Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 21
Filtrar
1.
World J Microbiol Biotechnol ; 31(2): 359-69, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25566818

RESUMO

The process of cocoa fermentation is a very important step for the generation or aromatic compounds, which are attributable to the metabolism of the microorganisms involved. There are some reports about this process and the identification of microorganisms; however, there are no reports identifying the yeasts involved in a Mexican cocoa fermentation process using molecular biology techniques, including restricted fragment length polymorphism (RFLP) and denaturing gradient gel electrophoresis (DGGE). The aim of this study was to identify the main yeast species associated with Mexican cocoa fermentations employing culture-dependent and -independent techniques achieving two samplings with a 1 year time difference at the same site. Isolation of the microorganisms was performed in situ. Molecular identification of yeast isolates was achieved by RFLP analysis and rDNA sequencing. Total DNA from the microorganisms on the cocoa beans was utilized for the DGGE analysis. Bands from the DGGE gels were excised and sequenced. Nineteen isolated yeasts were identified (al specie level), three of which had never before been associated with cocoa fermentations worldwide. The detected predominant yeast varied from one technique to another. Hanseniaspora sp. resulted dominant in DGGE however Saccharomyces cerevisiae was the principal isolated species. In conclusion, the culture-dependent and -independent techniques complement each other showing differences in the main yeasts involved in spontaneous cocoa fermentation, probably due to the physiological states of the viable but non culturable yeasts. Furthermore important differences between the species detected in the two samplings were detected.


Assuntos
Cacau/microbiologia , Técnicas de Tipagem Micológica/métodos , Leveduras/classificação , Leveduras/isolamento & purificação , DNA Fúngico/análise , DNA Ribossômico/análise , Fermentação , Microbiologia de Alimentos , México , Especificidade da Espécie , Leveduras/genética
2.
Food Microbiol ; 26(5): 453-9, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19465240

RESUMO

Debaryomyces hansenii is one of the yeast species most frequently isolated from cheese and salty foods, however little is known about the phenotypic and molecular variability of its strains. In order to explore the possibilities of a large study on its biodiversity, some D. hansenii strains were selectively isolated from pecorino cheese sampled in ten different Italian regions. All isolates were identified as D. hansenii on the basis of conventional and molecular taxonomic analysis. The D1/D2 domain sequences of the 26S-rDNA did not show any variation, confirming the extreme homogeneity of this species. PCR-duplex-RAPD banding patterns analyzed with PCoA showed interesting clustering related to the geographic areas of isolation, although some overlapping between strains derived from different districts could be observed. A FTIR (Fourier Transform Infrared Spectroscopy) metabolomic fingerprint produced groupings weakly related to those observed with RAPD and less associated with the isolation locales. The discriminatory power of metabolomic fingerprint was able to discriminate strains otherwise considered identical. This preliminary study showed that, in spite of the homogeneity at the 26S-rDNA level, the D. hansenii strains exhibit high molecular and metabolomic variability somehow linked to the places of isolation. Further studies will be necessary to better investigate on the link between terroir and strain variability, as well as on the relation between genotypic and metabolomic fingerprints.


Assuntos
Queijo/microbiologia , DNA Fúngico/análise , Debaryomyces/classificação , Debaryomyces/genética , Variação Genética , DNA Ribossômico/análise , Genótipo , Técnicas de Tipagem Micológica , Fenótipo , Filogenia , Técnica de Amplificação ao Acaso de DNA Polimórfico , Sensibilidade e Especificidade , Especificidade da Espécie , Espectroscopia de Infravermelho com Transformada de Fourier
3.
Int J Syst Evol Microbiol ; 59(Pt 5): 1242-51, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19406826

RESUMO

The delineation of species among strains assigned to Debaryomyces hansenii was examined using a gene genealogies-based approach in order to compare spliceosomal intron sequences found in four housekeeping genes (ACT1, TUB2, RPL31 and RPL33). This revealed four distinct groups of strains containing, respectively, D. hansenii var. hansenii CBS 767(T), D. hansenii var. fabryi CBS 789(T), Candida famata var. flareri CBS 1796(T) (the anamorph of D. hansenii var. fabryi CBS 789(T)) and Debaryomyces tyrocola CBS 766(T), whose species status was no longer accepted. The sequence divergence between these groups, reaching in some cases over 20 %, unambiguously isolated the groups as separate taxa, leading to a proposal for the reinstatement of the originally described species D. hansenii CBS 767(T) and D. tyrocola CBS 766(T). The variety D. hansenii var. fabryi was further subdivided into two taxa, Debaryomyces fabryi CBS 789(T) and Candida flareri CBS 1796(T) (previously C. famata var. flareri and Blastodendrion flareri). The comparison of intron sequences therefore exposed cryptic species whose phenotypic traits are not distinguishable from known species, but which have significantly diverged from the genetic point of view. Hence, we describe the new taxon Debaryomyces macquariensis sp. nov. CBS 5571(T) is related to, but clearly distinct from, the Debaryomyces species mentioned above. The approach used in this work has also revealed the existence of populations within the newly delineated species D. hansenii and genetic exchanges between these populations, indicating an unexpected genetic diversity within this part of the genus Debaryomyces.


