ABSTRACT
Galli Gigerii Endothelium Corneum(GGEC), the dried gizzard membrane of Gallus gallus domesticus is a Chinese medicinal material commonly used for digestion. However, due to the particularity of texture and composition, its active ingre-dients have not been clarified so far, and there is also a lack of quality evaluation indicators. In this study, UPLC-Q-TOF-MS was used to analyze the chemical components from the water extract of GGEC, and ten nucleosides were identified for the first time. HPLC fingerprints of the water extracts of GGEC were established and the content of seven nucleosides was determined. The fingerprint similarities of 40 batches of GGEC samples ranged from 0.765 to 0.959, indicating that there were great differences among the GGEC products processed with different methods. In addition, SPSS 22.0 and SIMCA 14.1 were used for hierarchical cluster analysis(HCA) and principal component analysis(PCA) on the 19 common peaks of the HPLC fingerprints of GGEC, and the 40 batches of samples were divided into three categories: raw GGEC, fried GGEC and vinegar-processed GGEC. Eight differential components in GGEC were marked by orthogonal partial least squares discrimination analysis(OPLS-DA), two of which were adenine and thymine. The results of content determination showed that the total content of the seven nucleosides in raw GGEC, fried GGEC and vinegar-processed GGEC were 182.5-416.8, 205.3-368.7, and 194.2-283.0 μg·g~(-1), respectively. There were significant differences in the content of hypoxanthine, thymine and thymidine among the GGEC products processed with different methods(P<0.05), which were graded in the order of fried GGEC>vinegar-processed GGEC>raw GGEC. This suggested that the content of hypoxanthine, thymine and thymidine tended to increase during the frying process, and the variation range might be related to the degree of heat exposure. The established methods in this study were simple and reproducible, and could be used for qualitative and quantitative analysis of GGEC and its processed pro-ducts. This study also provided reference for the establishment of quality standards of GGEC with chemical components as control index.
Subject(s)
Nucleosides , Drugs, Chinese Herbal/chemistry , Chromatography, High Pressure Liquid , Acetic Acid , Thymine , Thymidine , Water , HypoxanthinesABSTRACT
<p><b>OBJECTIVE</b>To establish a rapid and convenient method of DNA modification by bisulfite sodium for the detection of DNA methylation.</p><p><b>METHODS</b>Through increasing the bisulfite sodium concentration and the temperature of treatment, cutting down the modification time, besides using glassmilk to adsorb the DNA in the purification and recovery, to improve the methods of DNA modification. Efficiency of cytosine converted to thymine in MAGE-A3 gene and DAP-K gene fragments were analyzed by bisulfite sequencing PCR in order to evaluate the DNA modification effect among the improved method, traditional method and kit method.</p><p><b>RESULTS</b>The operating time of test was shortened to about 3 hours by the improved method; conversion rate of unmethylated cytosine to thymine was over 99%; compared with the traditional method and kit method, there was no significant difference (χ(2) = 0.0564, P > 0.05); the improved method was only for the unmethylated cytosine conversion modification, and there was no significant difference in process of methylated cytosine converted to thymine comparing with the traditional method (χ(2) = 0.0149, P > 0.05).</p><p><b>CONCLUSION</b>The improved method has high efficiency of DNA modification and has no significant effect on excessive modification;meanwhile, it has many advantages such as time-saving and easy to operate etc.</p>
Subject(s)
Cytosine , Chemistry , DNA , Chemistry , DNA Methylation , Polymerase Chain Reaction , Sulfites , Chemistry , Thymine , ChemistryABSTRACT
BACKGROUND: Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a single-gene disorder caused by mutations in the NOTCH3 gene, located on chromosome 19p13. NOTCH3 encodes a transmembrane receptor which plays a role in cellular differentiation and cell cycle regulation. CASE REPORT: A 71-year-old female showing headache and memory impairment, familial history of stroke and having a missense mutation from proline to serine at codon 167 in the exon 4 on NOTCH3 gene. Five family members revealed the same mutation (c.499C>T), who presented migrainous headache and stroke. In this study, we have uncovered a novel NOTCH3 mutation at the nucleotide position 499 (c.499C>T; p.P167S) in a family with CADASIL. CONCLUSIONS: We suggested a missense mutation of proline to serine at codon 167 in exon 4 of the NOTCH3 gene, which resulted in the substitution of cytosine to thymine (c.499C>T) resulting migraine, stroke and vascular cognitive impairment.
