ABSTRACT
BACKGROUND Leprosy, caused by Mycobacterium leprae, is a public health problem in Brazil that affects peripheral nerves, resulting in physical disabilities. During host-pathogen interactions, the immune response determines leprosy outcomes from a localised (paucibacillary) form to a disseminated (multibacillary) form. The recognition of M. leprae involves the DC-SIGN receptor, which is present on the dendritic cells (DCs) and participates in immune activation. OBJECTIVES To evaluate the association of polymorphisms in the promoter region of the gene encoding DC-SIGN (CD209) and the clinical form of leprosy, and to investigate its functional effects. METHODS The study population included 406 leprosy patients from an endemic area in Brazil [310 multibacillary (MB); 96 paucibacillary (PB)]. A functional evaluation based on the effects of the single nucleotide variant (SNV) associated with PB leprosy on the specific immune response was also performed. RESULTS The GA genotype and the presence of the A allele of rs735240 (-939G>A) were associated with PB leprosy [OR: 2.09 (1.18-3.69) and 1.84 (1.07-3.14), respectively]. Carriers of the A allele showed reduced expression of CD209 and TGF-β1 in leprosy lesions in comparison with individuals with GG genotype, in addition to a higher response to the Mitsuda test. CONCLUSION These data suggest that rs735240 influences the immune response against M. leprae and clinical presentation of leprosy.
ABSTRACT
Os polimorfismos denominados Indels são variações de comprimento geradas por inserção ou deleção de um ou mais nucleotídeos em uma sequência de DNA. Estes marcadores genéticos vêm apresentando um grande potencial para fins forenses e populacionais por combinar características dos marcadores SNPs, tais como a capacidade de analisar fragmentos curtos (menores que 250pb) e baixas taxas de mutação, com a facilidade da genotipagem dos STR em uma única PCR, seguida de detecção dos fragmentos amplificados por eletroforese. Com o objetivo de avaliar a eficiência dos Indels em aplicações forenses e esclarecer os detalhes da formação de diferentes populações brasileiras através de dados genéticos, amostras populacionais de diferentes estados brasileiros foram genotipadas através de dois sistemas multiplex. O primeiro (indelplex-HID) foi otimizado para fins de Identificação Humana (HID) e inclui um grupo de 38 marcadores Indels selecionados por apresentarem altos valores de diversidade genética dentro das principais populações continentais. Já o segundo (46-AI-indels), foi selecionado para estudos de ancestralidade e é composto por um conjunto de 46 marcadores informativos de ancestralidade (AIMs). Nesse último caso, ao contrário do anterior, o sistema multiplex inclui marcadores com alta divergência nas frequências alélicas entre populações continentais. Na primeira etapa, o multiplex HID foi aplicado em uma amostra populacional do Rio de Janeiro e em uma amostra populacional dos índios Terena...
Indels are length polymorphisms created by the insertion or deletion of one or more nucleotides in a DNA sequence. This type of genetic marker is potentially very useful for forensic and population genetic applications because it combines some desirable SNP features, such as the possibility of being analyzed in small fragments (less than 250bp), and low mutation rate, and in the same way as for the STRs it is easily genotyped in a single PCR followed by capillary electrophoresis detection of the amplified fragments. In order to evaluate the efficiency of Indels in forensic applications, and clarify some details on the formation of different Brazilian populations through genetic data, population samples from different Brazilian States were genotyped through two Indel multiplex systems. The first (Indelplex-HID) has been optimized for Human Identification (HID), and includes a group of 38 Indel markers selected by presenting similarly high values of genetic diversity within the main continental populations. The second (46-AI-indels) was selected for studies of ancestry, and it is composed by a set of 46 ancestry informative markers (AIMs). The latter, unlike the first one, includes markers with high divergence in allele frequencies among populations. In a first stage, the multiplex HID was used to study a population sample of Rio de Janeiro and a population sample of Terena Amerindians...