Surveillance of West Nile virus in horses in Canada: A retrospective study of cases reported to the Canadian Food Inspection Agency from 2003 to 2019.

The objectives of the study were to describe the regional and provincial incidence rates and the weekly distribution of 842 reported West Nile virus (WNV) cases in horses in Canada between 2003 and 2019. This study also investigated characteristics of cases reported to the Canadian Food Inspection Agency (CFIA) between 2015 and 2019. The western region (British Columbia, Alberta, Saskatchewan, and Manitoba) had higher incidence rates than the eastern region (Ontario, Quebec, and Atlantic provinces) and overall, Saskatchewan registered the highest incidence. Over the study period, an earlier weekly preliminary onset of WNV cases was observed in the western region. The vast majority of cases were unvaccinated (96%), most cases were Quarter Horses (68%) and the risk of mortality was 31.9%. The findings of this study may be useful in informing veterinary equine practitioners about measures to prevent WNV disease in horses in Canada.

La surveillance du virus du Nil occidental chez les équins au Canada : une étude rétrospective des cas notifiés à l'Agence canadienne d'inspection des aliments de 2003 à 2019. Les objectifs de cette étude étaient de décrire les taux d'incidence régionaux et provinciaux, ainsi que la distribution hebdomadaire des 842 cas équins de virus du Nil occidental (VNO) notifiés à l'Agence canadienne d'inspection des aliments (ACIA) de 2003 à 2019. Les caractéristiques des cas notifiés de 2015 à 2019 ont également été investiguées. La région de l'Ouest (Colombie-Britannique, Alberta, Saskatchewan, Manitoba) a enregistré un taux d'incidence plus élevé que la région de l'Est (Ontario, Québec, provinces de l'Atlantique). Une incidence particulièrement élevée du VNO a été notée en Saskatchewan. Les cas sont survenus plus tôt dans l'Ouest que dans l'Est durant la période d'étude. La majorité des cas n'étaient pas vaccinés (96 %) et ils provenaient surtout de Quarter Horses (68 %). Le risque de mortalité était de 31,9 %. Cette étude fournit des éléments clés d'information pour guider les vétérinaires praticiens dans l'application des mesures de prévention du VNO chez les chevaux au Canada.(Traduit par les auteurs).

A systematic review of risk factors associated with the introduction of Mycobacterium avium spp. paratuberculosis (MAP) into dairy herds.

The objective of this study was to systematically collect and appraise the scientific evidence related to risk factors associated with the introduction of Mycobacterium avium spp. paratuberculosis (MAP) into a herd of cattle. An electronic search was conducted to collect relevant references addressing 2 specific questions: are i) purchasing/introduction of cattle into a herd, and ii) presence of wildlife or domestic animals, risk factors for the introduction of MAP into a herd? The screening was based on titles and abstracts and selected studies were fully analyzed. Seventeen manuscripts published between 1996 and 2011 were ultimately analyzed. Unit of interest was mainly the herd (n = 17). The specific description of the risk factors studied varied between studies. The principal study design was cross-sectional (n = 15). The review indicated that purchase/introduction of animals was an important risk factor and that the importance of wildlife or other domestic species as a mechanism for transmission into a cattle herd was not measurable.

Revue systématique sur les facteurs de risque associés à l'introduction deMycobacterium aviumspp.paratuberculosis(MAP) dans les troupeaux laitiers. L'objectif était la collecte et l'évaluation systématique des preuves scientifiques liées à des facteurs de risque associés à l'introduction de Mycobacterium avium spp. paratuberculosis (MAP) dans un troupeau.Une recherche électronique a été réalisée pour trier des publications afin de répondre à 2 questions : Est-ce que i) l'achat/introduction de bovins dans un troupeau, et ii) la présence d'animaux sauvages et domestiques sont des facteurs de risque pour l'introduction de MAP dans un troupeau. La sélection a été effectuée en se basant sur les titres, les résumés, et les études choisies ont été entièrement analysés.Dix-sept manuscrits publiés entre 1996 et 2011 ont été sélectionnés. L'unité d'intérêt a principalement été le troupeau (n = 17). Les descriptions des facteurs de risque étudiés variaient d'une étude à l'autre. La majorité des études étaient de type transversal (n = 15).L'achat d'animaux est un facteur de risque bien documenté confirmant l'introduction de la paratuberculose dans le troupeau. Toutefois, malgré la présence de MAP dans les populations domestiques et sauvages à proximité du bétail, l'importance de ce facteur de risque dans la transmission à un troupeau n'était pas mesurable.(Traduit par les auteurs).