Subject(s)
Aged , Female , Humans , CADASIL , Cell Cycle , Codon , Cognition Disorders , Cytosine , Exons , Headache , Memory , Migraine Disorders , Mutation, Missense , Proline , Serine , Stroke , ThymineABSTRACT
OBJECTIVE: Mammography has been established as the gold standard for the detection of breast cancer, and imaging techniques such as ultrasonography, magnetic resonance imaging, scintigraphy and positron emission tomography may be useful to improve its sensitivity and specificity. The objective of this study with breast scintigraphy was to evaluate the uptake of 99mTc-thymine in mammary lesions. METHODS: A total of 45 patients were included in this study. Thirty-three patients (73%) were subjected to surgery or percutaneous biopsy, providing histopathological data. The other 12 patients who remained under surveillance received clinical examinations and biannual mammography with a normal follow-up of at least three years, the data from which were used for comparison with the scintimammography results. RESULTS: The majority of patients (64.4%) had clinically impalpable lesions with a mammogram diagnosis of microcalcifications, impalpable nodules, or focal asymmetry. Of the studied lesions, 87% were smaller or equal to 20 mm in diameter, and 22% had malignant histopathological findings. Scintigraphy with 99mTc-thymine had a sensitivity of 70%, a specificity of 85.7%, positive and negative predictive values of 58.3% and 90.9%, respectively, and an accuracy of 82.2%. CONCLUSIONS: The results of this study are consistent with those previously reported by other authors. The good specificity and high negative predictive value of this technique and the absence of uptake in the heart indicate that it may be a promising complementary method in clinical practice and that it may contribute to reducing unnecessary benign biopsies.
Subject(s)
Adult , Aged , Aged, 80 and over , Female , Humans , Middle Aged , Breast Neoplasms , Mammography/methods , Organotechnetium Compounds , Radiopharmaceuticals , Thymine/analogs & derivatives , Biopsy , Breast Neoplasms/pathology , Predictive Value of Tests , Reproducibility of Results , ThymineABSTRACT
Neurofibromatosis type 1 (NF1) is a genetic disease characterized by neoplastic and non-neoplastic disorders involving tissues of neuroectodermal and mesenchymal origin. NF1 is caused by mutations in the NF1 gene, which is found on chromosome 17q11.2. Patients with NF1 are at increased risk of developing soft tissue sarcomas that arise within the stromal compartment of the gastrointestinal tract, termed gastrointestinal stromal tumors (GISTs). GISTs associated with neurofibromatosis differ from sporadic GISTs, particularly with respect to their lower response rate to imatinib. We recently experienced a case involving a 45-year-old man with NF1 who was admitted to the hospital with epigastric pain and vomiting. Abdominal computed tomography revealed a duodenal GIST with pancreatic invasion. He had a base substitution mutation involving replacement of 2041 cytosine with thymine. He was treated successfully with a surgical operation and adjuvant imatinib therapy.
Subject(s)
Humans , Middle Aged , Benzamides , Cytosine , Gastrointestinal Stromal Tumors , Gastrointestinal Tract , Genes, Neurofibromatosis 1 , Neural Plate , Neurofibromatoses , Neurofibromatosis 1 , Piperazines , Pyrimidines , Sarcoma , Thymine , Vomiting , Imatinib MesylateABSTRACT
Neurofibromatosis type 1 (NF1) is a genetic disease characterized by neoplastic and non-neoplastic disorders involving tissues of neuroectodermal and mesenchymal origin. NF1 is caused by mutations in the NF1 gene, which is found on chromosome 17q11.2. Patients with NF1 are at increased risk of developing soft tissue sarcomas that arise within the stromal compartment of the gastrointestinal tract, termed gastrointestinal stromal tumors (GISTs). GISTs associated with neurofibromatosis differ from sporadic GISTs, particularly with respect to their lower response rate to imatinib. We recently experienced a case involving a 45-year-old man with NF1 who was admitted to the hospital with epigastric pain and vomiting. Abdominal computed tomography revealed a duodenal GIST with pancreatic invasion. He had a base substitution mutation involving replacement of 2041 cytosine with thymine. He was treated successfully with a surgical operation and adjuvant imatinib therapy.
