Petroleum contamination and bioaugmentation in bacterial rhizosphere communities from Avicennia schaueriana

ABSTRACT Anthropogenic activity, such as accidental oil spills, are typical sources of urban mangrove pollution that may affect mangrove bacterial communities as well as their mobile genetic elements. To evaluate remediation strategies, we followed over the time the effects of a petroleum hydrocarbon degrading consortium inoculated on mangrove tree Avicennia schaueriana against artificial petroleum contamination in a phytoremediation greenhouse experiment. Interestingly, despite plant protection due to the inoculation, denaturing gradient gel electrophoresis of the bacterial 16S rRNA gene fragments amplified from the total community DNA indicated that the different treatments did not significantly affect the bacterial community composition. However, while the bacterial community was rather stable, pronounced shifts were observed in the abundance of bacteria carrying plasmids. A PCR-Southern blot hybridization analysis indicated an increase in the abundance of IncP-9 catabolic plasmids. Denaturing gradient gel electrophoresis of naphthalene dioxygenase (ndo) genes amplified from cDNA (RNA) indicated the dominance of a specific ndo gene in the inoculated petroleum amendment treatment. The petroleum hydrocarbon degrading consortium characterization indicated the prevalence of bacteria assigned to Pseudomonas spp., Comamonas spp. and Ochrobactrum spp. IncP-9 plasmids were detected for the first time in Comamonas sp. and Ochrobactrum spp., which is a novelty of this study.

Diversity and seasonal fluctuation of predominant microbial communities in Bhitarkanika, a tropical mangrove ecosystem in India

Different groups of microorganisms are present in mangrove areas, and they perform complex interactions for nutrient and ecological balances. Since little is known about microbial populations in mangroves, this study analyzed the microbial community structure and function in relation to soil physico-chemical properties in Bhitarkanika, a tropical mangrove ecosystem in India. Spatial and seasonal fluctuations of thirteen important groups of microorganisms were evaluated from the mangrove forest sediments during different seasons, along with soil physico-chemical parameters. The overall microbial load (x10(5)cfu/g soil) in soil declined in the order of heterotrophic, free living N2 fixing, Gram-negative nitrifying, sulphur oxidizing, Gram-positive, spore forming, denitrifying, anaerobic, phosphate solubilizing, cellulose degrading bacteria, fungi and actinomycetes. Populations of the heterotrophic, phosphate solubilizing, sulphur oxidizing bacteria and fungi were more represented in the rainy season, while, Gram-negative, Gram-positive, nitrifying, denitrifying, cellulose decomposing bacteria and actinomycetes in the winter season. The pool size of most of other microbes either declined or maintained throughout the season. Soil nutrients such as N, P, K (Kg/ha) and total C (%) contents were higher in the rainy season and they did not follow any common trend of changes throughout the study period. Soil pH and salinity (mS/cm) varied from 6-8 and 6.4-19.5, respectively, and they normally affected the microbial population dynamics. Determination of bacterial diversity in Bhitarkanika mangrove soil by culture method showed the predominance of bacterial genera such as Bacillus, Pseudomonas, Desulfotomaculum, Desulfovibrio, Desulfomonas, Methylococcus, Vibrio, Micrococcus, Klebsiella and Azotobacter. Principal component analysis (PCA) revealed a correlation among local environmental variables with the sampling locations on the microbial community in the mangrove soil. Rev. Biol. Trop. 60 (2): 909-924. Epub 2012 June 01.