Distribution of West Nile virus cases in horses reveals different spatiotemporal patterns in eastern and western Canada.

OBJECTIVE: West Nile virus (WNV) became notifiable in horses in 2003 in Canada and has been reported every year since. The objective of this study was to describe the spatiotemporal distribution of WNV in horses between 2003 and 2020 in Canada. ANIMALS: The 848 symptomatic and laboratory-confirmed WNV cases in horses reported to the Canadian Food Inspection Agency between 2003 and 2020. METHODS: Canada was divided into eastern and western regions for analysis. For each case, location and date of notification were captured. Triennial maps were made to describe the spatiotemporal distribution and expansion of reported cases. The association between year and latitude of cases was investigated with simple linear regressions, and space-time clusters were detected with a permutation scan test. RESULTS: Most of the western region showed an extended distribution of WNV cases from 2003 to 2005 and a high recurrence of cases at the census division level. In the eastern region, the expansion of cases was gradual, with new infected census divisions mostly contiguous to previous ones. There was no association between year and latitude of cases. Six spatiotemporal clusters were detected. CLINICAL RELEVANCE: This study confirmed the endemicity of WNV in parts of both regions with local peaks in risk varying in time. Prevention and control efforts should focus on previously infected areas based on the spatiotemporal regional distribution patterns. Incursions of WNV to new areas should also be anticipated. These findings could also contribute to enhancing monitoring and prevention of WNV infections in an integrated surveillance system.

A new methodology to extrapolate disease freedom to an area using surveillance results from selected aquatic populations.

According to Chapter 1.4 of the World Organisation for Animal Health (WOAH) Aquatic Animal Health Code, an entire country or zone can be classified as free of a disease only if there is compelling evidence that all susceptible populations within the country or zone are free. However, the methods for achieving freedom are not prescribed in the WOAH standards and guidelines. Within this context, this paper describes a novel methodology to determine if surveillance results can be extrapolated from a study population to a target population. A framework of six criteria was developed to standardize a method for extrapolating surveillance results to other susceptible populations that have not been sampled. Criteria 1 assesses the internal validity for the freedom claim on the source population. Criteria 2 assesses which other susceptible populations have a non-negligible probability of exposure. Criteria 3 assesses whether the risk of infection upon exposure of the source population is the same or greater than each of the other susceptible populations. Finally, Criteria 4, 5 and 6 assess if the other susceptible populations would transmit the infection to the source population or if they have the same exposure pathways as the source population. We illustrate the use of this novel methodology using two hypothetical case scenarios. The presented methodology has the advantage of being applicable either retrospectively or prospectively. When applied retrospectively, it can be used to assess if the surveillance results of the source population can be extrapolated to the target population. When applied prospectively it can be used to design a more efficient surveillance system by selecting source populations from which it is easier to extrapolate surveillance results to the rest of the target population. Conclusions drawn using this methodology depend on the validity of the assumptions made when working through the methodology. We therefore recommend cautious application of the criteria and thorough review of all assumptions.

Serological status of Canadian cattle for brucellosis, anaplasmosis, and bluetongue in 2007-2008.

A national bovine serological survey was conducted to confirm that the prevalence of brucellosis, bluetongue, and anaplasmosis does not exceed 0.02% (95% confidence) in live cattle in Canada. Sampling consisted of a systematic random sample of 15 482 adult cattle slaughtered in federally inspected abattoirs, stratified by province. Samples were tested to detect antibodies for brucellosis, bluetongue, and anaplasmosis. All samples were negative for brucellosis. Three samples were seroreactors to bluetongue, 2 of which originated from the Okanagan Valley in British Columbia and 1 from Ontario, which after follow-up, was considered an atypical result. A total of 244 samples were seroreactors to Anaplasma and follow-up identified infection in Saskatchewan, Manitoba, and Quebec. In conclusion, the Canadian cattle population remains free of brucellosis and free of bluetongue outside the Okanagan Valley. Canada is no longer free of anaplasmosis and will be unable to claim freedom until eradication measures are completed.