Subject(s)
Humans , Middle Aged , Benzamides , Cytosine , Gastrointestinal Stromal Tumors , Gastrointestinal Tract , Genes, Neurofibromatosis 1 , Neural Plate , Neurofibromatoses , Neurofibromatosis 1 , Piperazines , Pyrimidines , Sarcoma , Thymine , Vomiting , Imatinib MesylateABSTRACT
Eighteen compounds were isolated by a combination of various chromatographic techniques including column chromatography over macroporous resin, MCI gel, silica gel, and sephadex LH-20 and reversed-phase HPLC. Their structures were elucidated by spectroscopic data analysis as adinoside A (1), stryspinoside (2), benzyl alcohol beta-glucopyranoside (3), benzyl 2-o-beta-D-glucopyranosyl-2,6-dihydroxybenzoate (4) , gentisic acid 2-O-beta-D-glucopyranoside (5), eugenyl beta-D-glucopyranoside (6) , eugenyl-P-xylopyranosyl-(1-->6)-beta-glucopyranoside (7), (-)-lyoniresinol 9-O-fP-D-glucopyranoside (8) , (+)-lyoniresinol 9-O-beta-D-glucopyranoside (9) , apigenin-7-O-L-rhamnopyranoside (10), luteolin-3 '-O-L-rhamnoside (11) , ursolic acid (12) , beta-sitosteryl-3beta-glucopyranoside-6'-O-palmitate (13), abscisic acid (14), guanosine (15), 5-methyluracil (16), trans-cinnamic acid (17), and 4-hydroxybenzaldehyde(18). These compounds were obtained from this plant for the first time.
Subject(s)
Benzaldehydes , Flowers , Chemistry , Gentisates , Glucosides , Hydroxybenzoates , Lonicera , Chemistry , Luteolin , Thymine , TriterpenesABSTRACT
Attenuated familial adenomatous polyposis (AFAP) is a variant of familial adenomatous polyposis with fewer than one hundred colorectal polyps and a later age of onset of the cancer. Here, we report two cases of AFAP within family members. Each patient demonstrated the same novel germ line mutation in exon 15 of the adenomatous polyposis coli (APC) gene and was successfully managed with sulindac after refusal to perform colectomy: a 23-year-old man with incidentally diagnosed gastric adenoma and fundic gland polyps underwent colonoscopy, and fewer than 100 colorectal polyps were found; a 48-year-old woman who happened to be the mother of the 23-year-old man also showed fewer than 100 colorectal polyps on colonoscopy. Genetic analysis revealed a novel frameshift mutation in exon 15 of the APC gene. The deletion of adenine-guanine with the insertion of thymine in c.3833-3834 resulted in the formation of stop codon 1,287 in both patients. The patients were treated with sulindac due to their refusal to undergo colectomy. The annual follow-up upper endoscopy and colonoscopy in the following 2 years revealed significant regression of the colorectal polyps in both patients.