Assuntos
Íntrons/genética , Técnicas de Tipagem Micológica , Saccharomycetales/classificação , Análise de Sequência de DNA/métodos , Animais , Clonagem Molecular , DNA Fúngico/análise , DNA Fúngico/genética , Proteínas Fúngicas/genética , Humanos , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase/métodos , Saccharomycetales/genética , Especificidade da Espécie
4.
J Dermatol ; 35(6): 354-61, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18578713

RESUMO

Chromoblastomycosis is one of several chronic infectious skin diseases caused by various species of dematiaceous fungi. It is clinically characterized by verrucous skin eruptions and occurs most commonly in tropical and subtropical regions. In Okinawa, a subtropical area, there have been only three reported cases of chromoblastomycosis including the present one. Direct microscopic examination of crust specimens and findings of sclerotic cells in histopathology can confirm the diagnosis, and cultures of crust and/or tissue specimens can identify the causative fungi. We herein report the third case of chromoblastomycosis in Okinawa; it arose in an 87-year-old Japanese woman with a history of Hansen's disease, who lived in a leprosarium in Miyako Island. To identify the causative agent as Fonsecaea pedrosoi, we used the polymerase chain reaction and direct sequencing analysis in addition to the usual methods, which include 20% potassium hydroxide microscopy, histopathological confirmation of sclerotic cells by periodic acid-Schiff stain, culture by Sabouraud's glucose agar, slide culture method, and observation of conidia by scanning electron microscopic examination.


Assuntos
Ascomicetos/isolamento & purificação , Cromoblastomicose/diagnóstico , Dermatoses da Mão/diagnóstico , Pele/microbiologia , Idoso de 80 Anos ou mais , Ascomicetos/genética , Ascomicetos/crescimento & desenvolvimento , Sequência de Bases , Cromoblastomicose/complicações , Cromoblastomicose/microbiologia , DNA Fúngico/análise , Feminino , Dermatoses da Mão/complicações , Dermatoses da Mão/microbiologia , Humanos , Japão , Hanseníase Virchowiana/complicações , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , Pele/patologia , Esporos Fúngicos/citologia
5.
FEMS Yeast Res ; 8(7): 1063-75, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18435743

RESUMO

The aim of the present study was to evaluate the autochthonous yeast population during spontaneous fermentations of grape musts in Austrian wine-producing areas. Investigation of genomic and genetic variations among wine yeasts was a first step towards a long-term goal of selecting strains with valuable enological properties typical for this geographical region. An approach, combining sequences of the D1/D2 domain of the 26S rRNA gene and random amplified polymorphic DNA fingerprinting, was used to characterize yeasts at the species level, whereas the differentiation of Saccharomyces strains was accomplished by amplified fragment length polymorphism fingerprinting. At the beginning of fermentation, representatives of nine genera were identified, with Hanseniaspora and Metschnikowia species characterized most frequently. Saccharomyces cerevisiae and Saccharomyces bayanus var. uvarum strains, which were identified throughout the entire fermentation process, showed a high level of genetic diversity. A number of S. cerevisiae strains were common at multiple wineries, but a wide range of strains with characteristic profiles were characterized at individual locations. This biodiversity survey represents a contribution to the investigation and preservation of genetic diversity of biotechnologically relevant yeasts in Austrian wine-making areas.