RésuméStatut sérologique des bovins canadiens à l'égard de la brucellose, l'anaplasmose et la fièvre catarrhale du mouton en 2007­2008. L'enquête sérologique sur les bovins a été menée à l'échelle nationale afin de confirmer que la brucellose, la fièvre catarrhale du mouton et l'anaplasmose demeurent à une prévalence inférieure à 0,02 % (intervalle de confiance de 95 %) dans le cheptel bovin canadien. Un échantillonnage systématique de 15 482 bovins adultes a été effectué dans les abattoirs sous inspection fédérale, en stratifiant par province. Tous les échantillons se sont avérés négatifs en sérologie pour la brucellose. Une réaction sérologique a été identifiée pour la fièvre catarrhale du mouton chez trois bovins, dont deux provenaient de la vallée de l'Okanagan en Colombie-Britanique. L'autre réacteur provenait d'une ferme d'Ontario, où, après investigation, les résultats ont été considérés atypiques. Une réaction sérologique à l'anaplasmose a été détectée dans 244 échantillons. Les investigations ont permis d'identifier des fermes infectées en Saskatchewan, au Manitoba et au Québec. Le cheptel bovin canadien demeure donc indemne de la brucellose, et de la fièvre catarrhale du mouton à l'exclusion des bovins la vallée de l'Okanagan en Colombie-Britannique. Le Canada n'est plus considéré comme étant indemne de l'anaplasmose et ne pourra réclamer ce statut tant que l'éradication ne sera pas terminée.(Traduit par les auteurs).

An overview of the National West Nile Virus Surveillance System in Canada: A One Health approach.

National West Nile virus (WNV) surveillance was established in partnership with the federal, provincial and territorial governments starting in 2000, with the aim to monitor the emergence and subsequent spread of WNV disease in Canada. As the disease emerged, national WNV surveillance continued to focus on early detection of WNV disease outbreaks in different parts of the country. In Canada, the WNV transmission season occurs from May to November. During the season, the system adopts a One Health approach to collect, integrate, analyze and disseminate national surveillance data on human, mosquito, bird and other animal cases. Weekly and annual reports are available to the public, provincial/territorial health authorities, and other federal partners to provide an ongoing national overview of WNV infections in Canada. While national surveillance allows a jurisdiction-by-jurisdiction comparison of data, it also helps to guide appropriate disease prevention strategies such as education and awareness campaigns at the national level. This paper aims to describe both the establishment and the current structure of national WNV surveillance in Canada.

Development of Reporting Guidelines for Animal Health Surveillance-AHSURED.

With the current trend in animal health surveillance toward risk-based designs and a gradual transition to output-based standards, greater flexibility in surveillance design is both required and allowed. However, the increase in flexibility requires more transparency regarding surveillance, its activities, design and implementation. Such transparency allows stakeholders, trade partners, decision-makers and risk assessors to accurately interpret the validity of the surveillance outcomes. This paper presents the first version of the Animal Health Surveillance Reporting Guidelines (AHSURED) and the process by which they have been developed. The goal of AHSURED was to produce a set of reporting guidelines that supports communication of surveillance activities in the form of narrative descriptions. Reporting guidelines come from the field of evidence-based medicine and their aim is to improve consistency and quality of information reported in scientific journals. They usually consist of a checklist of items to be reported, a description/definition of each item, and an explanation and elaboration document. Examples of well-reported items are frequently provided. Additionally, it is common to make available a website where the guidelines are documented and maintained. This first version of the AHSURED guidelines consists of a checklist of 40 items organized in 11 sections (i.e., surveillance system building blocks), which is available as a wiki at https://github.com/SVA-SE/AHSURED/wiki. The choice of a wiki format will allow for further inputs from surveillance experts who were not involved in the earlier stages of development. This will promote an up-to-date refined guideline document.