En las zonas de manglares están presentes diferentes grupos de microorganismos, los cuales presentan complejas interacciones que afectan los balances ecológicos y de nutrientes. Debido a que se sabe poco sobre las poblaciones microbianas en los manglares, este estudio analiza la estructura y función de la comunidad microbiana según las propiedades físico-químicas del suelo en Bhitarkanika, un ecosistema de manglares tropicales en la India. Se evaluaron las fluctuaciones espaciales y temporales de 13 grupos de microorganismos importantes en el sedimento de los manglares durante diferentes temporadas y parámetros físico-químicos del suelo. La carga microbiana total (x10(5)cfu/g de suelo) en el suelo se redujo en la categoría de las heterotróficas, de las bacterias libres fijadoras de N2, Gram-negativas nitrificantes, oxidativas de azufre, Gram-positivas, formadoras de esporas, desnitrificantes, anaeróbicas, las solubilizadoras de fosfato, bacterias degradadoras de celulosa, hongos y actinomicetos. Las poblaciones de heterótrofos, solubilizadoras de fosfato, oxidativas de azufre y los hongos estuvieron más representadas en la temporada lluviosa, mientras que, las Gram-negativas y Gram-positivas, nitrificantes, desnitrificantes, descomponedoras de celulosa y los actinomicetos, en la temporada de invierno. El tamaño poblacional de otros microorganismos disminuyó o se mantuvo durante toda la temporada. Los nutrientes del suelo, tales como N, P, K (Kg/ha) y el contenido total de C (%) fueron mayores en la temporada de lluvias, y no siguieron ninguna tendencia común de cambio a través del período de estudio. El pH del suelo y la salinidad (mS/cm) variaron de 6-8 y 6.4-19.5, respectivamente, lo que afectó significativamente la dinámica de la población microbiana. La determinación de la diversidad de bacterias en el suelo del manglar Bhitarkanika por el método de cultivo mostró el predominio de los géneros de bacterias como Bacillus, Pseudomonas, Desulfotomaculum, Desulfovibrio, Desulfomonas, Methylococcus, Vibrio, Micrococcus, Klebsiella y Azotobacter. El análisis de componentes principales (ACP) reveló una correlación entre las variables locales del ambiente y los sitios de muestreo en la comunidad microbiana en el suelo del manglar.

Microbial flora associated with submerged mangrove leaf litter in India

We studied the microbial flora in decomposing mangrove leaves in relation to changes in nitrogen and tannin levels, and in penaeid prawn assemblages. Senescent leaves of two mangrove species (Rhizophora apiculata and Avicennia marina) kept in nylon bags, were separately immersed for 80 days in five tanks full of mangrove water. A known amount of decomposing leaves was collected every ten days from each tank for microorganism counts, total nitrogen and tannin measurement, and juvenile penaeid prawn counts. Five genera of total heterotrophic bacteria (THB), three species of azotobacters and 19 species of fungi were identified. The azotobacters showed a significant peak around 40-50 days after the beginning of of decomposition, similar to the trend for total nitrogen and for prawn assemblages. Rev. Biol. Trop. 55 (2): 393-400. Epub 2007 June, 29.

Se estudió la flora microbiana en hojas en descomposición de mangles, considerando nitrógeno, taninos y camarones peneidos jóvenes. Colocamos hojas viejas de dos especies de mangle (Rhizophora apiculata y Avicennia marina) en bolsas de nylon y las sumergimos en agua de manglar durante 80 días usando cinco tanques separados. Cada diez días extrajimos una cantidad conocida de hojas en descomposición de cada tanque. Hallamos cinco géneros de bacterias heterotróficas totales (THB), tres especies de azotobacterias y 19 especies de hongos. Las azotobacterias presentaron un pico significativo de abundancia alrededor de los 40-50 días de descomposición, un patrón similar a los del nitrógeno total y los camarones.

Effect of heavy metals (Hg and Zn) on the growth and phosphate solubilising activity in halophilic phosphobacteria isolated from Manakudi mangrove.

The diversity of phosphobacteria in Manakudi mangrove ecosystem of Tamil Nadu was carried out in root and rhizosphere soil samples. The counts of phosphobacteria were found higher in root samples than in soil samples particularly in Hymenachene acutigluma. The abundance of phosphobacterial diversity in Manakudi mangrove showed high degree of positive correlation with the content of phosphate in rhizosphere soil of all the mangrove and associated plant species. Nine phosphobacterial species belonging to 7 genera were reported from Manakudi mangrove ecosystem. All the identified bacterial species are sensitive to both the heavy metals (mercury and zinc) in terms of growth and physiology even at lower concentrations. The content of protein and total sugars were increased by the higher concentrations of heavy metals whereas decreased trend was noticed in lower concentrations of heavy metals.