Assuntos
Impressões Digitais de DNA/métodos , Saccharomyces , Saccharomycetales , Vinho/microbiologia , Áustria , Biodiversidade , Análise por Conglomerados , DNA Fúngico/análise , Fermentação , Genótipo , Polimorfismo de Fragmento de Restrição , RNA Ribossômico/genética , Técnica de Amplificação ao Acaso de DNA Polimórfico , Saccharomyces/classificação , Saccharomyces/genética , Saccharomyces/isolamento & purificação , Saccharomyces/metabolismo , Saccharomycetales/classificação , Saccharomycetales/genética , Saccharomycetales/isolamento & purificação , Saccharomycetales/metabolismo , Especificidade da Espécie
6.
Int J Food Microbiol ; 120(1-2): 136-45, 2007 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-17628130

RESUMO

We have investigated the bacteria and yeast ecology of the typical Italian Ciauscolo salami that is produced in Central Italy using a polyphasic approach based on culture-dependent and -independent methods. The physico-chemical analyses showed a progressive drop in pH and water activity (aw) during ripening. The viable counts revealed a dominance of lactic acid bacteria (LAB) over coagulase negative cocci (CNC) and yeasts. From the molecular identification of the isolates, the prevalence of Lactobacillus curvatus, Lb. plantarum and Staphylococcus xylosus was shown among the bacteria, while Debaryomyces hansenii was the prevalent species among the yeasts, and it was isolated throughout the whole ripening process. Minority species, namely Rhodotorula mucillaginosa and Trichosporon brassicae, were also recovered from the meat batter. The total microbial community was profiled without cultivation by analyzing the DNA that was directly extracted from the salami samples. Moreover, the cultivable community was profiled by analyzing the DNA recovered from bulk cells that were obtained by harvesting the colonies from serial-dilution agar plates. The 16S rRNA gene V1 and V3 regions were used as targets in the denaturing gradient gel electrophoresis (DGGE) profiling of the LAB and CNC communities, respectively, while the diversity and dynamics of the yeast population were assessed by analyzing a portion of the 28S rRNA gene. Our findings suggest that the microbial diversity of fermented meat products can be successfully investigated by this polyphasic approach that is based on the assessment of both the total and the cultivable community diversity.


Assuntos
Microbiologia de Alimentos , Lactobacillus/isolamento & purificação , Produtos da Carne/microbiologia , Staphylococcus/isolamento & purificação , Leveduras/isolamento & purificação , Contagem de Colônia Microbiana , DNA Bacteriano/análise , DNA Fúngico/análise , Eletroforese em Gel de Poliacrilamida/métodos , Fermentação , Concentração de Íons de Hidrogênio , Itália , Lactobacillus/genética , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/química , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Staphylococcus/genética , Água/metabolismo , Leveduras/genética
7.
Food Microbiol ; 23(4): 341-50, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16943023

RESUMO

An integrated approach including phenotypic (morphological, biochemical and physiological characterization) and genotypic (RAPD-PCR, sequencing of D1/D2 domain of 26S rRNA encoding gene) methods was used for the identification of yeasts isolated from different milk products. There were 513 isolates in all, 460 ascomycetous and 53 basidiomycetous yeasts. The yeast isolates were characterized on the basis of their biochemical and physiological properties, and the D1/D2 domain of 26S rDNA was sequenced in selected strains. Relying on the obtained results from both the data-sets, corresponding type strains were selected and compared with the respective yeast isolates from milk products by RAPD fingerprinting. The strains showing a degree of similarity >80% were considered conspecific. By means of the applied techniques it was possible to identify 92% yeast isolates at species level. Debaryomyces hansenii, Geotrichum candidum, Kluyveromyces marxianus, Yarrowia lipolytica and Candida zeylanoides are the most frequently isolated species. The majority of the yeasts were isolated from fresh and sour curd cheese. A comparison of the results obtained by phenotypic and genotypic investigation revealed that the identification based on classical methods was supported by genotypic characterization in only 54% of examined isolates. The results described in this work show that the applied molecular identification is a reliable approach to the identification of yeasts associated with milk products in contrast to the conventional biochemical and physiological tests. The identification of new yeast species requires additional genetic markers such as sequencing of different genes or DNA:DNA hybridization.