Evaluation of the DG29 test for early detection of pregnancy in cattle.

The objective of this study was to evaluate a commercial blood test (DG29) for pregnancy in cattle. Compared with ultrasound, the sensitivity of the assay for detecting pregnancy around day 30 post-insemination was 99.4% [95% confidence interval (CI): 96.1-100]. The specificity was 100% (95% CI: 84.7-100) in non-inseminated cattle, and 66.7%; (95% CI: 49.7-80.4) in inseminated nonpregnant cattle. Positive and negative predictive values were 92.6% and 96.3%, respectively, in a sample of inseminated cattle in which 80% were pregnant.

Estimating diagnostic accuracy of fecal culture in liquid media for the detection of Mycobacterium avium subsp. paratuberculosis infections in Québec dairy cows: A latent class model.

A latent class model fit within a Bayesian framework was used to estimate the sensitivity and specificity of individual fecal culture (IFC) in liquid medium (Para TB culture liquid medium and BACTEC MGIT 960 system) for the detection of Mycobacterium avium subsp. paratuberculosis (MAP) infections in Québec dairy cows. As a secondary objective, the within-herd paratuberculosis prevalence was estimated. A dataset including 21 commercial Québec dairy herds participating in previous research projects was retrospectively analyzed. In total, 1386 adult cows on which both IFC and serum-ELISA were available were included. The selected latent class model assumed conditional dependence between the tests. Non-informative priors for IFC accuracy and paratuberculosis prevalence were used while informative priors, obtained from the literature, were used for serum-ELISA accuracy. The WinBUGS statistical freeware was used to obtain posterior estimates (medians and 95% Bayesian credibility intervals (95% BCI)) for each parameter. The sensitivity and specificity estimates for IFC were 34.4% (95% BCI: 20.3-66.1) and 99.5% (95% BCI: 98.6-100), respectively. Sensitivity and specificity for serum-ELISA were 27.3% (95% BCI: 18.1-38.3) and 97.4% (95% BCI: 96.6-98.0). Median paratuberculosis within herd prevalence was estimated to be 0.3% (0-3.3). In conclusion, a higher sensitivity of IFC compared to serum-ELISA was observed both in the unconditional and conditional dependent models. Since the sensitivity of both IFC and serum-ELISA was relatively low, conditional dependence between the tests is more likely in the true disease positive animals. We hypothesize that conditional dependence arises because an unmeasured covariate influences the performance of both tests among disease positive animals causing both tests to incorrectly misclassify the animal as negative. One limitation of this study was the very low within herd prevalence of the participant herds.

Risk factors associated with Mycobacterium avium subsp. paratuberculosis herd status in Québec dairy herds.

Paratuberculosis is a chronic and contagious enteric disease of ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). Control of paratuberculosis is justified given the associated economic losses and the potential role of MAP in Crohn's disease in humans. Management practices that limit exposure of susceptible animals to MAP are more effective at reducing disease prevalence than testing and culling infected cows. The objective of this retrospective case-control study was to study the association between management practices and MAP status in dairy herds in Québec, Canada. A total of 26 case herds (MAP had been isolated from at least 1 environmental sample in each herd) and 91 control herds (no clinical cases of paratuberculosis and negative on 2 consecutive yearly environmental samplings) were selected among herds enrolled in the Québec Voluntary Paratuberculosis Control Program. A risk assessment questionnaire, completed at enrolment, was available for the selected herds. Culture of MAP was achieved using liquid media and the BACTEC 960 detection system. Multivariable logistic regression was used to evaluate the association between selected risk factors and MAP herd status. Herd size (OR = 1.17; 95% CI: 1.02-1.33) and proportion of cows purchased per year in the last 5 years (OR = 5.44; 95% CI: 1.23-23.98) were significantly associated with a positive MAP herd status. The management risk factors identified in the present study are in accord with previous studies. Management practices aiming to prevent the introduction of new animals into the herd and to reduce the contact of newborn calves with adult animals or their feces are key elements to minimize MAP introduction and transmission into a herd. These elements should be prioritized in control programs.

