía/historia , Neuroanatomía/métodos , Tinción con Nitrato de Plata/historia , Animales , Historia del Siglo XIX , Historia del Siglo XX , Humanos
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