Subject(s)
Female , Humans , Adenoma , Adenomatous Polyposis Coli , Age of Onset , Codon, Terminator , Colectomy , Colonoscopy , Disulfiram , Endoscopy , Exons , Follow-Up Studies , Frameshift Mutation , Genes, APC , Germ-Line Mutation , Mothers , Polyps , Sulindac , ThymineABSTRACT
<p><b>INTRODUCTION</b>The G2385R and R1628P LRRK2 gene variants have been associated with an increased risk of Parkinson's disease (PD) in the Asian population. Recently, a new LRRK2 gene variant, A419V, was reported to be a third risk variant for PD in Asian patients. Our objective was to investigate this finding in our cohort of Asian subjects.</p><p><b>MATERIALS AND METHODS</b>Eight hundred and twenty-eight subjects (404 PD patients, and 424 age and gender-matched control subjects without neurological disorders) were recruited. Genotyping was done by Taqman® allelic discrimination assay on an Applied Biosystems 7500 Fast Real-Time PCR machine.</p><p><b>RESULTS</b>The heterozygous A419V genotype was found in only 1 patient with PD, compared to 3 in the control group (0.4% vs 1.3%), giving an odds ratio of 0.35 (95% confidence interval (CI), 0.01 to 3.79; P = 0.624).</p><p><b>CONCLUSION</b>A419V is not an important LRRK2 risk variant in our Asian cohort of patients with PD. Our data are further supported by a literature review which showed that 4 out of 6 published studies reported a negative association of this variant in PD.</p>
Subject(s)
Adolescent , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Young Adult , Alanine , Genetics , Case-Control Studies , China , Ethnology , Cohort Studies , Cytosine , Gene Frequency , Genetic Variation , Genetics , Genotype , Heterozygote , India , Ethnology , Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 , Malaysia , Ethnology , Parkinson Disease , Genetics , Polymorphism, Genetic , Genetics , Protein Serine-Threonine Kinases , Genetics , Risk Factors , Singapore , Thymine , Valine , GeneticsABSTRACT
Background : Oral submucous fibrosis (OSF) may be considered a collagen metabolic disorder resulting from areca-nut alkaloid exposure and individual variation in collagen metabolism. Due to the complexity of OSF pathogenesis, it is important to elucidate independent and interactive effects of polymorphisms of collagen-related genes on OSF risk. Materials and Methods : This study is focused on seven polymorphisms (SNPs) of transforming growth factor-beta-1 (TGF-beta-1) gene in patients with oral submucous fibrosis (OSF), belonging to south Indian ethnic extraction. The mean age at presentation was 43.9 years, range 23-72 years (n=50, M:F ratio, 2.6:1). DNA samples from 50 subjects of the same ethnic group and comparable demographic features who have had practiced the habit of areca-chewing of almost equal duration, but remained free of disease constituted the controls. All DNA samples were collected progressively and purified from peripheral blood employing standard protocols and tested for SNPs. They included two polymorphisms in the promoter region (C-509T and G-800A), three polymorphisms in exon-1 (Arg25Pro(G915C), Leu10Pro(T869C), Glu47Gly(A979G) and two in 5 ͲUTR regions (C→T(rs13306708) and G→A (rs9282871). The extracted DNA samples along with the primers underwent PCR amplification and the genotypic and allelic frequencies were calculated. All calculations were performed using the SPSS software. The PCR products were purified and subsequently sequenced using Flour S™ multi-imager system (Biorad). The sequenced data were analyzed using the BioEdit sequence analysis software. Results : Out of the seven polymorphisms analyzed, six such as two in the promoter region, three in exon-1 and one in 5¢UTR were found to have a " P" value above 0.05 and hence were not significant. The C→T transition (rs13306708) in the 5¢UTR region recorded a " P" value of 0.03 on comparison and hence was found to be significant. The allelic frequencies for this C→T transition in patients were 68.7% C and 31.2% T (27CC, 15CT, 8TT) and that in controls were 89.5% C and 10.4% T (42CC, 6CT, 2TT). Conclusions : The polymorphism in 5¢UTR C-T in TGF beta 1 gene has a significant association with OSF, being a prime determinant in the pro-angiogenic pathway which has got direct bearing with the pathophysiology of the disease. The proximity of this polymorphism to the transcription site and the associated risk involved is discussed.