Evaluation of a PCR assay on overgrown individual fecal samples cultured for Mycobacterium avium subsp. paratuberculosis.

Microbial overgrowth can interfere with Mycobacterium avium subsp. paratuberculosis (MAP) growth and detection. We estimated the percentage of positive samples by PCR performed on the incubated media of individual fecal samples classified as non-interpretable (NI) by bacteriologic culture of liquid media. A total of 262 liquid cultures declared NI and 88 samples declared negative were included in the study. MAP DNA was detected in 7 NI samples (2.7%; 95% CI: 1.1-5.4%) and in 1 negative sample (1.1%; 95% CI: 0.3-6.2%). The PCR allowed the detection of MAP-positive samples that had been missed in the initial bacteriologic culture. However, the benefit of these few additional positive results must be weighed against the additional costs incurred. Using PCR to classify overgrown cultures optimizes the detection process and eliminates the NI outcome.

Detection of Mycobacterium avium subspecies paratuberculosis in tie-stall dairy herds using a standardized environmental sampling technique and targeted pooled samples.

Mycobacterium avium ssp. paratuberculosis (MAP) is the etiologic agent of Johne's disease, a chronic contagious enteritis of ruminants that causes major economic losses. Several studies, most involving large free-stall herds, have found environmental sampling to be a suitable method for detecting MAP-infected herds. In eastern Canada, where small tie-stall herds are predominant, certain conditions and management practices may influence the survival and transmission of MAP and recovery (isolation). Our objective was to estimate the performance of a standardized environmental and targeted pooled sampling technique for the detection of MAP-infected tie-stall dairy herds. Twenty-four farms (19 MAP-infected and 5 non-infected) were enrolled, but only 20 were visited twice in the same year, to collect 7 environmental samples and 2 pooled samples (sick cows and cows with poor body condition). Concurrent individual sampling of all adult cows in the herds was also carried out. Isolation of MAP was achieved using the MGIT Para TB culture media and the BACTEC 960 detection system. Overall, MAP was isolated in 7% of the environmental cultures. The sensitivity of the environmental culture was 44% [95% confidence interval (CI): 20% to 70%] when combining results from 2 different herd visits and 32% (95% CI: 13% to 57%) when results from only 1 random herd visit were used. The best sampling strategy was to combine samples from the manure pit, gutter, sick cows, and cows with poor body condition. The standardized environmental sampling technique and the targeted pooled samples presented in this study is an alternative sampling strategy to costly individual cultures for detecting MAP-infected tie-stall dairies. Repeated samplings may improve the detection of MAP-infected herds.

Mycobacterium avium ssp. paratuberculosis (MAP) est l'agent étiologique de la maladie de Johne, une entérite chronique contagieuse des ruminants et responsable d'importantes pertes économiques. Plusieurs études, la plupart réalisées dans des grands troupeaux en stabulation libre, ont démontré que la technique de culture de prélèvements de l'environnement est appropriée pour la détection des troupeaux infectés par MAP. Dans l'est du Canada où prédominent les petits troupeaux en stabulation entravée, certaines conditions et pratiques de régie pourraient avoir un impact sur la survie, la transmission et l'isolement de MAP. Notre objectif était d'estimer la performance d'une technique standardisée de culture de prélèvements de l'environnement combinée à des échantillons groupés ciblés pour la détection des troupeaux laitiers en stabulation entravée infectés par MAP. Vingt-quatre troupeaux (19 infectés et 5 non infectés) ont été enrôlés, mais seulement 20 troupeaux ont été visités 2 fois dans la même année pour y prélever 7 échantillons de l'environnement et 2 échantillons groupés (vaches malades et vaches maigres). Des échantillons individuels de toutes les vaches dans le troupeau ont été également prélevés. L'isolement de MAP a été réalisé en utilisant le milieu de culture MGIT ParaTB et le système de détection BACTEC 960. Globalement, MAP a été isolée dans 7 % des cultures de l'environnement. La sensibilité de la technique était de 44 % (IC 95 % : 20 % à 70 %) en combinant le résultat des 2 visites et de 32 % (IC 95 % : 13 % à 57 %) en utilisant aléatoirement le résultat d'une seule visite. La meilleure stratégie d'échantillonnage était la combinaison des échantillons de la fosse, de l'écureur, du groupe de vaches malades et du groupe de vaches maigres. La technique standardisée de prélèvements de l'environnement combinée aux échantillons groupés ciblés présentée dans cette étude est une alternative économique à la culture individuelle pour détecter des troupeaux laitiers infectés par MAP. La répétition des prélèvements pourrait contribuer à améliorer la détection des troupeaux infectés par MAP.(Traduit par les auteurs).