Assuntos
DNA Fúngico/análise , Laticínios/microbiologia , Técnica de Amplificação ao Acaso de DNA Polimórfico/métodos , Leveduras/classificação , Leveduras/isolamento & purificação , Contagem de Colônia Microbiana , Microbiologia de Alimentos , Marcadores Genéticos , Genótipo , Técnicas de Tipagem Micológica , Fenótipo , Filogenia , Especificidade da Espécie , Leveduras/genética
8.
FEMS Yeast Res ; 6(1): 102-11, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16423075

RESUMO

We have evaluated the effect of grape maturity and cold maceration prior to fermentation on the yeast ecology during wine fermentation. Non-Saccharomyces strains were selectively isolated and identified using two rapid PCR techniques, namely enterobacterial repetitve intergenic consensus-PCR and PCR-intron splice sites, in various wine fermentation conditions. These identifications were further complemented and confirmed by restriction fragment length poymorphism and sequencing analysis of the 5.8S-ITS and D1/D2 ribosomal regions, respectively. Eleven species belonging to five genera were identified. Candida stellata, Hanseniaspora uvarum and Hanseniaspora osmophila were the dominant species, representing almost 90% of the isolates. Minor strains presented different species of the genera Candida, Issatchenkia, Zygoascus and Zygosaccharomyces. Selective isolation made it possible to isolate some species that were hardly related to the wine-making process, such as Issatchenkia hanoiensis, a new species that has only been described recently.


Assuntos
Ecossistema , Evolução Molecular , Variação Genética , Saccharomycetales/crescimento & desenvolvimento , Vinho/microbiologia , Temperatura Baixa , DNA Fúngico/análise , DNA Ribossômico/análise , Fermentação , Técnicas de Tipagem Micológica , Reação em Cadeia da Polimerase/métodos , RNA Ribossômico/genética , Saccharomycetales/classificação , Saccharomycetales/genética , Saccharomycetales/isolamento & purificação , Especificidade da Espécie , Vitis/crescimento & desenvolvimento , Vitis/metabolismo , Vitis/microbiologia
9.
Arch Microbiol ; 184(3): 187-93, 2005 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-16187098

RESUMO

Twenty-nine yeast strains were isolated from the ascocarps of black and white truffles (Tuber melanosporum Vitt. and Tuber magnatum Pico, respectively), and identified using a polyphasic approach. According to the conventional taxonomic methods, MSP-PCR fingerprinting and sequencing of the D1/D2 domain of 26S rDNA, the strains were identified as Candida saitoana, Debaryomyces hansenii, Cryptococcus sp., Rhodotorula mucilaginosa, and Trichosporon moniliiforme. All isolates assimilated L: -methionine as a sole nitrogen source and produced the volatile organic compounds (VOCs), 2-methyl butanol, 3-methyl butanol, methanethiol, S-methyl thioacetate, dimethyl sulfide, dimethyl disulfide, dimethyl trisulfide, dihydro-2-methyl-3(2H)-thiophenone and 3-(methylthio)-1-propanol (MTP). ANOVA analysis of data showed significant (P<0.01) differences in VOCs produced by different yeasts, with MTP as the major component (produced at concentrations ranging from 19.8 to 225.6 mg/l). In addition, since some molecules produced by the isolates of this study are also characteristic of truffle complex aroma, it is possible to hypothesize a complementary role of yeasts associated with this ecosystem in contributing to final Tuber spp. aroma through the independent synthesis of yeast-specific volatile constituents.


Assuntos
Ascomicetos , Compostos Orgânicos/metabolismo , Leveduras/isolamento & purificação , Leveduras/metabolismo , DNA/química , DNA/genética , Impressões Digitais de DNA , DNA Fúngico/análise , Cromatografia Gasosa-Espectrometria de Massas , Metionina/metabolismo , Dados de Sequência Molecular , Compostos Orgânicos/química , RNA Ribossômico/genética , Análise de Sequência de DNA , Leveduras/classificação , Leveduras/genética
10.
Int J Food Microbiol ; 103(3): 295-304, 2005 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-16099314

RESUMO

The subtype of the Saccharomyces cerevisiae yeast species known as S. cerevisiae Hansen CBS 5926 was formerly believed to be a separate species, Saccharomyces boulardii. It is widely considered non-pathogenic and is used as a probiotic agent for treatment and prevention of diarrhea. The biological properties of Saccharomyces spp. show considerable intraspecies variability and the beneficial properties of probiotic yeasts are considered strain-specific. Septicemia and fungemia caused by S. boulardii have recently been described in both immunocompromised and immunocompetent patients receiving biotherapy with this yeast. It cannot be distinguished from other S. cerevisiae strains by phenotypic criteria, so identification of these infections requires molecular typing. To identify the most effective approach for distinguishing S. boulardii, we typed 35 isolates of S. cerevisiae, of which 27 were from various clinical specimens and 8 were isolates of S. boulardii (6 obtained from probiotic preparations and 2 from clinical specimens) using four different molecular methods, two based on PCR-restriction enzyme analysis or sequencing of rDNA spacer regions, the third based on microsatellite polymorphism analysis of the S. cerevisiae genes YKL139w and YLR177w, and the last based on hybridization analysis with retrotransposon Ty917. Several clinical isolates appeared to be identical to one or more other isolates with the first three methods used, whereas with the Ty917 hybridization method all of the isolates tested appeared to be very heterogeneous. The eight S. boulardii isolates were clearly distinguishable from the clinical S. cerevisiae isolates only with Ty917 hybridization and microsatellite DNA analyses. In the latter method, the eight S. boulardii isolates exhibited an allelic variant at one of loci tested that was not shared with any other strain. Our results suggest that microsatellite polymorphism analysis of the YKL139w and YLR177w genes, as well as the analysis by Ty917 hybridization, are the most useful tools for a correct identification of S. boulardii strains.