Subject(s)
5' Untranslated Regions/genetics , Adenine , Adult , Aged , Areca , Arginine/genetics , Chromosome Mapping , Cytosine , Ethnicity/genetics , Exons/genetics , Female , Gene Frequency/genetics , Genotype , Glutamine/genetics , Glycine/genetics , Guanine , Humans , India , Leucine/genetics , Male , Middle Aged , Oral Submucous Fibrosis/genetics , Oral Submucous Fibrosis/immunology , Polymorphism, Single Nucleotide/genetics , Proline/genetics , Promoter Regions, Genetic/genetics , Thymine , Time Factors , Transforming Growth Factor beta1/genetics , Young AdultABSTRACT
<p><b>OBJECTIVE</b>To establish a RP-HPLC method for simultaneous determination of thymine, hypoxanthine and uracil contents in medical pipefish.</p><p><b>METHOD</b>Samples were extracted with distilled water by ultrasonic wave and separated on Waters C18 column eluted with a mobile phase of 0.05 mol x L(-1) KFI2PO4-acetonitrile (97:3). The flow rate was 0.6 mL x min(-1). The determination wavelength was 260 nm and the column temperature was set at 40 degrees C.</p><p><b>RESULT</b>The method had good linearity in the range of 0.033-0.660 (r = 0.9996), 0.620-12.400 (r = 0.9999), 0.048-0.960 microg (r = 0.9995), with average recoveries of 98.67% (RSD 1.6%), 99.03% (RSD 0.74%), 98.65% (RSD 1.8%), for thymine, hypoxanthine and uracil respectively.</p><p><b>CONCLUSION</b>The simultaneous determination method of thymine, hypoxanthine and uracil in medical pipefish is established by RP-HPLC for the first time. The contents of the three constituents in different kinds of medical pipefish are significantly different. The method is simple, rapid and sensitive, and can be used for control the quality of medical pipefish.</p>
Subject(s)
Animals , Chromatography, High Pressure Liquid , Methods , Hypoxanthine , Medicine, Chinese Traditional , Smegmamorpha , Thymine , UracilABSTRACT
A oxidação do DNA por espécies reativas de oxigênio, como o oxigênio molecular singlete [O2 (1Δg)] , pode estar relacionada ao aparecimento de mutações e ao desenvolvimento de doenças. O O2 (1Δg) pode ser gerado biologicamente por reação de fotossensibilização, pela reação de H2O2 e HOCl e pela decomposição de peróxidos orgânicos contendo hidrogênio alfa (α-ROOH), na presença de metais de transição (Fe2+, Cu2+) ou HOCl. A decomposição de α-ROOH, como hidroperóxidos de lipídeos ou proteínas na presença de metais de transição, pode gerar O2 (1Δg) via mecanismo de Russell. Neste mecanismo, a oxidação de α -ROOH gera radicais peroxila, que podem reagir entre si, formando um intermediário tetraóxido linear. Este intermediário tetraóxido linear pode decompor através de um mecanismo cíclico e produzir O2 (1Δg), um álcool e um composto carbonílico. Como a decomposição de α-ROOH pelo mecanismo de Russell pode ser uma importante fonte biológica de O2 (1Δg) decidimos investigar se o α-hidroperóxido de timina, 5-(hidroperoximetil)uracil (5-HMPU), poderia gerar esta espécie reativa na presença de metais (Ce4+, Fe2+, Cu2+) e HOCl. Outro objetivo foi avaliar os efeitos oxidativos, em DNA plasmidial (pBR322), da decomposição de 5-HPMU na presença de Cu2+. A geração de O2 (1Δg) na reação de 5-HPMU e Ce4+ ou HOCl foi demonstrada por meio do monitoramento da emissão de luz monomolecular de O2 (1Δg) na região do infravermelho próximo (IR-próximo, λ = 1270 nm) e bimolecular na região do visível (λ = 634 e 703 nm). A aquisição do espectro de emissão de O2 (1Δg) forneceu evidências inequívocas da geração desta espécie reativa na reação de 5-HPMU e Ce4+ ou HOCl. Além disto, a formação de O2 (1Δg) na reação de 5-HPMU e Fe2+, Cu2+ ou HOCl foi demonstrada através da captação química de O2 (1Δg) utilizando 9,10- divinilsulfonatoantraceno (AVS) e detecção por HPLC/MS/MS do endoperóxido (AVSO2) formado. A detecção por HPLC/MS/MS dos produtos de decomposição de 5-HPMU...
