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Methods Mol Biol ; 2143: 63-82, 2020.
Article in English | MEDLINE | ID: mdl-32524473

ABSTRACT

A network of intersecting molecular pathways interacts to initiate and execute axon destruction. Maximum protection against axon degeneration likely requires more than manipulation of a single target. Here, we describe the process of designing a high-throughput arrayed screening assay for the identification of key factors responsible for axon destruction and/or protection. First, we go over some existing screens in the literature, then discuss the planning, tracking, analysis, and statistics around such a screening experiment. Prioritization of perturbations may allow laboratories to cost-effectively explore the process of screening. We also present the pairing of a combinatorial drug screen with a machine learning algorithm, predicting how to best modulate neurodegenerative and neuroprotective components.


Subject(s)
Axons/physiology , High-Throughput Screening Assays/methods , Nerve Degeneration/physiopathology , Animals , Axotomy , CRISPR-Cas Systems , Combinatorial Chemistry Techniques , Computer Simulation , Drug Evaluation, Preclinical/methods , Finches/embryology , High-Throughput Screening Assays/instrumentation , Image Processing, Computer-Assisted , Phenotype , Quality Control , RNA Interference , Retinal Ganglion Cells/cytology , Sensitivity and Specificity , Support Vector Machine
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