Assuntos
DNA Fúngico/análise , Probióticos , Saccharomyces/classificação , Saccharomyces/genética , Southern Blotting , Repetições de Microssatélites , Técnicas de Tipagem Micológica , Filogenia , Polimorfismo Genético , Saccharomyces/patogenicidade , Saccharomyces cerevisiae/classificação , Saccharomyces cerevisiae/genética , Especificidade da Espécie
11.
Int J Food Microbiol ; 101(3): 293-302, 2005 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-15925712

RESUMO

In the present work, we have analysed the yeast microbiota present in a manufacturing plant of candied fruits and nougats. Four yeasts species (Zygosaccharomyces bailii, Zygosaccharomyces rouxii, Sporobolomyces roseus, and Debaryomyces hansenii) and a filamentous fungi (Nectria mauriiticola) were identified according to restriction analysis of 5.8S-ITS rDNA. These identifications were subsequently confirmed by sequencing the D1/D2 domain of the 26S rRNA gene. Z. rouxii and Z. bailii were isolated at high frequency along the whole manufacturing process. Since food alteration by Z. bailii and Z. rouxii is the cause of important economic losses for the food industry, there is a need for differentiating yeasts at the strain level as an essential part of quality control programs in this industry. For this purpose, we have tested the performance of three molecular techniques (RFLP mtDNA, RAPD-PCR, and microsatellite with (GAC)5 and (GTG)5 primers) to differentiate strains belonging to these two Zygosaccharomyces species. Those techniques with the best discriminatory power were applied to differentiate Zygosaccharomyces species isolates. The results of this analysis indicate that one strain of Z. bailii and two strains of Z. rouxii were involved in the spoilage of candied fruits. Moreover, the Z. bailii strain was also present in the spoiled nougat, hence being responsible of this alteration.


Assuntos
Doces/microbiologia , DNA Fúngico/análise , Contaminação de Alimentos/análise , Microbiologia de Alimentos , Fungos/isolamento & purificação , Leveduras/isolamento & purificação , Fungos/crescimento & desenvolvimento , Reação em Cadeia da Polimerase/métodos , Técnica de Amplificação ao Acaso de DNA Polimórfico/métodos , Mapeamento por Restrição , Leveduras/crescimento & desenvolvimento
12.
Appl Environ Microbiol ; 71(4): 1977-86, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15812029

RESUMO

In this study, the microbial ecology of three naturally fermented sausages produced in northeast Italy was studied by culture-dependent and -independent methods. By plating analysis, the predominance of lactic acid bacteria populations was pointed out, as well as the importance of coagulase-negative cocci. Also in the case of one fermentation, the fecal enterocci reached significant counts, highlighting their contribution to the particular transformation process. Yeast counts were higher than the detection limit (> 100 CFU/g) in only one fermented sausage. Analysis of the denaturing gradient gel electrophoresis (DGGE) patterns and sequencing of the bands allowed profiling of the microbial populations present in the sausages during fermentation. The bacterial ecology was mainly characterized by the stable presence of Lactobacillus curvatus and Lactobacillus sakei, but Lactobacillus paracasei was also repeatedly detected. An important piece of evidence was the presence of Lactococcus garvieae, which clearly contributed in two fermentations. Several species of Staphylococcus were also detected. Regarding other bacterial groups, Bacillus sp., Ruminococcus sp., and Macrococcus caseolyticus were also identified at the beginning of the transformations. In addition, yeast species belonging to Debaryomyces hansenii, several Candida species, and Willopsis saturnus were observed in the DGGE gels. Finally, cluster analysis of the bacterial and yeast DGGE profiles highlighted the uniqueness of the fermentation processes studied.