Oxidation of DNA by singlet molecular oxygen O2 (1Δg) can be involved in the development of mutations and diseases. In vivo, O2 (1Δg) can be generated by photosensitization reaction, H2O2 and HOCl reaction and decomposition of organic hydroperoxides with α-hydrogen (α-ROOH) in the presence of metal ions (Fe2+, Cu2+) or HOCl. The α-ROOH decomposition, such as lipid or protein hydroperoxides in the presence of metal ions or HOCl can generate O2 (1Δg) by Russell mechanism. In this mechanism, the self-reaction of peroxyl radicals generates a linear tetraoxide intermediate that decomposes to O2 (1Δg) , an alcohol and an aldehyde. Therefore, the purpose of this work is to investigate if O2 (1Δg) can be generated by α-thymine hydroperoxide, 5- (hydroperoxymethyl)uracil (5-HPMU) in the presence of Ce4+, Fe2+, Cu2+ or HOCl. Another purpose is to study base modification and strand breaks formation in plasmid DNA (pBR322) by 5-HPMU decomposition in the presence of Cu2+. The generation of O2 (1Δg) in the reaction of 5- HPMU and Ce4+ or HOCl was monitored by monomol light emission in the near-infrared region (NIR, λ = 1270 nm) and dimol light emission in the visible region (λ = 634 e 703 nm). The generation of O2 (1Δg) during the reaction of 5-HPMU and Ce4+ or HOCl was confirmed by acquisition of the light emission spectrum in the NIR. Furthermore, the generation of O2 (1Δg) produced by 5-HPMU and Fe2+, Cu2+ or HOCl was also confirmed by chemical trapping using anthracene-9,10-divinylsulfonate (AVS) and HPLC/MS/MS detection of the corresponding endoperoxide (AVSO2). The detection by HPLC/MS/MS of 5-(hydroxymethyl)uracil (5-HMU) and 5-formyluracil (5-FoU), two 5-HPMU decomposition products, support the Russell mechanism. Plasmid results from pBR322, 5-HPMU and Cu2+ reaction showed formation of DNA open circular form (OC), probably produced by 5-HPMU peroxyl and alkoxyl radicals. Additionally, the reaction of pBR322, 5-HPMU and Cu2+ following by Fpg and NTH enzyme treatment...
Subject(s)
Biologic Oxidation/methods , Singlet Oxygen/chemistry , Thymine/chemical synthesis , Chromatography, High Pressure Liquid , Luminescence , Uracil/chemistryABSTRACT
<p><b>AIM</b>To clarify the role of PTCH in patients with NBCCS-related and non-sydromic keratocystic odontogenic tumors.</p><p><b>METHODOLOGY</b>Mutation analysis was undertaken in 8 sporadic and 4 NBCCS-associated KCOTs.</p><p><b>RESULTS</b>Four novel and two known mutations were identified in 2 sporadic and 3 syndromic cases, two of which being germline mutations (c.2179delT, c.2824delC) and 4 somatic mutations (c.3162dupG, c.1362-1374dup, c.1012 C>T, c.403C>T).</p><p><b>CONCLUSION</b>Our findings suggest that defects of PTCH are associated with the pathogenesis of syndromic as well as a subset of non-syndromic KCOTs.</p>
Subject(s)
Adolescent , Adult , Female , Humans , Male , Middle Aged , Amino Acid Sequence , Basal Cell Nevus Syndrome , Genetics , Chromatography, High Pressure Liquid , Codon, Nonsense , Genetics , Codon, Terminator , Genetics , Conserved Sequence , Genetics , Cytosine , Exons , Genetics , Frameshift Mutation , Genetics , Gene Duplication , Germ-Line Mutation , Genetics , Guanine , Mutation , Genetics , Mutation, Missense , Genetics , Odontogenic Tumors , Genetics , Patched Receptors , Patched-1 Receptor , Receptors, Cell Surface , Genetics , Reverse Transcriptase Polymerase Chain Reaction , Sequence Deletion , Genetics , Syndrome , Threonine , Genetics , ThymineABSTRACT