Evaluation of a PCR assay on overgrown environmental samples cultured for Mycobacterium avium subsp. paratuberculosis.

Culture of Mycobacterium avium subsp. paratuberculosis (MAP) is the definitive antemortem test method for paratuberculosis. Microbial overgrowth is a challenge for MAP culture, as it complicates, delays, and increases the cost of the process. Additionally, herd status determination is impeded when noninterpretable (NI) results are obtained. The performance of PCR is comparable to fecal culture, thus it may be a complementary detection tool to classify NI samples. Our study aimed to determine if MAP DNA can be identified by PCR performed on NI environmental samples and to evaluate the performance of PCR before and after the culture of these samples in liquid media. A total of 154 environmental samples (62 NI, 62 negative, and 30 positive) were analyzed by PCR before being incubated in an automated system. Growth was confirmed by acid-fast bacilli stain and then the same PCR method was again applied on incubated samples, regardless of culture and stain results. Change in MAP DNA after incubation was assessed by converting the PCR quantification cycle (Cq) values into fold change using the 2-ΔCq method (ΔCq = Cq after culture - Cq before culture). A total of 1.6% (standard error [SE] = 1.6) of the NI environmental samples had detectable MAP DNA. The PCR had a significantly better performance when applied after culture than before culture (p = 0.004). After culture, a 66-fold change (SE = 17.1) in MAP DNA was observed on average. Performing a PCR on NI samples improves MAP culturing. The PCR method used in our study is a reliable and consistent method to classify NI environmental samples.

Gastric ulcers in standardbred racehorses: prevalence, lesion description, and risk factors.

This study was performed to estimate the prevalence of gastric ulcers in Standardbred racehorses, to describe the lesion score and location, and to identify potential risk factors. Two hundred seventy-five (275) Standardbred horses from 5 training centers and 2 racetracks in Quebec, Canada, were studied. Historical data for the 2 months before examination were recorded for each horse, and the presence of gastric ulcers was determined by gastroscopy. A previously reported scoring system that used grades 0-3 for gastric lesions was used. Overall, 121 horses (44.0%; 95% CI, 38.1-50.1%) had gastric ulcers. The prevalence of gastric ulcers was significantly higher (P < .0001) in actively racing horses (63.3%; 95% CI, 54.7-71.2%) than in horses at rest. Multivariate analysis defined that horses in racing (OR = 9.29; 95% CI, 3.55-24.3) were significantly more likely to have gastric ulcers than horses at rest and that trotters (OR = 2.23; 95% CI, 1.28-3.86) were more likely to have gastric ulcers than pacers. The number of lesion sites (P < .0001) and poor body condition (P < .0001) were significantly associated with lesion scores. Gastric ulcers are highly prevalent in Standardbred racehorses. Furthermore, actively racing horses and trotters are more likely to have gastric ulcers. Also, poor body condition in Standardbred racehorses may be an indication that gastric ulcers are present and that lesion scores are high. The cause-and-effect relationship between poor body condition and the presence of gastric ulcers is unclear.

Comparison of commercial enzyme-linked immunosorbent assays and agar gel immunodiffusion tests for the serodiagnosis of equine infectious anemia.