Assuntos
Bactérias/isolamento & purificação , Ecossistema , Produtos da Carne/microbiologia , Leveduras/isolamento & purificação , Bactérias/classificação , Bactérias/genética , Bactérias/crescimento & desenvolvimento , Contagem de Colônia Microbiana , Meios de Cultura , DNA Bacteriano/análise , DNA Fúngico/análise , Eletroforese/métodos , Fermentação , Itália , Reação em Cadeia da Polimerase/métodos , Análise de Sequência de DNA , Leveduras/classificação , Leveduras/genética , Leveduras/crescimento & desenvolvimento
13.
FEMS Yeast Res ; 5(4-5): 441-53, 2005 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15691749

RESUMO

Samples of cocoa beans were taken on two separate occasions during heap and tray fermentations in Ghana, West Africa. In total 496 yeast isolates were identified by conventional microbiological analyses and by amplification of their ITS1-5.8S rDNA-ITS2 regions. For important species the identifications were confirmed by sequencing of the D1/D2 domain of the 5' end of the large subunit (26S) rDNA. Assimilations of organic acids and other carbon compounds were conducted. For dominant yeasts intraspecies variations were examined by determination of chromosome length polymorphism (CLP) using pulsed-field gel electrophoresis. For the heap fermentations maximum yeast cell counts of 9.1 x 10(7) were reached, whereas maximum yeast counts of 6.0 x 10(6) were reached for the tray fermentations. Candida krusei was found to be the dominant species during heap fermentation, followed by P. membranifaciens, P. kluyveri, Hanseniaspora guilliermondii and Trichosporon asahii, whereas Saccharomyces cerevisiae and P. membranifaciens were found to be the dominant species during tray fermentation followed by low numbers of C. krusei, P. kluyveri, H. guilliermondii and some yeast species of minor importance. For isolates within all dominant species CLP was evident, indicating that several different strains are involved in the fermentations. Isolates of C. krusei, P. membranifaciens, H. guilliermondii, T. asahii and Rhodotorula glutinis could be found on the surface of the cocoa pods and in some cases on the production equipment, whereas the origin of e.g. S. cerevisiae was not indicated by the results obtained. In conclusion, the results obtained show that fermentation of cocoa beans is a very inhomogeneous process with great variations in both yeast counts and species composition. The variations seem to depend especially on the processing procedure, but also the season and the post-harvest storage are likely to influence the yeast counts and the species composition.


Assuntos
Cacau/metabolismo , Cacau/microbiologia , Leveduras/classificação , Leveduras/genética , África Ocidental , DNA Fúngico/análise , DNA Espaçador Ribossômico/análise , Fermentação , Variação Genética , Dados de Sequência Molecular , RNA Ribossômico/genética , Análise de Sequência de DNA , Leveduras/metabolismo
14.
FEMS Yeast Res ; 5(4-5): 455-61, 2005 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15691750

RESUMO

The amplification by PCR of the Intergenic Spacer region (IGS) of rDNA followed by Restriction Fragment Length Polymorphism (RFLP) analysis was evaluated as a potential method for the identification of Debaryomyces hansenii among other yeast species that frequently contaminate Intermediate-Moisture Foods (IMFs). For a first rapid differentiation at the species level, the determination of the IGS-PCR fragment size was found to be a useful approach. The digestion of this region with the enzymes HhaI, HapII and MboI resulted in specific patterns that permit the identification of D. hansenii among other yeast species. This method also permitted the discrimination between the D. hansenii varieties (var. hansenii and var. fabryi) as well as the differentiation of D. hansenii from other species of the genus, such as Debaryomyces pseudopolymorphus or Debaryomyces polymorphus var. polymorphus. The IGS-PCR RFLP method was assayed for the differential detection of D. hansenii in contaminated or spoiled IMF products and compared with traditional identification procedures, resulting in a 100% detection rate for D. hansenii.