To analyze the nucleotide polymorphism and length polymorphism of C-stretch of HVR 1 (Hypervariable Region I) of mtDNA D-loop in the maternal lineages in Koreans, sequencing of C-stretch, GeneScan analysis and cloning of a cases were performed in 266 random objects and 128 families which were confirmed by STR analysis of autosome, X chromosome and nucleotide polymorphism of mitochondrial DNA D-loop. C- stretch was classified into two groups. First group (the group of nucleotide polymorphism 74.2%) has 14 bases which show nucleotide polymorphism composed of adenine, cytosine and thymine without length polymorphism and second group (poly C tract 25.8%) shows length polymorphism by the changes of the number of adenine and cytosine. The patterns of nucleotide polymorphism were as follows: A4C5TC4 (64.8%), A4C5TC2TC (0.8%), A4C4TTC2TC (0.8%), A4C3TCTC4 (5.5%), A4C2TC2TC4 (0.8%), A4CTC3TC4 (0.8%), A4TC4TC4 (0.8%). The pattern of length polymorphism of poly C tract were as follows : LP10-16 (3.0%), LP11-16 (6.1%), LP11-17 (27.2%), LP11-18 (6.1%), LP12-16 (12.1%), LP12- 17 (39.4%), LP12-18 (3.0%), LP13-16 (3.0%) The copy number ratios of each fragment length in the same pattern of length polymorphism were various, and this data were valuable in individual identification because of the quantitative polymorphism of each fragment length. The correlation coefficients of copy number ratio of each fragment length in the families were more than 0.98 in 84.8% (28 of 33 families) of cases, which was interpreted as maternal inheritance of the copy number ratio of fragment length. However, in some cases (9.1%, 3 of 33 families), the correlation value of fragment length were less than 0.96 and in 2 cases of 33 families (6.1%), were 0.89 and 0.75 which suggested a possibility of mutation in the quantitative polymorphism although the length polymorphism were maternally inherited. From the above results, sequencing analysis of nucleotide polymorphism and GeneScan analysis of C- stretch must be combined to clearly identify the nucleotide polymorphism, length polymorphism, and quantitative polymorphism of C-stretch of HVR 1 of mtDNA D-loop.
Subject(s)
Humans , Adenine , Clone Cells , Cloning, Organism , Coat Protein Complex I , Cytosine , DNA, Mitochondrial , Poly C , Thymine , Wills , X ChromosomeSubject(s)
Adolescent , Adaptation, Biological , Genes , Genetic Code , Genome, Human , Phenotype , Adenine , Cytosine , Guanine , ThymineABSTRACT
<p><b>OBJECTIVE</b>To study the chemical constitutes of Acantophora spicifera.</p><p><b>METHOD</b>Compounds were isolated by normal phase silica gel and Sephadex LH-20 gel column chromatography, and reverse-phase HPLC, as well as recrystallization. Their structures were elucidated by spectroscopic methods.</p><p><b>RESULT</b>Seven compounds were isolated from A. spicifera and their structures were identified as aplysin (1), loloilide (2), (R)-(-)-dehydrovomifoliol (3), uracil (4), thymine (5), 1-methoxy-4-(1-propenyl) benzene (6).</p><p><b>CONCLUSION</b>The compounds were obtained from this genus for the first time. Compound 6 was firstly obtained from marine organisms.</p>
Subject(s)
Chromatography , Methods , Chromatography, High Pressure Liquid , Methods , Rhodophyta , Chemistry , Sesquiterpenes , Chemistry , Styrenes , Chemistry , Thymine , Chemistry , Uracil , ChemistryABSTRACT
5-fluorouracil (5-FU) is an antimetabolite which prevents thymine synthesis and suppresses the utilization of preformed uracil. A variety of cutaneous reactions have been reported with the use of systemic 5-FU, the most common being photosensitivity. We report a case of 5-FU induced phototoxicity in a 73-year-old male. The patient had tender and slightly pruritic scaly and crusted erythema on sun-exposed areas. A biopsy revealed necrotic keratinocytes with epidermal degeneration. After the cessation of 5-FU, the skin lesions showed a marked improvement, and there was no further photosensitivity to the skin.