The purpose of this study was to estimate the performance characteristics (accuracy, detection limit, and precision) of commercially available enzyme-linked immunosorbent assay (ELISA) and agar gel immunodiffusion (AGID) kits in comparison with a reference AGID kit for the detection of equine infectious anemia (EIA) antibodies in horses for regulatory use in Canada. A total of 285 positive and 315 negative samples by the reference AGID were tested blindly on 2 other AGID and 4 ELISA kits. Commercially available AGID kits for the serodiagnosis of EIA were found equivalent. The 3 ELISAs directed against antibodies to the p26 core protein also performed relatively well in comparison with the reference AGID, with excellent relative accuracy and acceptable precision. The single ELISA directed against antibodies to the gp45 trans-membrane viral protein yielded a lower relative sensitivity. The performance characteristics of the ELISAs directed against antibodies to p26 are, therefore, adequate to support the implementation of ELISA for regulatory purposes in Canada.

Bacterial contamination of colostrum fed to newborn calves in Québec dairy herds.

A convenience sample of 234 colostral specimens, collected directly from the nursing bottle immediately prior to the first feeding, was studied. Samples originated from 6 farms and were collected over 24 months. Routine bacteriologic techniques were used to quantify the bacterial load of the colostrum, as well as to identify the bacteria. Overall, at least 1 microorganism was cultured from 221 colostral samples (94.4%). By using the upper tolerance level of 100,000 bacteria/mL, 84 samples (35.9%) were considered contaminated. Staphylococcus spp. (57.7%), gram-negative rods (47.9%), coliforms (44.0%), and Streptococcus uberis (20.5%) were among the most frequently isolated bacteria. The relative risk (RR) of contamination with more than 100,000 bacteria/mL was significantly greater in warm months [RR = 2.55, 95% confidence interval (CI): 1.63 to 4.02] than in cool months and in colostrum offered to male calves (RR = 1.55, 95% CI: 1.09 to 2.20). Bacterial load was also associated with the farm of origin (P < 0.0001). When assessing colostrum management, one should consider bacterial contamination. Multiple factors are likely associated with the degree of contamination, and farm-specific factors may be important. Further studies are necessary to evaluate the impact of bacterial contamination of colostrum on neonatal health.

Estimation of the population size of Canadian commercial poultry farms by log-linear capture-recapture analysis.

The objective of this study was to estimate the population size of Canadian poultry farms in 3 subpopulations (British Columbia, Ontario, and Other) by poultry category. We used data for 2008 to 2011 from the Canadian Notifiable Avian Influenza (NAI) Surveillance System (CanNAISS). Log-linear capture-recapture models were applied to estimate the number of commercial chicken and turkey farms. The estimated size of farm populations was validated by comparing sizes to data provided by the Canadian poultry industry in 2007, which were assumed to be complete and exhaustive. Our results showed that the log-linear modelling approach was an appropriate tool to estimate the population size of Canadian commercial chicken and turkey farms. The 2007 farm population size for each poultry category was included in the 95% confidence intervals of the farm population size estimates. Log-linear capture-recapture modelling might be useful for estimating the number of farms using surveillance data when no comprehensive registry exists.

L'objectif de cette étude était d'estimer le nombre de ferme de volaille au Canada dans trois sous-populations (Colombie-Britannique, Ontario et Autre) par catégorie de volaille. Nous avons utilisé des données du Système canadien de surveillance de l'influenza aviaire à déclaration obligatoire (SCSIADO) de 2008 à 2011. Nous avons utilisé des modèles log-linéaires pour estimer le nombre de fermes commerciales de poulets et de dindons. Nous avons validé les tailles des populations de fermes en les comparants aux données de 2007 fournies par l'industrie canadienne de la volaille (prétendues complètes et exhaustives). Nos résultats ont démontré que l'approche de modélisation log-linéaire était un outil approprié pour estimer les tailles des populations de fermes de poulets et dindons au Canada. Pour chaque catégorie de volaille, la taille de la population de fermes de 2007 était incluse dans l'intervalle de confiance des tailles estimées des populations de fermes avec un niveau de confiance de 95 %. La modélisation log-linéaire de type capture-recapture pourrait être utile pour estimer le nombre de fermes en utilisant des données de surveillance en particulier lorsqu'il n'existe aucun registre exhaustif.(Traduit par les auteurs).