Assuntos
DNA Intergênico/análise , Microbiologia de Alimentos , Polimorfismo de Fragmento de Restrição , Saccharomycetales/classificação , Saccharomycetales/isolamento & purificação , Animais , DNA Fúngico/análise , DNA Fúngico/isolamento & purificação , Técnicas de Tipagem Micológica , Reação em Cadeia da Polimerase , Saccharomycetales/genética , Água
15.
Int J Food Microbiol ; 95(1): 51-9, 2004 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-15240074

RESUMO

The occurrence of yeast microflora in artisanal Fiore Sardo cheese during ripening was studied. Mean yeast counts ranged from 2.64+/-1 log(10) cfu ml(-1) in milk to 0.65+/-1 log(10) cfu g(-1) in 9 months cheese, with the higher counts observed in 48-h-old cheese. Strains belonging to the prevalent species Debaryomyces hansenii, Kluyveromyces lactis, Geotrichum candidum, Candida zeylanoides and Candida lambica were selected for technological and genotypic characterization. All D. hansenii strains fermented glucose and assimilated lactate, a high percentage assimilated citrate and only a few showed proteolytic and lipolytic activity. All K. lactis strains were able to both assimilate and ferment lactose, to assimilate lactate and to exhibit proteolytic activity on casein. G. candidum assimilated lactate and some strains showed proteolytic and lipolytic activity. C. zeylanoides showed lipolytic activity on tweens and the majority of strains assimilated citrate. C. lambica fermented glucose and assimilated lactate. Considering their diffusion and technological characteristics, an important role for K. lactis and G. candidum in the early stages of the ripening process and for D. hansenii after the first month of ripening can be suggested. RAPD-PCR analysis with M13 primer grouped the isolates in well-separated clusters with their type strains and confirmed the previous phenotypic identification. The high intraspecific homogeneity observed in tested strains could be explained by their isolation from a common substrate and from neighbouring geographical areas. This preliminary study allowed us to isolate autochthon yeast strains showing particular properties which can contribute to the production of typical cheese taste and flavour.


Assuntos
Queijo/microbiologia , Leveduras/classificação , Leveduras/isolamento & purificação , Animais , Metabolismo dos Carboidratos , Contagem de Colônia Microbiana , DNA Fúngico/análise , Fermentação , Microbiologia de Alimentos , Leite/microbiologia , Filogenia , Técnica de Amplificação ao Acaso de DNA Polimórfico , Fatores de Tempo , Leveduras/metabolismo
16.
Syst Appl Microbiol ; 25(2): 287-93, 2002 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-12353885

RESUMO

Wine yeasts were isolated from fermenting Garnatxa and Xarel.lo musts fermented in a newly built and operated winery between 1995 and 2000. The species of non-Saccharomyces yeasts and the Saccharomyces cerevisiae strains were identified by ribosomal DNA and mitochondrial DNA RFLP analysis respectively. Non-Saccharomyces yeasts, particularly Hanseniaspora uvarum and Candida stellata, dominated the first stages of fermentation. However Saccharomyces cerevisiae was present at the beginning of the fermentation and was the main yeast in the musts in one vintage (1999). In all the cases, S. cerevisiae took over the process in the middle and final stages of fermentation. The analysis of the S. cerevisiae strains showed that indigenous strains competed with commercial strains inoculated in other fermentation tanks of the cellar. The continuous use of commercial yeasts reduced the diversity and importance of the indigenous S. cerevisiae strains.


Assuntos
DNA Fúngico/análise , DNA Mitocondrial/análise , DNA Ribossômico/análise , Vinho/microbiologia , Leveduras/isolamento & purificação , Álcoois/metabolismo , DNA Mitocondrial/genética , DNA Espaçador Ribossômico/genética , Ecossistema , Fermentação , Seguimentos , Reação em Cadeia da Polimerase , Polimorfismo de Fragmento de Restrição , Saccharomyces cerevisiae/isolamento & purificação , Microbiologia do Solo , Leveduras/classificação , Leveduras/genética
17.
FEMS Yeast Res ; 1(4): 279-89, 2002 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-12702331

RESUMO

Three molecular methods, RAPD-PCR analysis, electrophoretic karyotyping and RFLP of the PCR-amplified ITS regions (ITS1, ITS2 and the intervening 5.8S rDNA), were studied for accurate identification of Hanseniaspora and Kloeckera species as well as for determining inter- and intraspecific relationships of 74 strains isolated from different sources and/or geographically distinct regions. Of these three methods, PCR-RFLP analysis of ITS regions with restriction enzymes DdeI and HinfI is proposed as a rapid identification method to discriminate unambiguously between all six Hanseniaspora species and the single non-ascospore-forming apiculate yeast species Kloeckera lindneri. Electrophoretic karyotyping produced chromosomal profiles by which the seven species could be divided into four groups sharing similar karyotypes. Although most of the 60 strains examined exhibited a common species-specific pattern, a different degree of chromosomal-length polymorphism and a variable number of chromosomal DNA fragments were observed within species. Cluster analysis of the combined RAPD-PCR fingerprints obtained with one 10-mer primer, two microsatellite primers and one minisatellite primer generated clusters which with a few exceptions are in agreement with the groups as earlier recognized in DNA-DNA homology studies.