Subject(s)
Aged , Humans , Male , Biopsy , Dermatitis, Phototoxic , Erythema , Fluorouracil , Keratinocytes , Skin , Thymine , UracilABSTRACT
Purine & pyrimidine nucleotides are basic constituents of cellular DNA and RNA polynucleotides. Their function includes regulation of cell metabolism and function, energy conservation and transport and formation of coenzymes and active intermediates of phospholipids and carbohydrate metabolism. The origin of cellular purines and pyrimidines is almost exclusively endogenous source, and the dietary purines play only a minor role. Diagnostic and clinical markers of purine and pyrimidine nucleotide disorders are the level of uric acid, xanthine, hypoxanthine, orotic acid, uracil, thymine, dihydrouracil, dihydrothymine, and succinyladenosine. Clinical manifestations of purine and pyrimidine metabolic disorders are crystalluria and acute renal failure, infections, failure to thrive, and anemia. One of purine metabolic disorders, Lesch-Nyhan disease, is X-linked recessive disorder, presenting motor delay, cerebral palsy, involuntary movements, self-injurious behavior, hyperurcemia, uricosuria, urinary calculi and gouty arthritis. Hypoxanthine-guanine phosphoribosyl transferase(HPRT) is deficient.
Subject(s)
Acute Kidney Injury , Anemia , Arthritis, Gouty , Carbohydrate Metabolism , Cerebral Palsy , Coenzymes , DNA , Dyskinesias , Failure to Thrive , Hypoxanthine , Lesch-Nyhan Syndrome , Metabolism , Orotic Acid , Phospholipids , Polynucleotides , Purines , Pyrimidine Nucleotides , Pyrimidines , RNA , Self-Injurious Behavior , Thymine , Uracil , Uric Acid , Urinary Calculi , Xanthine , BiomarkersABSTRACT
BACKGROUND: Thymidine phosphorylase (TP) is an enzyme catalyzing the reversible phosphorolysis of thymidine to thymine and 2-deoxyribose-1-phosphate. TP plays a role in angiogenesis. Evidences suggest that infiltrating inflammatory cells adjacent cancer cells may affect tumor cell behavior. To evaluate each of these significances of TP expression in cancer cell and cancer-infiltrating inflammatory cells, we investigated TP expression patterns in cancer cells and infiltrating inflammatory cells adjacent cancer cells separately and the relationship between TP expression and angiogenesis or survival. METHODS: Immunohistochemistry assays were performed with anti-TP monoclonal antibody (Roche Japan) and anti-factor VIII polyclonal antibody (Dako) on 92 paraffin-embedded tissue samples from stomach cancer patients. A single pathologist scored the slides for percent positivity of tumor cells, intensity, localization and distribution of expression. TP reactivity in tumor cells (cancer) and infiltrating mononuclear cells adjacent cancer cells (matrix) was separately accessed. According to the pattern of TP expression, subjects were divided into 4 groups for further analysis: cancer(C;+)/matrix(M;+), cancer(+)/matrix(-), cancer(-)/matrix(+) and cancer(-)/matrix(-). With these 4 subsets of TP expression patterns, we evaluated cancer cell differentiation, intratumoral microvessel density, extent of tumor invasion, LN stage, and patient survival to find any differences among the subsets. RESULTS: Of 92 stomach cancer tissue, C/M(+/+), C/M(+/-), C/M(-/+), and C/M(-/-) were observed in 33patients, 19, 30, and 10, respectively. Microvessel density scores were higher in cancer(+)/matrix(-) group compared in cancer(-)/matrix(-) group (p=0.02). Of 4 TP expression subsets, other clinical factors such as histology, extent of tumor invasion, and LN metastasis were not associated with TP expression. CONCLUSION: This study suggested the TP in cancer-infiltrating inflammatory cell as well as cancer cells themselves may play an important role in angiogenesis as co-active factors in stomach cancer.