Assuntos
Ascomicetos/classificação , Variação Genética , Saccharomycetales/classificação , Animais , Ascomicetos/genética , DNA Fúngico/análise , DNA Ribossômico/análise , Desoxirribonucleases de Sítio Específico do Tipo II/metabolismo , Eletroforese em Gel de Campo Pulsado , Humanos , Cariotipagem , Técnicas de Tipagem Micológica , Polimorfismo de Fragmento de Restrição , Técnica de Amplificação ao Acaso de DNA Polimórfico , Saccharomycetales/genética , Especificidade da Espécie
18.
Lett Appl Microbiol ; 30(1): 5-9, 2000 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-10728551

RESUMO

In the present work randomly amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) with primers M13 and RF2 was applied to the identification at species level of yeast strains isolated from cheeses. RAPD-PCR analysis of the type strains of different yeast species gave distinctive band profiles that allowed a clear differentiation of all the considered species. Forty-two of the 48 dairy associated yeasts were clearly assigned to the species Saccharomyces cerevisiae, Kluyveromyces marxianus (anamorph Candida kefyr), Kluyveromyces lactis (anamorph Candida sphaerica), Debaryomyces hansenii (anamorph Candida famata), Yarrowia lipolytica and Torulaspora delbrueckii (anamorph Candida colliculosa). The method, which is rapid and easy to perform, could be a useful tool for the identification of yeasts present in dairy products.


Assuntos
Queijo/microbiologia , DNA Fúngico/análise , Microbiologia de Alimentos , Reação em Cadeia da Polimerase/métodos , Leveduras/classificação , Sequência de Bases , Primers do DNA/genética , Eletroforese , Dados de Sequência Molecular , Polimorfismo Genético/genética , Análise de Sequência de DNA , Especificidade da Espécie , Leveduras/genética
19.
Int J Syst Bacteriol ; 47(4): 1102-6, 1997 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9336914

RESUMO

Twenty-eight yeast strains presumed to represent Torulaspora delbrueckii were analyzed by randomly amplified polymorphic DNA-PCR analysis. Four strains (HUT 7161, IFO 1138, IFO 1145, and IFO 1956) that were considerably different from the type strain were further investigated. Morphological and physiological characteristics revealed that strains HUT 7161 and IFO 1145 belong to the genus Debaryomyces rather than the genus Torulaspora, and the former strain may represent Debaryomyces hansenii. Strains IFO 1138 and IFO 1956 were classified as either Saccharomyces castellii or Saccharomyces dairensis by identification keys involving physiological tests. On the basis of analysis of the sequences of two rRNA internal spacer regions, strains IFO 1138 and IFO 1956 were closely related to S. castellii and strains HUT 7161 and IFO 1145 were outside members of the genera Torulaspora, Zygosaccharomyces, and Saccharomyces.


Assuntos
Ascomicetos/classificação , Filogenia , Ascomicetos/genética , Meios de Cultura , DNA Fúngico/análise , DNA Ribossômico/análise , Dados de Sequência Molecular , RNA Ribossômico 18S/análise , RNA Ribossômico 28S/análise , Técnica de Amplificação ao Acaso de DNA Polimórfico
20.
Antonie Van Leeuwenhoek ; 53(2): 77-84, 1987.
Artigo em Inglês | MEDLINE | ID: mdl-3662481

RESUMO

Deoxyribonucleic acid reassociation studies of 24 different wine and beer-associated strains of Saccharomyces confirmed the presence of three separate species. S. cerevisiae and S. bayanus strains had only 22% of their genomes in common. S. pastorianus, with intermediate hybridization values between S. cerevisiae and S. bayanus (52 and 72%, respectively) could possibly be a natural hybrid of the two species. S. pastorianus replaces S. carlsbergensis with which it is homologous for 93% of its genome, since the former species was described first by Hansen in 1904. These data do not agree with the results of traditional physiological tests.


Assuntos
DNA Fúngico/análise , Genes Fúngicos , Saccharomyces/classificação , Fermentação , Galactose/metabolismo , Hibridização de Ácido Nucleico , Saccharomyces/genética , Saccharomyces/metabolismo , Espectrofotometria
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA